Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_11g0018080 | OGI:06027190 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr11:23344102-23345678 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGAATTCTTACTAATCCAAATGATCTTCTATCCTCTGTCCTAAAATCAAAATATTTTCCAAACACTTCCTTTTGGAAGGCTAGAACAGATATGCCAAAATCTGCTTTGTGGTCTTCTATTCTTCAGGTAAGGGATGTCTTGGAGGAAGCTTCAGTGTGGCAACTTTCTAAAGGTGATATTTCTATTTGGAGCCAACCCTGGTGCTCTATTTGGAAAAACATTCATGATCATCTTAATCTTGATAATCTTCCTTTTCACATGCCTGATAAGGTTTCTGATCTTTGGGATGAGAATAAGAATTGGGATGCTCAGAAAATAACTCAAATTTTTGATAGTGCAGCTCAACATTCAATTATGCAGGTTCAGATTATGCAGGGAGAGGAGGAAGATAGGCTTTGCTGGAAGTACACACCCTCAGGAGTCTGTTCAGCCAAGAGTGCTTACAAGACAATTTACAATGAAATGTACCCCAATCAAAATCAGGTCAGTAATTTAACAAAAAATCTTTTGAAATTAATCTGGAAACACAGGTACATGCCTCCCAGAGTCAAAACTTTTGGATGGAGGCTGCTGAGTAATGCTCTCCCAACTGCTCAAAGAATGCACCACAGGATCAAAACCGTTAGTCCCAATTGTCAGACCTGTGGTCAAAGGGAGGATGACTTGCATCTCTTCTTTCTCTGTAATTTCAGTCGTTTATGTTGGTTCGTCTCTGACTTTAATCTCAAAGCTGATAATCTTTCTTCTCTAGGCTCTGTTCAACATATTATTGCCTATCTTTCAGCTAATGGCATCAATATATACAATCTTTTAATTATGCTTTGGCAGGTTTGGAAAGCAAGGAATGATATCAACTTCAAAACAAAGATTTGGGAGCCACAACAAGTGTGCAATGCTGCGCAGGCAATGGCAAAGACATATGAAAGTGTTCATCAAATGGAAGAAGACAGTTGCCAAGACTTCAATCGGGCTGAGGAGAATAATATAAGAAATTCTGTTGTTAAAATTCCTGCAGGAACAAGAGTTTATGTGGATGCCTCTTAGAAGGAAGAGAAAACAGGAGTAGGGATCTTCATCCACAACCCTAGCAATCACAATGCTATTGTCATCAAAGCTCAAAGTCTCAATGCAGGAACTCCTTTGCTAGCAGAAGCTGAAGGATTATTTTTAGCTATGCAAATTGCTCGTCATCTTCAGCTGCAAGACCCTATTTTTCTCTCAGATAACAGTGAGATAGTGAATGCTGTGCAGAACGAGGACTACATACAAAACCCCGGACATTGGTCTCTGAGACCAATTCTTTCAAGAATTAAAAATTTTCTGCAGGATCAACAAGTTCGAATCATTTGGATCTCTAGAGAGCTCAACAAAGTTGCAGATGGCCTTGCAAAGTCAGCAAGACAAGCTCAGACTAACAGCTGCTTAGCTTTTGATTGCTCTAATATTTCTCACATTTGTTCCAGAGATGTTTGTCCTACTAAAAGAGCTCTTTCCTTCACTCCTAATGGAGCAGTTAATGTAACTCATGCTTTGTGTTTCTAAAACGCTTTCTTTTAATAAAGTGCATGAGTTCTCA
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| CDS seq | ATGCCTCCCAGAGTCAAAACTTTTGGATGGAGGCTGCTGAGTAATGCTCTCCCAACTGCTCAAAGAATGCACCACAGGATCAAAACCGAAGAGAAAACAGGAGTAGGGATCTTCATCCACAACCCTAGCAATCACAATGCTATTGTCATCAAAGCTCAAAGTCTCAATGCAGGAACTCCTTTGCTAGCAGAAGCTGAAGGATTATTTTTAGCTATGCAAATTGCTCGTCATCTTCAGCTGCAAGACCCTATTTTTCTCTCAGATAACAGTGAGATAGTGAATGCTGTGCAGAACGAGGACTACATACAAAACCCCGGACATTGGTCTCTGAGACCAATTCTTTCAAGAATTAAAAATTTTCTGCAGGATCAACAAGTTCGAATCATTTGGATCTCTAGAGAGCTCAACAAAGTTGCAGATGGCCTTGCAAAGTCAGCAAGACAAGCTCAGACTAACAGCTGCTTAGCTTTTGATTGCTCTAATATTTCTCACATTTGTTCCAGAGATGTTTGTCCTACTAAAAGAGCTCTTTCCTTCACTCCTAATGGAGCAGTTAATGTAACTCATGCTTTGTGTTTCTAA
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| Protein seq | MPPRVKTFGWRLLSNALPTAQRMHHRIKTEEKTGVGIFIHNPSNHNAIVIKAQSLNAGTPLLAEAEGLFLAMQIARHLQLQDPIFLSDNSEIVNAVQNEDYIQNPGHWSLRPILSRIKNFLQDQQVRIIWISRELNKVADGLAKSARQAQTNSCLAFDCSNISHICSRDVCPTKRALSFTPNGAVNVTHALCF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_11g0018080 | OsIR64_11g0018080.01 | Chr11 | 23344633 | 23345654 | + | NAM | ||
| CDS seq | ATGCCTCCCAGAGTCAAAACTTTTGGATGGAGGCTGCTGAGTAATGCTCTCCCAACTGCTCAAAGAATGCACCACAGGATCAAAACCGAAGAGAAAACAGGAGTAGGGATCTTCATCCACAACCCTAGCAATCACAATGCTATTGTCATCAAAGCTCAAAGTCTCAATGCAGGAACTCCTTTGCTAGCAGAAGCTGAAGGATTATTTTTAGCTATGCAAATTGCTCGTCATCTTCAGCTGCAAGACCCTATTTTTCTCTCAGATAACAGTGAGATAGTGAATGCTGTGCAGAACGAGGACTACATACAAAACCCCGGACATTGGTCTCTGAGACCAATTCTTTCAAGAATTAAAAATTTTCTGCAGGATCAACAAGTTCGAATCATTTGGATCTCTAGAGAGCTCAACAAAGTTGCAGATGGCCTTGCAAAGTCAGCAAGACAAGCTCAGACTAACAGCTGCTTAGCTTTTGATTGCTCTAATATTTCTCACATTTGTTCCAGAGATGTTTGTCCTACTAAAAGAGCTCTTTCCTTCACTCCTAATGGAGCAGTTAATGTAACTCATGCTTTGTGTTTCTAA
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| Protein seq | MPPRVKTFGWRLLSNALPTAQRMHHRIKTEEKTGVGIFIHNPSNHNAIVIKAQSLNAGTPLLAEAEGLFLAMQIARHLQLQDPIFLSDNSEIVNAVQNEDYIQNPGHWSLRPILSRIKNFLQDQQVRIIWISRELNKVADGLAKSARQAQTNSCLAFDCSNISHICSRDVCPTKRALSFTPNGAVNVTHALCF |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_11g0018080 | OsIR64_11g0018080.02 | Chr11 | 23344102 | 23345678 | + | IsoSeq | ||
| CDS seq | ATGTCTTGGAGGAAGCTTCAGTGTGGCAACTTTCTAAAGGTGATATTTCTATTTGGAGCCAACCCTGGTGCTCTATTTGGAAAAACATTCATGATCATCTTAATCTTGATAATCTTCCTTTTCACATGCCTGATAAGGTTTCTGATCTTTGGGATGAGAATAAGAATTGGGATGCTCAGA |
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| Protein seq | MSWRKLQCGNFLKVIFLFGANPGALFGKTFMIILILIIFLFTCLIRFLIFGMRIRIGMLR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.762598 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g30300 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0019690 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0024950 | RBH | 2.963561 | 4.127228 | 25.715715 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0003760 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0364500 | RBH | 0.0166685 | 0 | 0.026001 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0003860 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0382900 | RBH | 0 | 0 | 0.4534555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019430 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0018000 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019440 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0019180 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0019270 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020440 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
