Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsCMeo_01g0007820 OGI:01018890 | 16/16 CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) Chr01:6219961-6224370
Gene Symbol -
DNA seq

ctccaacaatttcattttatcttatcttgttgattagcttcaagttaatggaataacagcagcgaacttgcttgatttttacactgatcaaacttataaatattcatacaaatcacattccattcttgtgtaaagatcaatgcacattagacccaatagttgcacatctgtcacacgacatttttttcataggatcaagaacatgaattctgcacataaacaggctttttcctttagccttgtgaagagggatgctgccgcgagtattggttcaccagcaacagtatacatcactgatcaatctactaggttgcctctgcagagagtatctcgagctcagcccaccagagaggcgagagccgcggcgtcgctgcctccggcgagatgttgagagcttgtctcagcttgcgggtggcgtctctcatcgttggcctcttatctgagtcgggatcaatgcactcctgaaccacctcgcagacggcctccagctcgttggcgttgtgttccttcagcgacgcgtcgacgagcttgctgtagctcttgcccttcagatactcagcggcctgtggcaaagggagattcaatttggaattgtgttttgctagaaatcaagtttccttcttaaagaggagaagagttggggttttcttggagtttatttgggtttgcatgattttacccagttgcacatggattcttggtcgtctgcttcagggagctttccggatatgatctctatcagaagcgtgccaaagcagtagacgttgctcgcgatatcaggaggacattcagaacggctgctgctatcctcctttgcagtctttgcttttatggcgacttctttccagataccaacatcagcaatctgcacaagaagagtacatagcatcacactagctcaagggaagggtcatgttaatcatccattttaatcaattcaaccttgtgtcgtaatgccaaatgacatgttattgcgcaacaaattagatgcgcaattcagctgcttcaaatgagtggcaacactacatatgttaccgagatcactacagctaattgaaactgtaccttggcagcataatcatctgtcatgaaaattgtgtcggagcgcatgtcggttatcgcaacaggtggattgagatcatggtgcatgtattggagacagtatgccacacccatgatgatcctcatccttgcagcccagtccagatgctcaaattctttgactgcaaaataagcgcattcaatgagcagaatagtttccatatgcgtgaggaagtcatgaaaaaataaaacaacttacggtggagatgctcagagagagtgccatttggagcatactcgaacaccatcattctcatgaagggttgattttccaggcaataacctaggaggttgatgaaattcttgtggtttactcttgatagtgtgtctatctacacaagcaaatcaggggattagcgaagatctagcattgaaggatttactgctccaactagaacatgtaggaagccatggaccttttttctgaagcatgtctctgaactcttaggccactctttgagcgacaaaatggcagtggaaacaacactgatctcaactccgctagataatgtccctttgaacacggtgcagctagggaaagtgttgattatgttactgaaatcctcacaagcggcttcgagttcaggtctgtttagctttggaacacctgaatgcaacaatttacatacagaagattaactgcattacctagagactctgaaatataataataataaaaaagaaatccaaataatttcctgaactgaccatgggccagttccaaatatgaatatcgagcagtttaaatattaattggttcacaaaaggtgagcaggtctttgaaaatttgtcaggctataagagtaatgcaaaatagctatgcaactatgcgaattttgttatagatgatagatttgtacttggcaggtagttcctgttttttctgcatgcaatgtatctacttcccaaaccataaaagcagataggataataagaatgtttacctgttacaaatgctttctgaagtgggccacttagacccgttttccaaggtcctattgccgcacgccctcgcttccgccagaccaagattggagccacaatcaggctaatcagcaatattgcagctggaattatcataaaatatgcccacttgctgtgctttgaaccagacacttcatcggttgattgatttgctgctccagactgcattgcagcagcatcagtatttacagctgattccagaacttcggcctctgaatttgggaatgcagagaatgaaccactccctaaagagagaacatcaatagccctttggatctcttctgaatttacagggccagaagatttagcatcattccctgaaagggcaggcagattgccaacttcaccgagcagcctgcggcccacggcacttgcaaaggactgcaaattttgcataatgtgtggctcgcctagacctgacagacataaaacaatgtaaaattaatgtttaatgctgtgcataacaaaaggaagaaaggctgattatttatacaacttttgaatgtgcggttacttgctaggttggtggagtatttctctcggagatcactgaaagaagtccaatccttaaaccccaccctgtaaaataaagatctgttaggaggtgagataaaacctttagaaattaaaaaaaaatggaaatgattaggaggctataagcaactgaaaaggtaacaccaaaatagcccacataccagcaacctaattttctgctcaagcatcctgcctgctcatcagatatatcttgaatgtgcaaagaagagatatcatcttggaactgattgtcatgaagtgacctgacagatgataattgctcattatacgaaataactagcagagagtgaagcacccaattagacttacagctgcttgagcagtggcattgccattaattcttctggaatcgttccatccaagttgttgctgctcaaatccagtacttcaagggcagttaaccctccgaactctttgggaattttcccacggaaattgttgtttcgaagtatgctgggtaagcataaccagtaggaataatatcagtcaacccgtggattccacagagcataatccgttgaactagctgaaaagaaactaagttcagatcatccatacagttctaagcactcacagagatttcaaaagttgaagacgttcaatctcaggtgcgagagttcccaccaattctcggcctgttaagttcctacatgttcacacagataagaactcatatgcacaattaagaacatcaatatgccaggataaagaaacatcgtagtaagaaatgcggttttgaacagtcatgctaatgacaaagaacaaaccatttcctgcataaaaaccaccaattgtggtatcatcgaaattagttcatttaactacgtttttcacatggaaatgcatcgaacatcaattcaatttggagcttcaggaacaaaaaactaatttagtggcttacacaggagacattgtattgggggaaaacatagagaaaaacagacttacaaaatctcaactttaccgtcaaagcaatgcacgccggaccatctgcagggcgtggcgtctgccggatcccaatcccgcaaggcgccatgggggtcagcctccaccctctccctcagctcgagcaacgccattcctgcacgcaggaagcacgacgccatgggaggtcagaccaagcaacacggctaccagcctaccaccaccatggcaagctgctcctctggggccgttaccttcgccgttgagcgtggcgccgccgcgccccgcctgcgcctggagcagcacgaggaagacgaagagcaggtgacgcagcgcgtcgcggaggtggggcccgacggtggcgcggcgaggcccccaccgcgcacccatggcgacgggggaggagcgcctcccggacaatggcagcccggcggccacccgccgctgccgccgccctgttccggccgagaatgtggggggagggaatcaagaaccagacgaagcttagcgaaacaaccgcggcgagcagaggcgctggctccggtcgatctcttcctctccggcctcacgacgccgggaaaacaagatcacaagaggacgacgacgacgacgacgacgacacgacgccgcgggcgctggcttagcccggcaaagccccgagggaggccgagctatccgccggaggatcccatgggtcgcctcgcccgcgccgggacggtgtctctgcggcggcgtcggcgaagagctggtgctgtcagcggcggagatggacgtggacgggttctcgtcgggatcgggtggtcggacgacgacgagggcggcggcgcgaagggggtggtggggggg

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CDS seq

atgggtgcgcggtgggggcctcgccgcgccaccgtcgggccccacctccgcgacgcgctgcgtcacctgctcttcgtcttcctcgtgctgctccaggcgcaggcggggcgcggcggcgccacgctcaacggcgaaggaatggcgttgctcgagctgagggagagggtggaggctgacccccatggcgccttgcgggattgggatccggcagacgccacgccctgcagatggtccggcgtgcattgctttgacggtaaagttgagattttgaacttaacaggccgagaattggtgggaactctcgcacctgagattgaacgtcttcaacttttgaaatctctcatacttcgaaacaacaatttccgtgggaaaattcccaaagagttcggagggttaactgcccttgaagtactggatttgagcagcaacaacttggatggaacgattccagaagaattaatggcaatgccactgctcaagcagctgtcacttcatgacaatcagttccaagatgatatctcttctttgcacattcaagatatatctgatgagcaggcaggatgcttgagcagaaaattaggttgctgggtggggtttaaggattggacttctttcagtgatctccgagagaaatactccaccaacctagcaagtaaccgcacattcaaaagtctaggcgagccacacattatgcaaaatttgcagtcctttgcaagtgccgtgggccgcaggctgctcggtgaagttggcaatctgcctgccctttcagggaatgatgctaaatcttctggccctgtaaattcagaagagatccaaagggctattgatgttctctctttagggagtggttcattctctgcattcccaaattcagaggccgaagttctggaatcagctgtaaatactgatgctgctgcaatgcagtctggagcagcaaatcaatcaaccgatgaagtgtctggttcaaagcacagcaagtgggcatattttatgataattccagctgcaatattgctgattagcctgattgtggctccaatcttggtctggcggaagcgagggcgtgcggcaataggaccttggaaaacgggtctaagtggcccacttcagaaagcatttgtaacaggtgttccaaagctaaacagacctgaactcgaagccgcttgtgaggatttcagtaacataatcaacactttccctagctgcaccgtgttcaaagggacattatctagcggagttgagatcagtgttgtttccactgccattttgtcgctcaaagagtggcctaagagttcagagacatgcttcagaaaaaagatagacacactatcaagagtaaaccacaagaatttcatcaacctcctaggttattgcctggaaaatcaacccttcatgagaatgatggtgttcgagtatgctccaaatggcactctctctgagcatctccacctcaaagaatttgagcatctggactgggctgcaaggatgaggatcatcatgggtgtggcatactgtctccaatacatgcaccatgatctcaatccacctgttgcgataaccgacatgcgctccgacacaattttcatgacagatgattatgctgccaagattgctgatgttggtatctggaaagaagtcgccataaaagcaaagactgcaaaggaggatagcagcagccgttctgaatgtcctcctgatatcgcgagcaacgtctactgctttggcacgcttctgatagagatcatatccggaaagctccctgaagcagacgaccaagaatccatgtgcaactgggccgctgagtatctgaagggcaagagctacagcaagctcgtcgacgcgtcgctgaaggaacacaacgccaacgagctggaggccgtctgcgaggtggttcaggagtgcattgatcccgactcagataagaggccaacgatgagagacgccacccgcaagctgagacaagctctcaacatctcgccggaggcagcgacgccgcggctctcgcctctctggtgggctgagctcgagatactctctgcagaggcaacctag

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Protein seq

MGARWGPRRATVGPHLRDALRHLLFVFLVLLQAQAGRGGATLNGEGMALLELRERVEADPHGALRDWDPADATPCRWSGVHCFDGKVEILNLTGRELVGTLAPEIERLQLLKSLILRNNNFRGKIPKEFGGLTALEVLDLSSNNLDGTIPEELMAMPLLKQLSLHDNQFQDDISSLHIQDISDEQAGCLSRKLGCWVGFKDWTSFSDLREKYSTNLASNRTFKSLGEPHIMQNLQSFASAVGRRLLGEVGNLPALSGNDAKSSGPVNSEEIQRAIDVLSLGSGSFSAFPNSEAEVLESAVNTDAAAMQSGAANQSTDEVSGSKHSKWAYFMIIPAAILLISLIVAPILVWRKRGRAAIGPWKTGLSGPLQKAFVTGVPKLNRPELEAACEDFSNIINTFPSCTVFKGTLSSGVEISVVSTAILSLKEWPKSSETCFRKKIDTLSRVNHKNFINLLGYCLENQPFMRMMVFEYAPNGTLSEHLHLKEFEHLDWAARMRIIMGVAYCLQYMHHDLNPPVAITDMRSDTIFMTDDYAAKIADVGIWKEVAIKAKTAKEDSSSRSECPPDIASNVYCFGTLLIEIISGKLPEADDQESMCNWAAEYLKGKSYSKLVDASLKEHNANELEAVCEVVQECIDPDSDKRPTMRDATRKLRQALNISPEAATPRLSPLWWAELEILSAEAT

Function Protein MALE DISCOVERER 2 [UniProtKB/Swiss-Prot:C0LGQ4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsCMeo_01g0007820 OsCMeo_01g0007820.01 Chr01 6219961 6224370 - NAM
CDS seq

atgggtgcgcggtgggggcctcgccgcgccaccgtcgggccccacctccgcgacgcgctgcgtcacctgctcttcgtcttcctcgtgctgctccaggcgcaggcggggcgcggcggcgccacgctcaacggcgaaggaatggcgttgctcgagctgagggagagggtggaggctgacccccatggcgccttgcgggattgggatccggcagacgccacgccctgcagatggtccggcgtgcattgctttgacggtaaagttgagattttgaacttaacaggccgagaattggtgggaactctcgcacctgagattgaacgtcttcaacttttgaaatctctcatacttcgaaacaacaatttccgtgggaaaattcccaaagagttcggagggttaactgcccttgaagtactggatttgagcagcaacaacttggatggaacgattccagaagaattaatggcaatgccactgctcaagcagctgtcacttcatgacaatcagttccaagatgatatctcttctttgcacattcaagatatatctgatgagcaggcaggatgcttgagcagaaaattaggttgctgggtggggtttaaggattggacttctttcagtgatctccgagagaaatactccaccaacctagcaagtctaggcgagccacacattatgcaaaatttgcagtcctttgcaagtgccgtgggccgcaggctgctcggtgaagttggcaatctgcctgccctttcagggaatgatgctaaatcttctggccctgtaaattcagaagagatccaaagggctattgatgttctctctttagggagtggttcattctctgcattcccaaattcagaggccgaagttctggaatcagctgtaaatactgatgctgctgcaatgcagtctggagcagcaaatcaatcaaccgatgaagtgtctggttcaaagcacagcaagtgggcatattttatgataattccagctgcaatattgctgattagcctgattgtggctccaatcttggtctggcggaagcgagggcgtgcggcaataggaccttggaaaacgggtctaagtggcccacttcagaaagcatttgtaacaggtgttccaaagctaaacagacctgaactcgaagccgcttgtgaggatttcagtaacataatcaacactttccctagctgcaccgtgttcaaagggacattatctagcggagttgagatcagtgttgtttccactgccattttgtcgctcaaagagtggcctaagagttcagagacatgcttcagaaaaaagatagacacactatcaagagtaaaccacaagaatttcatcaacctcctaggttattgcctggaaaatcaacccttcatgagaatgatggtgttcgagtatgctccaaatggcactctctctgagcatctccacctcaaagaatttgagcatctggactgggctgcaaggatgaggatcatcatgggtgtggcatactgtctccaatacatgcaccatgatctcaatccacctgttgcgataaccgacatgcgctccgacacaattttcatgacagatgattatgctgccaagattgctgatgttggtatctggaaagaagtcgccataaaagcaaagactgcaaaggaggatagcagcagccgttctgaatgtcctcctgatatcgcgagcaacgtctactgctttggcacgcttctgatagagatcatatccggaaagctccctgaagcagacgaccaagaatccatgtgcaactgggccgctgagtatctgaagggcaagagctacagcaagctcgtcgacgcgtcgctgaaggaacacaacgccaacgagctggaggccgtctgcgaggtggttcaggagtgcattgatcccgactcagataagaggccaacgatgagagacgccacccgcaagctgagacaagctctcaacatctcgccggaggcagcgacgccgcggctctcgcctctctggtgggctgagctcgagatactctctgcagaggcaacctag

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Protein seq

MGARWGPRRATVGPHLRDALRHLLFVFLVLLQAQAGRGGATLNGEGMALLELRERVEADPHGALRDWDPADATPCRWSGVHCFDGKVEILNLTGRELVGTLAPEIERLQLLKSLILRNNNFRGKIPKEFGGLTALEVLDLSSNNLDGTIPEELMAMPLLKQLSLHDNQFQDDISSLHIQDISDEQAGCLSRKLGCWVGFKDWTSFSDLREKYSTNLASLGEPHIMQNLQSFASAVGRRLLGEVGNLPALSGNDAKSSGPVNSEEIQRAIDVLSLGSGSFSAFPNSEAEVLESAVNTDAAAMQSGAANQSTDEVSGSKHSKWAYFMIIPAAILLISLIVAPILVWRKRGRAAIGPWKTGLSGPLQKAFVTGVPKLNRPELEAACEDFSNIINTFPSCTVFKGTLSSGVEISVVSTAILSLKEWPKSSETCFRKKIDTLSRVNHKNFINLLGYCLENQPFMRMMVFEYAPNGTLSEHLHLKEFEHLDWAARMRIIMGVAYCLQYMHHDLNPPVAITDMRSDTIFMTDDYAAKIADVGIWKEVAIKAKTAKEDSSSRSECPPDIASNVYCFGTLLIEIISGKLPEADDQESMCNWAAEYLKGKSYSKLVDASLKEHNANELEAVCEVVQECIDPDSDKRPTMRDATRKLRQALNISPEAATPRLSPLWWAELEILSAEAT

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Gene Transcript Chromosome Start End Strand Source
OsCMeo_01g0007820 OsCMeo_01g0007820.02 Chr01 6220007 6224370 - NAM
CDS seq

atgggtgcgcggtgggggcctcgccgcgccaccgtcgggccccacctccgcgacgcgctgcgtcacctgctcttcgtcttcctcgtgctgctccaggcgcaggcggggcgcggcggcgccacgctcaacggcgaaggaatggcgttgctcgagctgagggagagggtggaggctgacccccatggcgccttgcgggattgggatccggcagacgccacgccctgcagatggtccggcgtgcattgctttgacggtaaagttgagattttgaacttaacaggccgagaattggtgggaactctcgcacctgagattgaacgtcttcaacttttgaaatctctcatacttcgaaacaacaatttccgtgggaaaattcccaaagagttcggagggttaactgcccttgaagtactggatttgagcagcaacaacttggatggaacgattccagaagaattaatggcaatgccactgctcaagcagctgtcacttcatgacaatcagttccaagatgatatctcttctttgcacattcaagatatatctgatgagcaggcaggatgcttgagcagaaaattaggttgctgggtggggtttaaggattggacttctttcagtgatctccgagagaaatactccaccaacctagcaagtaaccgcacattcaaaagtctaggcgagccacacattatgcaaaatttgcagtcctttgcaagtgccgtgggccgcaggctgctcggtgaagttggcaatctgcctgccctttcagggaatgatgctaaatcttctggccctgtaaattcagaagagatccaaagggctattgatgttctctctttagggagtggttcattctctgcattcccaaattcagaggccgaagttctggaatcagctgtaaatactgatgctgctgcaatgcagtctggagcagcaaatcaatcaaccgatgaagtgtctggttcaaagcacagcaagtgggcatattttatgataattccagctgcaatattgctgattagcctgattgtggctccaatcttggtctggcggaagcgagggcgtgcggcaataggaccttggaaaacgggtctaagtggcccacttcagaaagcatttgtaacaggtgttccaaagctaaacagacctgaactcgaagccgcttgtgaggatttcagtaacataatcaacactttccctagctgcaccgtgttcaaagggacattatctagcggagttgagatcagtgttgtttccactgccattttgtcgctcaaagagtggcctaagagttcagagacatgcttcagaaaaaagatagacacactatcaagagtaaaccacaagaatttcatcaacctcctaggttattgcctggaaaatcaacccttcatgagaatgatggtgttcgagtatgctccaaatggcactctctctgagcatctccacctcaaagaatttgagcatctggactgggctgcaaggatgaggatcatcatgggtgtggcatactgtctccaatacatgcaccatgatctcaatccacctgttgcgataaccgacatgcgctccgacacaattttcatgacagatgattatgctgccaagattgctgatgttggtatctggaaagaagtcgccataaaagcaaagactgcaaaggaggatagcagcagccgttctgaatgtcctcctgatatcgcgagcaacgtctactgctttggcacgcttctgatagagatcatatccggaaagctccctgaagcagacgaccaagaatccatgtgcaactgggccgctgagtatctgaagggcaagagctacagcaagctcgtcgacgcgtcgctgaaggaacacaacgccaacgagctggaggccgtctgcgaggtggttcaggagtgcattgatcccgactcagataagaggccaacgatgagagacgccacccgcaagctgagacaagctctcaacatctcgccggaggcagcgacgccgcggctctcgcctctctggtgggctgagctcgagatactctctgcagaggcaacctag

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Protein seq

MGARWGPRRATVGPHLRDALRHLLFVFLVLLQAQAGRGGATLNGEGMALLELRERVEADPHGALRDWDPADATPCRWSGVHCFDGKVEILNLTGRELVGTLAPEIERLQLLKSLILRNNNFRGKIPKEFGGLTALEVLDLSSNNLDGTIPEELMAMPLLKQLSLHDNQFQDDISSLHIQDISDEQAGCLSRKLGCWVGFKDWTSFSDLREKYSTNLASNRTFKSLGEPHIMQNLQSFASAVGRRLLGEVGNLPALSGNDAKSSGPVNSEEIQRAIDVLSLGSGSFSAFPNSEAEVLESAVNTDAAAMQSGAANQSTDEVSGSKHSKWAYFMIIPAAILLISLIVAPILVWRKRGRAAIGPWKTGLSGPLQKAFVTGVPKLNRPELEAACEDFSNIINTFPSCTVFKGTLSSGVEISVVSTAILSLKEWPKSSETCFRKKIDTLSRVNHKNFINLLGYCLENQPFMRMMVFEYAPNGTLSEHLHLKEFEHLDWAARMRIIMGVAYCLQYMHHDLNPPVAITDMRSDTIFMTDDYAAKIADVGIWKEVAIKAKTAKEDSSSRSECPPDIASNVYCFGTLLIEIISGKLPEADDQESMCNWAAEYLKGKSYSKLVDASLKEHNANELEAVCEVVQECIDPDSDKRPTMRDATRKLRQALNISPEAATPRLSPLWWAELEILSAEAT

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A5 Chr01 6222461 6222560 - OsCMeo_01g0007820.02 OsCMeo_01g0007820.02,OsCMeo_01g0007820.01 All

Expression

Leaf Root Panicle
FPKM 0.061839 0.0 5.953287

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0206800 RBH 0.0 0.0 5.828360
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g10900 RBH 0.0 0.0 1.719906
Nipponbare | IRGSP 1.0 | RAP-db Os01g0206800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0007860 RBH 0.0 0.0 3.196695
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0007500 RBH 0.0 0.0 5.071156
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0007020 SBH 0.000000 0.000000 1.885929
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0007350 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0007500 RBH 0.0 1.583267 12.319390
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0095700 RBH 0.6730615 0.3461305 0.3247435
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0007410 RBH 0.036184 0.0 3.418427
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0095700 RBH 0.5190295 0.2680305 2.079206
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0007270 RBH 0.0 0.055713 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0007460 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0007460 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0007450 RBH 0.000000 0.169070 0.869446
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0007380 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G007470 RBH 0.071919 0.0 1.275727
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0007280 RBH 0.000000 0.0 8.039213
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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