Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_03g0022050 | OGI:03047390 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr03:18981001-18982573 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacactttcgcggcattgtgcaacactgttgttaccaggaacaccctctctcctctagccagcgcccagattccgctacgggcgtccttgtacgcggatgatgctattatcatcctccatccctccaagcaggatgccgaagtgatccaattcattcttaagctcatgggcgaggcgacgggcctcatttccaacctcgccaagaactcctttacgccaatcaattgttccgagactaaaatcttggaggtaatagaggtgcttggatgtctggttaaggacctccccatcacctatctagggctccccatgactactcgtaagctatcaaaggcccagctgccgcttatgttggataggatggcgaagaatctagcaggctggaaatcacgcctgctctcaccggacgctcggctcgctctgatcaaacatgttctgatggctatcccactctatcttttatcggttttggaattacaggtgtgggcggttaaggcaatcgagaaaaaatgttgcggcttttttgtggaaagaggatgaggatgcgtcgcggggggggatgcagccttgttgcttaggaaaaactcttcttgccaattgagaatggcggtctgggcattgtcaatcttggcagaatgggcattgcaatgtgaacacgttggctttggttgcagcgttcccaaccggagtggctgtgggcatccttcgcgccggctcaagacaagaaagccgagcatttccttgctgcgggttgcaagatggtgttgggggacgggaacaacatcttcttctgggcagacaactagctcccggatggaggttctattctgaactgggcgccaattttatgttcttacgtcaaaatcaggggaaggacagttcactcagcactgcaagaggatgcctggaacggcgacatcagggggggttatcgctccaagctatgatggaatatctccaagtctaggacctgatcaccgctgtcaccctgaaccctgctcagtcggacgtattctgttggaagcctgctacggatggtgttttctcggtgaaaacggcctactccctcctctgcgctgggaagacatggtcggcggtcggcagattgatcttgaagtcccgcgcaccgacccgctgcaaattcttcatgttcctcgccatgcgatgggcttgcttgacgacggacaacctccagcggcggggctggcatctcgcctcgttctgtcacctctgcgggaatgatgcggaatcctgcgcccacatcttccactcctgtgattacacgaagtcggtatgggcgcaggtcagaagttgccttggcatttcctgtgattctccttctggcgacatgctgagttggtggtgtgtggcacgtaaatcggttcacaagacggattggaagacattcgatgcgggagttatcctggtggtgtggttaatttggaaggaacgtaatgcgtgggtgttcgatggaaaggccacttcagcgatgcatctgtgtgtgaccatcgctgatgagtgggaagcatggaaggccacgggtttgttgtgcgccattgattgtggttag
More
|
||||||||||
| CDS seq | atggacactttcgcggcattgtgcaacactgttgttaccaggaacaccctctctcctctagccagcgcccagattccgctacgggcgtccttgtacgcggatgatgctattatcatcctccatccctccaagcaggatgccgaagtgatccaattcattcttaagctcatgggcgaggcgacgggcctcatttccaacctcgccaagaactcctttacgccaatcaattgttccgagactaaaatcttggaggacctgatcaccgctgtcaccctgaaccctgctcagtcggacgtattctgttggaagcctgctacggatggtgttttctcggtgaaaacggcctactccctcctctgcgctgggaagacatggtcggcggtcggcagattgatcttgaagtcccgcgcaccgacccgctgcaaattcttcatgttcctcgccatgcgatgggcttgcttgacgacggacaacctccagcggcggggctggcatctcgcctcgttctgtcacctctgcgggaatgatgcggaatcctgcgcccacatcttccactcctgtgattacacgaagtcggtatgggcgcaggtcagaagttgccttggcatttcctgtgattctccttctggcgacatgctgagttggtggtgtgtggcacgtaaatcggttcacaagacggattggaagacattcgatgcgggagttatcctggtggtgtggttaatttggaaggaacgtaatgcgtgggtgttcgatggaaaggccacttcagcgatgcatctgtgtgtgaccatcgctgatgagtgggaagcatggaaggccacgggtttgttgtgcgccattgattgtggttag
More
|
||||||||||
| Protein seq | MDTFAALCNTVVTRNTLSPLASAQIPLRASLYADDAIIILHPSKQDAEVIQFILKLMGEATGLISNLAKNSFTPINCSETKILEDLITAVTLNPAQSDVFCWKPATDGVFSVKTAYSLLCAGKTWSAVGRLILKSRAPTRCKFFMFLAMRWACLTTDNLQRRGWHLASFCHLCGNDAESCAHIFHSCDYTKSVWAQVRSCLGISCDSPSGDMLSWWCVARKSVHKTDWKTFDAGVILVVWLIWKERNAWVFDGKATSAMHLCVTIADEWEAWKATGLLCAIDCG |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0022050 | OsGoSa_03g0022050.01 | Chr03 | 18981001 | 18982573 | + | NAM | ||
| CDS seq | atggacactttcgcggcattgtgcaacactgttgttaccaggaacaccctctctcctctagccagcgcccagattccgctacgggcgtccttgtacgcggatgatgctattatcatcctccatccctccaagcaggatgccgaagtgatccaattcattcttaagctcatgggcgaggcgacgggcctcatttccaacctcgccaagaactcctttacgccaatcaattgttccgagactaaaatcttggaggacctgatcaccgctgtcaccctgaaccctgctcagtcggacgtattctgttggaagcctgctacggatggtgttttctcggtgaaaacggcctactccctcctctgcgctgggaagacatggtcggcggtcggcagattgatcttgaagtcccgcgcaccgacccgctgcaaattcttcatgttcctcgccatgcgatgggcttgcttgacgacggacaacctccagcggcggggctggcatctcgcctcgttctgtcacctctgcgggaatgatgcggaatcctgcgcccacatcttccactcctgtgattacacgaagtcggtatgggcgcaggtcagaagttgccttggcatttcctgtgattctccttctggcgacatgctgagttggtggtgtgtggcacgtaaatcggttcacaagacggattggaagacattcgatgcgggagttatcctggtggtgtggttaatttggaaggaacgtaatgcgtgggtgttcgatggaaaggccacttcagcgatgcatctgtgtgtgaccatcgctgatgagtgggaagcatggaaggccacgggtttgttgtgcgccattgattgtggttag
More
|
|||||||
| Protein seq | MDTFAALCNTVVTRNTLSPLASAQIPLRASLYADDAIIILHPSKQDAEVIQFILKLMGEATGLISNLAKNSFTPINCSETKILEDLITAVTLNPAQSDVFCWKPATDGVFSVKTAYSLLCAGKTWSAVGRLILKSRAPTRCKFFMFLAMRWACLTTDNLQRRGWHLASFCHLCGNDAESCAHIFHSCDYTKSVWAQVRSCLGISCDSPSGDMLSWWCVARKSVHKTDWKTFDAGVILVVWLIWKERNAWVFDGKATSAMHLCVTIADEWEAWKATGLLCAIDCG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0643433 | RBH | 0.665818 | 0.710207 | 0.441691 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g31060 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0643433 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0022230 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022090 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022150 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0292100 | RBH | 0.007356 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0277100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0021970 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0021770 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G021740 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0021650 | RBH | 0.0 | 0.0 | 0.0 |
