Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_01g0007500 | OGI:01018890 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr01:5802083-5806035 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctccaacaatttcattttatcttatcttgctgattagcttcaagttaatggaataacagcagcgaacttgcttgatttttacactgatcaaacttataaatattcatacaaatcacattccattcttgtgtaaagatcaatgcacattagacccaatagttgcacatctgtcacacgacattttttttcataggatcaagaacatgaattctgcacataaacaggctttttcctttagccttgtgaagagggatgctgccgcgagtattggttcaccagcaacagtatacatcactgatcaatctactaggttgcctctgcagagagtatctcgagctcagcccaccagagaggcgagagccgcggcgtcgctgcctccggcgagatgttgagagcttgtctcagcttgcgggtggcgtctctcatcgtcggcctctgatctgagtcgggatcaatgcactcctgaatcacctcgcagacggcctccagctcgttggcgttgtgttccttcagcgacgcgtcgacgagcttgctgtagctcttgcccttcagatactcagcggcctgtggcaaagggagattcaatttggaattgtgttttgctagaaatcaagcttccttcttaaagaggagaagagttggggttttcttggagtttatttgggtttgcatgattttacccagttgcacatggatttttggtcgtctgcttcagggagctttccggatatgatctctatcagaagcgtgccaaagcagtagacgttgctcgcgatatcaggaggacattcagaacggctgctgctatcctcctttgcagtctttgcttttatggcgacttctttccagataccaacatcagcaatctgcacaagaagagtacatagcatcacactagctcaagggaagggtcatgctaatcatccattttaatcaattcaaccttgtgtcgtaatgccaaatgacatgttattgagcaacaaattagatgcgcaattcagctgcttcaaatgagtggcaacactacatatgttaccgagatcactacagctaattgaaactgtaccttggcagcataatcatctgtcatgaaaattgtgtcggagcgcatgtcggttatcgcaacaggtggattgagatcatggtgcatgtattggagacagtatgccacacccatgatgatcctcatccttgcagcccagtccagatgctcaaattctttgactgcaaaacaagcgcattcaatgagcagaatagtttccatatgtgtgaggaagtcatgaaaaaataaaacaacttacggtggagatgctcagagagagtgccatttggagcatactcgaacaccatcattctcatgaagggttgattttccaggcaataacctaggaggttgatgaaattcttgtggtttactcttgatagtgtgtctatctacacaagcaaatcaggggattagcgaagatctagcattgaaggatttactgctccaactagaacatgtaggaagccatggacctgttttctgaagcatgtctctgaactcttaggccactctttgagcgacaaaatggcagtggaaacaacactgatctcaactccgctagataatgtccctttgaacacggtgcagctagggaaagtgttgattatgttactgaaatcctcacaagcggcttcgagttcaggtctgtttagctttggaacacctgaatgcaacaatttacatacagaagattaactgcattacctagagactctgaaatataataataaaaaaaagaaatccaaataacttcctgaactgaccatgggccagttccaaatatgaatatcgagcagcttaaatattaattggttcacaaaaggtgagcaggtccttgaaaatttgtcaggctataagagtaatgcaaaatagctatgcaactatgcgaattttgttatagatgatagatttgtacttggcaggtagttcctgttttttctgcatgcaatgtatctacttcccaaaccataaaagcagataggataataagaatgtttacctgttacaaatgctttctgaagtgggccacttagacccgttttccaaggtcctattgccgcacgccctcgcttccgccagaccaagattggagccacaatcaggctaatcagcaatattgcagctggaattatcataaaatatgcccacttgctgtgctttgaaccagacacttcatcggttgattgatttgctgctccagactgcattgcagcagcatcagtatttacagctgattccagaacttcggcctctgaatttgggaatgcagagaatgaaccactccctaaagagagaacatcaatagccctttggatctcttctgaatttacagggccagaagatttagcataattccctgaaagggcaggcagattgccaacttcaccgagcagcctgcggcccacggcacttgcaaaggactgcaaattttgcataatgtgtggctcgcctagacctgacagacataaaacaatgtaaaattaatgtttaatgctgtgcataacaaaaggaagaaaggctgattatttatacaacttttgaatgtgcggttacttgctaggttggtggagtatttctctcggagatcactgaaagaagtccaatccttaaaccccgccctgtaaaataaagatctgttaggtgagataaaacctttagaaattAaaaaaaaatggaaatgattaggaggctataagcaactgaaaaggtaacacaccaaaatagcccacataccagcaacctaattttctgctcaagcatcctgcctgctcatcagatatatcttgaatgtgcaaagaagagatatcatcttggaactgattgtcatgaagtgacctgacagatgataattgctcattatacgaaataactagcagagagtgaagcacccaattagacttacagctgcttgagcagtggcattgccattaattcttctggaatcgttccatccaagttgttgctgctcaaatccagtacttcaagggcagttaaccctccgaactctttgggaattttcccacggaaattgttgtttcgaagaatgctgggtaagcataaccagtaggaataatatcagtcaacccgtggattccacagagcataatccgttgaactagctgaaaagaaactaagttcagatcatccatacagttctaagcactcacagagatttcaaaagttgaagacgtccaatctcaggtgcgagagttcccaccaattctcggcctgttaagttcctacatgttcacacagataagaactcatatgcacaattaagaacatcaatatgccaggataaagaaacatcgtagtaagaaatgcggttttgaacagtcatgctaatgacaaagaacaaaccatttcctgcataaaaaccaccaattttggtatcatcgaaattagttcatttaactacgtttttcacatggaaatgcatcgaacatcaattcaatttggatcttcaggaacaaaaaactaatttagtggcttacacaggagacattgtatcgggggaaaacatagagaaaaacagacttacaaaatctcaactttaccgtcaaagcaatgcacgccggaccatctgcagggcgtggcgtctgccggatcccaatcccgcaaggcgccatgggggtcagcctccaccctctccctcagctcgagcaacgccattcctgcacgcaggaagcacgacgccatgggaggtcagaccaagcaacacggctaccagcctaccaccaccatggcaagctgctcctctggggccgttaccttcgccgttgagcgtggcgccgccgcgccccgcctgcgcctggagcagcacgaggaagacgaagagcaggtgacgcagcgcgtcgcggaggtggggcccgacggtggcgcggcgaggcccccaccgcgcacccat
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| CDS seq | atgggtgcgcggtgggggcctcgccgcgccaccgtcgggccccacctccgcgacgcgctgcgtcacctgctcttcgtcttcctcgtgctgctccaggcgcaggcggggcgcggcggcgccacgctcaacggcgaaggaatggcgttgctcgagctgagggagagggtggaggctgacccccatggcgccttgcgggattgggatccggcagacgccacgccctgcagatggtccggcgtgcattgctttgacggtaaagttgagattttgaacttaacaggccgagaattggtgggaactctcgcacctgagattggacgtcttcaacttttgaaatctctcattcttcgaaacaacaatttccgtgggaaaattcccaaagagttcggagggttaactgcccttgaagtactggatttgagcagcaacaacttggatggaacgattccagaagaattaatggcaatgccactgctcaagcagctgtcacttcatgacaatcagttccaagatgatatctcttctttgcacattcaagatatatctgatgagcaggcaggatgcttgagcagaaaattaggttgctgggcggggtttaaggattggacttctttcagtgatctccgagagaaatactccaccaacctagcaagtctaggcgagccacacattatgcaaaatttgcagtcctttgcaagtgccgtgggccgcaggctgctcggtgaagttggcaatctgcctgccctttcagggaattatgctaaatcttctggccctgtaaattcagaagagatccaaagggctattgatgttctctctttagggagtggttcattctctgcattcccaaattcagaggccgaagttctggaatcagctgtaaatactgatgctgctgcaatgcagtctggagcagcaaatcaatcaaccgatgaagtgtctggttcaaagcacagcaagtgggcatattttatgataattccagctgcaatattgctgattagcctgattgtggctccaatcttggtctggcggaagcgagggcgtgcggcaataggaccttggaaaacgggtctaagtggcccacttcagaaagcatttgtaacaggtgttccaaagctaaacagacctgaactcgaagccgcttgtgaggatttcagtaacataatcaacactttccctagctgcaccgtgttcaaagggacattatctagcggagttgagatcagtgttgtttccactgccattttgtcgctcaaagagtggcctaagatcaaagaatttgagcatctggactgggctgcaaggatgaggatcatcatgggtgtggcatactgtctccaatacatgcaccatgatctcaatccacctgttgcgataaccgacatgcgctccgacacaattttcatgacagatgattatgctgccaagattgctgatgttggtatctggaaagaagtcgccataaaagcaaagactgcaaaggaggatagcagcagccgttctgaatgtcctcctgatatcgcgagcaacgtctactgctttggcacgcttctgatagagatcatatccggaaagctccctgaagcagacgaccaaaaatccatgtgcaactgggccgctgagtatctgaagggcaagagctacagcaagctcgtcgacgcgtcgctgaaggaacacaacgccaacgagctggaggccgtctgcgaggtgattcaggagtgcattgatcccgactcagatcagaggccgacgatgagagacgccacccgcaagctgagacaagctctcaacatctcgccggaggcagcgacgccgcggctctcgcctctctggtgggctgagctcgagatactctctgcagaggcaacctag
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| Protein seq | MGARWGPRRATVGPHLRDALRHLLFVFLVLLQAQAGRGGATLNGEGMALLELRERVEADPHGALRDWDPADATPCRWSGVHCFDGKVEILNLTGRELVGTLAPEIGRLQLLKSLILRNNNFRGKIPKEFGGLTALEVLDLSSNNLDGTIPEELMAMPLLKQLSLHDNQFQDDISSLHIQDISDEQAGCLSRKLGCWAGFKDWTSFSDLREKYSTNLASLGEPHIMQNLQSFASAVGRRLLGEVGNLPALSGNYAKSSGPVNSEEIQRAIDVLSLGSGSFSAFPNSEAEVLESAVNTDAAAMQSGAANQSTDEVSGSKHSKWAYFMIIPAAILLISLIVAPILVWRKRGRAAIGPWKTGLSGPLQKAFVTGVPKLNRPELEAACEDFSNIINTFPSCTVFKGTLSSGVEISVVSTAILSLKEWPKIKEFEHLDWAARMRIIMGVAYCLQYMHHDLNPPVAITDMRSDTIFMTDDYAAKIADVGIWKEVAIKAKTAKEDSSSRSECPPDIASNVYCFGTLLIEIISGKLPEADDQKSMCNWAAEYLKGKSYSKLVDASLKEHNANELEAVCEVIQECIDPDSDQRPTMRDATRKLRQALNISPEAATPRLSPLWWAELEILSAEAT |
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| Function | Protein MALE DISCOVERER 2 [UniProtKB/Swiss-Prot:C0LGQ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0007500 | OsPr106_01g0007500.01 | Chr01 | 5802083 | 5806035 | - | NAM | ||
| CDS seq | atgggtgcgcggtgggggcctcgccgcgccaccgtcgggccccacctccgcgacgcgctgcgtcacctgctcttcgtcttcctcgtgctgctccaggcgcaggcggggcgcggcggcgccacgctcaacggcgaaggaatggcgttgctcgagctgagggagagggtggaggctgacccccatggcgccttgcgggattgggatccggcagacgccacgccctgcagatggtccggcgtgcattgctttgacggtaaagttgagattttgaacttaacaggccgagaattggtgggaactctcgcacctgagattggacgtcttcaacttttgaaatctctcattcttcgaaacaacaatttccgtgggaaaattcccaaagagttcggagggttaactgcccttgaagtactggatttgagcagcaacaacttggatggaacgattccagaagaattaatggcaatgccactgctcaagcagctgtcacttcatgacaatcagttccaagatgatatctcttctttgcacattcaagatatatctgatgagcaggcaggatgcttgagcagaaaattaggttgctgggcggggtttaaggattggacttctttcagtgatctccgagagaaatactccaccaacctagcaagtctaggcgagccacacattatgcaaaatttgcagtcctttgcaagtgccgtgggccgcaggctgctcggtgaagttggcaatctgcctgccctttcagggaattatgctaaatcttctggccctgtaaattcagaagagatccaaagggctattgatgttctctctttagggagtggttcattctctgcattcccaaattcagaggccgaagttctggaatcagctgtaaatactgatgctgctgcaatgcagtctggagcagcaaatcaatcaaccgatgaagtgtctggttcaaagcacagcaagtgggcatattttatgataattccagctgcaatattgctgattagcctgattgtggctccaatcttggtctggcggaagcgagggcgtgcggcaataggaccttggaaaacgggtctaagtggcccacttcagaaagcatttgtaacaggtgttccaaagctaaacagacctgaactcgaagccgcttgtgaggatttcagtaacataatcaacactttccctagctgcaccgtgttcaaagggacattatctagcggagttgagatcagtgttgtttccactgccattttgtcgctcaaagagtggcctaagatcaaagaatttgagcatctggactgggctgcaaggatgaggatcatcatgggtgtggcatactgtctccaatacatgcaccatgatctcaatccacctgttgcgataaccgacatgcgctccgacacaattttcatgacagatgattatgctgccaagattgctgatgttggtatctggaaagaagtcgccataaaagcaaagactgcaaaggaggatagcagcagccgttctgaatgtcctcctgatatcgcgagcaacgtctactgctttggcacgcttctgatagagatcatatccggaaagctccctgaagcagacgaccaaaaatccatgtgcaactgggccgctgagtatctgaagggcaagagctacagcaagctcgtcgacgcgtcgctgaaggaacacaacgccaacgagctggaggccgtctgcgaggtgattcaggagtgcattgatcccgactcagatcagaggccgacgatgagagacgccacccgcaagctgagacaagctctcaacatctcgccggaggcagcgacgccgcggctctcgcctctctggtgggctgagctcgagatactctctgcagaggcaacctag
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| Protein seq | MGARWGPRRATVGPHLRDALRHLLFVFLVLLQAQAGRGGATLNGEGMALLELRERVEADPHGALRDWDPADATPCRWSGVHCFDGKVEILNLTGRELVGTLAPEIGRLQLLKSLILRNNNFRGKIPKEFGGLTALEVLDLSSNNLDGTIPEELMAMPLLKQLSLHDNQFQDDISSLHIQDISDEQAGCLSRKLGCWAGFKDWTSFSDLREKYSTNLASLGEPHIMQNLQSFASAVGRRLLGEVGNLPALSGNYAKSSGPVNSEEIQRAIDVLSLGSGSFSAFPNSEAEVLESAVNTDAAAMQSGAANQSTDEVSGSKHSKWAYFMIIPAAILLISLIVAPILVWRKRGRAAIGPWKTGLSGPLQKAFVTGVPKLNRPELEAACEDFSNIINTFPSCTVFKGTLSSGVEISVVSTAILSLKEWPKIKEFEHLDWAARMRIIMGVAYCLQYMHHDLNPPVAITDMRSDTIFMTDDYAAKIADVGIWKEVAIKAKTAKEDSSSRSECPPDIASNVYCFGTLLIEIISGKLPEADDQKSMCNWAAEYLKGKSYSKLVDASLKEHNANELEAVCEVIQECIDPDSDQRPTMRDATRKLRQALNISPEAATPRLSPLWWAELEILSAEAT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.583267 | 12.319390 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0206800 | RBH | 0.0 | 0.0 | 5.828360 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g10900 | RBH | 0.0 | 0.0 | 1.719906 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0206800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0007860 | RBH | 0.0 | 0.0 | 3.196695 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0007500 | RBH | 0.0 | 0.0 | 5.071156 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0007820 | RBH | 0.061839 | 0.0 | 5.953287 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0007350 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0007170 | SBH | 0.0 | 6.693599 | 2.198930 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0095700 | RBH | 0.6730615 | 0.3461305 | 0.3247435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0007410 | RBH | 0.036184 | 0.0 | 3.418427 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0095700 | RBH | 0.5190295 | 0.2680305 | 2.079206 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0007270 | RBH | 0.0 | 0.055713 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0007460 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0007460 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0007450 | RBH | 0.000000 | 0.169070 | 0.869446 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0007380 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G007470 | RBH | 0.071919 | 0.0 | 1.275727 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007280 | RBH | 0.000000 | 0.0 | 8.039213 |
