Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0643433 | OGI:03047390 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:24811805-24814017 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTATGTTTCATGACTTTCATGATATGAAGTTACCCCTTCATAGCCTAAACTTTGGCATCATCACTCTGTTACCGAAGCAAGAGGAAGCAAGAAAGATTCAACAATATAGACCAATTTGTCTTTTGAATGTGAGTTTTAAGATTTTTACTAAGGTCATAGCCAATAGAGTAGCTCTAGTAGCTCAAAAGGTTATTAGACCATCACAGACAGCCTTCTTGCCAGGGAGAAACATTATGGAAGGGGTAGTAATTTTACATGAAACAATTCATGAGATCCATAGGAAAAGAAGAGACGGAGTTATCTTGAAACTAGATTTTGAGAAGGCGTATGATAAAGTTGATTGGAGGTTTCTGCAACAAACTTTGAAGATGAAAGGCTTCTCTCCAAAGTGGTGTGAATGGATTGATATGATTGTGAGAGGAGGGAGTGTAGCTGTGAAGGTGAACGAGGATATGGAAAACTTTTTTCAAACAAAAGAAGGGCTTAGACAAGGGGATCCGTTGTCTCCAATACTCTTTAACCTAGTGGCTGATATGTTAGCATTGCTAATGCACAGGGCGAATGAGCAAAAGAAAATTCGTGGACTCGTTCCATATCTTGTAGACGATGGGCTCTCAATTCTGCAGTACGCAGATGATACTATCCTCTTTATGGAGCATGATCTAGAGGAGGCCAGGAATCTCAAGTTAGTGCTAAGCACCTTTGAGAAATTATCTGGGCTTAAGATCAACTTTCATAAAAGTGAGCTTTTTTGTTTTGGTAAGGCAAATGAAGTGATGATGGATTACGTAAAGAATTTTGGGTGTGATATGGGAAAGTATCCATTTAAATATCTAGGTATCCCAATGCATCATAAGAGAATCTCAAACAAGGATTGGCAGGCTATTGAGGATAGATTCCAGAAAAAACTAAGTAGCTGGAAAGGGAAACACTTGTCGGTAGGAGGGAGGTTGGTCTTGATTAATTCGGTTTTGAGTAGTTTGGCCATGTTCATGCTCTCTTTTTTTGAGATACCTAAGGGTATACTTAAGAAGCTAGACTATTATAGGTCCAGGTTCTTTTGGCAGTGTGATGAGAATAAGAAGAAGTATAGGTTGGCCAAATGGAGTGTTTTATGTAGCCCTAAGGAGTGTGGTGGCCTCGGAATCCAAAACTTGGAAACACAGAATAGATGTTTGCTAAGCAAATGGTTGTTCCAATTGATAAACGAGGAAGGGGTGTGGCAAACCTTGCTTAGAAGGAAATACTTGTCAAATAAGACTATAACCCAGGTAGAAAGGAGTCCAGGAGACTCACACTTTTGGGGAGGACTCATGGAGGTTAAGAGGGACTTCCTTTCTTTCAGATCTTGGGTAGTTCATGATGGGACACAAGTAAGGTTTTGGGAGGACTGTTGGTGTGGGGATACGTCTTTCGACAAAGTTTTCCCCACACTTTATTCGTTGGTTAGGAGAAGGAATGTAAGTGTAGCAGGGGTGCTAAGCACGCTGCCTTTAAATGTGTCGTTCAGGAGGGCATTGATAGGGGATAACCGAAGATATTGGTACCAATTAGTGGCAAAAGTCTGTTCTTTTAACCTCTCGGAACAAAGTGACTCGTTCAAGTGGAGGTTGAAAGGAGATGGAACCTTTTCGGTAAATTCTATGTACAAGGCGATTATGTATCAAGATATTATACCAAGGAAATCTTTGATTTGGAAACTTAGAATTCCACTGAAAATAAAGATTTTCTTGTGGTACATGCAAAAGGGCGTTATGTTAACAAAAGATAATATGGCGAAAAGAAAGTGGAAAGGTAGCACTAAGTGTTGTTTTTGTAGCTCTAACGAGAACATACATCACCTTTTCCTTGAATGTCGTATTGTAAGGTATATTTGGAGTGCTATACATATTACCTTTGGTATTCCACCGCCTAATAGTGTTGCGCATCTTTTCGGTAGTTGGCTTAATGGTTTGCATCCTAAGCTAAGATGTCACTTTCTGGGGTGTATTGGGGCGCTATGTTGGGCGTTATGGTTATGCCGAAATGATGAGGTATTTCATGGTACCAAAATTAATTCTTTTATGCAGGTAATATTCAGAGGAACACACTGGGCGAGGCAATGGGCCTTGTTGCTTAATGAAGAAGATGGAATCATGGTGAAGAAAGGATGCATGTTGCTAGAAGCCAATGTGATGGATTTCTTTTCCAAGCAGGGATGGAATTTTAG
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| CDS seq | ATGGCTATGTTTCATGACTTTCATGATATGAAGTTACCCCTTCATAGCCTAAACTTTGGCATCATCACTCTGTTACCGAAGCAAGAGGAAGCAAGAAAGATTCAACAATATAGACCAATTTGTCTTTTGAATGTGAGTTTTAAGATTTTTACTAAGGTCATAGCCAATAGAGTAGCTCTAGTAGCTCAAAAGGTTATTAGACCATCACAGACAGCCTTCTTGCCAGGGAGAAACATTATGGAAGGGGTAGTAATTTTACATGAAACAATTCATGAGATCCATAGGAAAAGAAGAGACGGAGTTATCTTGAAACTAGATTTTGAGAAGGCGTATGATAAAGTTGATTGGAGGTTTCTGCAACAAACTTTGAAGATGAAAGGCTTCTCTCCAAAGTGGTGTGAATGGATTGATATGATTGTGAGAGGAGGGAGTGTAGCTGTGAAGGTGAACGAGGATATGGAAAACTTTTTTCAAACAAAAGAAGGGCTTAGACAAGGGGATCCGTTGTCTCCAATACTCTTTAACCTAGTGGCTGATATGTTAGCATTGCTAATGCACAGGGCGAATGAGCAAAAGAAAATTCGTGGACTCGTTCCATATCTTGTAGACGATGGGCTCTCAATTCTGCAGTACGCAGATGATACTATCCTCTTTATGGAGCATGATCTAGAGGAGGCCAGGAATCTCAAGTTAGTGCTAAGCACCTTTGAGAAATTATCTGGGCTTAAGATCAACTTTCATAAAAGTGAGCTTTTTTGTTTTGGTAAGGCAAATGAAGTGATGATGGATTACGTAAAGAATTTTGGGTGTGATATGGGAAAGTATCCATTTAAATATCTAGGTATCCCAATGCATCATAAGAGAATCTCAAACAAGGATTGGCAGGCTATTGAGGATAGATTCCAGAAAAAACTAAGTAGCTGGAAAGGGAAACACTTGTCGGTAGGAGGGAGGTTGGTCTTGATTAATTCGGTTTTGAGTAGTTTGGCCATGTTCATGCTCTCTTTTTTTGAGATACCTAAGGGTATACTTAAGAAGCTAGACTATTATAGGTCCAGGTTCTTTTGGCAGTGTGATGAGAATAAGAAGAAGTATAGGTTGGCCAAATGGAGTGTTTTATGTAGCCCTAAGGAGTGTGGTGGCCTCGGAATCCAAAACTTGGAAACACAGAATAGATGTTTGCTAAGCAAATGGTTGTTCCAATTGATAAACGAGGAAGGGGTGTGGCAAACCTTGCTTAGAAGGAAATACTTGTCAAATAAGACTATAACCCAGGTAGAAAGGAGTCCAGGAGACTCACACTTTTGGGGAGGACTCATGGAGGTTAAGAGGGACTTCCTTTCTTTCAGATCTTGGGTAGTTCATGATGGGACACAAGTAAGGTTTTGGGAGGACTGTTGGTGTGGGGATACGTCTTTCGACAAAGTTTTCCCCACACTTTATTCGTTGGTTAGGAGAAGGAATGTAAGTGTAGCAGGGGTGCTAAGCACGCTGCCTTTAAATGTGTCGTTCAGGAGGGCATTGATAGGGGATAACCGAAGATATTGGTACCAATTAGTGGCAAAAGTCTGTTCTTTTAACCTCTCGGAACAAAGTGACTCGTTCAAGTGGAGGTTGAAAGGAGATGGAACCTTTTCGGTAAATTCTATGTACAAGGCGATTATGTATCAAGATATTATACCAAGGAAATCTTTGATTTGGAAACTTAGAATTCCACTGAAAATAAAGATTTTCTTGTGGTACATGCAAAAGGGCGTTATGTTAACAAAAGATAATATGGCGAAAAGAAAGTGGAAAGGTAGCACTAAGTGTTGTTTTTGTAGCTCTAACGAGAACATACATCACCTTTTCCTTGAATGTCGTATTGTAAGGTATATTTGGAGTAATATTCAGAGGAACACACTGGGCGAGGCAATGGGCCTTGTTGCTTAA
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| Protein seq | MAMFHDFHDMKLPLHSLNFGIITLLPKQEEARKIQQYRPICLLNVSFKIFTKVIANRVALVAQKVIRPSQTAFLPGRNIMEGVVILHETIHEIHRKRRDGVILKLDFEKAYDKVDWRFLQQTLKMKGFSPKWCEWIDMIVRGGSVAVKVNEDMENFFQTKEGLRQGDPLSPILFNLVADMLALLMHRANEQKKIRGLVPYLVDDGLSILQYADDTILFMEHDLEEARNLKLVLSTFEKLSGLKINFHKSELFCFGKANEVMMDYVKNFGCDMGKYPFKYLGIPMHHKRISNKDWQAIEDRFQKKLSSWKGKHLSVGGRLVLINSVLSSLAMFMLSFFEIPKGILKKLDYYRSRFFWQCDENKKKYRLAKWSVLCSPKECGGLGIQNLETQNRCLLSKWLFQLINEEGVWQTLLRRKYLSNKTITQVERSPGDSHFWGGLMEVKRDFLSFRSWVVHDGTQVRFWEDCWCGDTSFDKVFPTLYSLVRRRNVSVAGVLSTLPLNVSFRRALIGDNRRYWYQLVAKVCSFNLSEQSDSFKWRLKGDGTFSVNSMYKAIMYQDIIPRKSLIWKLRIPLKIKIFLWYMQKGVMLTKDNMAKRKWKGSTKCCFCSSNENIHHLFLECRIVRYIWSNIQRNTLGEAMGLVA |
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| Function | LINE-1 retrotransposable element ORF2 protein [UniProtKB/Swiss-Prot:P11369] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0643433 | Os03t0643433-00 | Chr03 | 24811805 | 24814017 | + | irgsp1_rep | ||
| CDS seq | ATGGCTATGTTTCATGACTTTCATGATATGAAGTTACCCCTTCATAGCCTAAACTTTGGCATCATCACTCTGTTACCGAAGCAAGAGGAAGCAAGAAAGATTCAACAATATAGACCAATTTGTCTTTTGAATGTGAGTTTTAAGATTTTTACTAAGGTCATAGCCAATAGAGTAGCTCTAGTAGCTCAAAAGGTTATTAGACCATCACAGACAGCCTTCTTGCCAGGGAGAAACATTATGGAAGGGGTAGTAATTTTACATGAAACAATTCATGAGATCCATAGGAAAAGAAGAGACGGAGTTATCTTGAAACTAGATTTTGAGAAGGCGTATGATAAAGTTGATTGGAGGTTTCTGCAACAAACTTTGAAGATGAAAGGCTTCTCTCCAAAGTGGTGTGAATGGATTGATATGATTGTGAGAGGAGGGAGTGTAGCTGTGAAGGTGAACGAGGATATGGAAAACTTTTTTCAAACAAAAGAAGGGCTTAGACAAGGGGATCCGTTGTCTCCAATACTCTTTAACCTAGTGGCTGATATGTTAGCATTGCTAATGCACAGGGCGAATGAGCAAAAGAAAATTCGTGGACTCGTTCCATATCTTGTAGACGATGGGCTCTCAATTCTGCAGTACGCAGATGATACTATCCTCTTTATGGAGCATGATCTAGAGGAGGCCAGGAATCTCAAGTTAGTGCTAAGCACCTTTGAGAAATTATCTGGGCTTAAGATCAACTTTCATAAAAGTGAGCTTTTTTGTTTTGGTAAGGCAAATGAAGTGATGATGGATTACGTAAAGAATTTTGGGTGTGATATGGGAAAGTATCCATTTAAATATCTAGGTATCCCAATGCATCATAAGAGAATCTCAAACAAGGATTGGCAGGCTATTGAGGATAGATTCCAGAAAAAACTAAGTAGCTGGAAAGGGAAACACTTGTCGGTAGGAGGGAGGTTGGTCTTGATTAATTCGGTTTTGAGTAGTTTGGCCATGTTCATGCTCTCTTTTTTTGAGATACCTAAGGGTATACTTAAGAAGCTAGACTATTATAGGTCCAGGTTCTTTTGGCAGTGTGATGAGAATAAGAAGAAGTATAGGTTGGCCAAATGGAGTGTTTTATGTAGCCCTAAGGAGTGTGGTGGCCTCGGAATCCAAAACTTGGAAACACAGAATAGATGTTTGCTAAGCAAATGGTTGTTCCAATTGATAAACGAGGAAGGGGTGTGGCAAACCTTGCTTAGAAGGAAATACTTGTCAAATAAGACTATAACCCAGGTAGAAAGGAGTCCAGGAGACTCACACTTTTGGGGAGGACTCATGGAGGTTAAGAGGGACTTCCTTTCTTTCAGATCTTGGGTAGTTCATGATGGGACACAAGTAAGGTTTTGGGAGGACTGTTGGTGTGGGGATACGTCTTTCGACAAAGTTTTCCCCACACTTTATTCGTTGGTTAGGAGAAGGAATGTAAGTGTAGCAGGGGTGCTAAGCACGCTGCCTTTAAATGTGTCGTTCAGGAGGGCATTGATAGGGGATAACCGAAGATATTGGTACCAATTAGTGGCAAAAGTCTGTTCTTTTAACCTCTCGGAACAAAGTGACTCGTTCAAGTGGAGGTTGAAAGGAGATGGAACCTTTTCGGTAAATTCTATGTACAAGGCGATTATGTATCAAGATATTATACCAAGGAAATCTTTGATTTGGAAACTTAGAATTCCACTGAAAATAAAGATTTTCTTGTGGTACATGCAAAAGGGCGTTATGTTAACAAAAGATAATATGGCGAAAAGAAAGTGGAAAGGTAGCACTAAGTGTTGTTTTTGTAGCTCTAACGAGAACATACATCACCTTTTCCTTGAATGTCGTATTGTAAGGTATATTTGGAGTAATATTCAGAGGAACACACTGGGCGAGGCAATGGGCCTTGTTGCTTAA
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| Protein seq | MAMFHDFHDMKLPLHSLNFGIITLLPKQEEARKIQQYRPICLLNVSFKIFTKVIANRVALVAQKVIRPSQTAFLPGRNIMEGVVILHETIHEIHRKRRDGVILKLDFEKAYDKVDWRFLQQTLKMKGFSPKWCEWIDMIVRGGSVAVKVNEDMENFFQTKEGLRQGDPLSPILFNLVADMLALLMHRANEQKKIRGLVPYLVDDGLSILQYADDTILFMEHDLEEARNLKLVLSTFEKLSGLKINFHKSELFCFGKANEVMMDYVKNFGCDMGKYPFKYLGIPMHHKRISNKDWQAIEDRFQKKLSSWKGKHLSVGGRLVLINSVLSSLAMFMLSFFEIPKGILKKLDYYRSRFFWQCDENKKKYRLAKWSVLCSPKECGGLGIQNLETQNRCLLSKWLFQLINEEGVWQTLLRRKYLSNKTITQVERSPGDSHFWGGLMEVKRDFLSFRSWVVHDGTQVRFWEDCWCGDTSFDKVFPTLYSLVRRRNVSVAGVLSTLPLNVSFRRALIGDNRRYWYQLVAKVCSFNLSEQSDSFKWRLKGDGTFSVNSMYKAIMYQDIIPRKSLIWKLRIPLKIKIFLWYMQKGVMLTKDNMAKRKWKGSTKCCFCSSNENIHHLFLECRIVRYIWSNIQRNTLGEAMGLVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0643433 | RBH | 0.665818 | 0.710207 | 0.441691 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g43700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0041620 | RBH | 0.255608 | 0.000000 | 0.427363 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022090 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022150 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0040990 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0427400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0040730 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0426800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0021970 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0041380 | RBH | 0.000000 | 2.322688 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0022050 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0021770 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G040941 | RBH | 0.324402 | 1.382530 | 2.020595 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0021650 | RBH | 0.0 | 0.0 | 0.0 |
