Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_01g0007280 OGI:01018890 | 16/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr01:5734098-5738518
Gene Symbol -
DNA seq

ctccaacaatttcattttatcttatcttgctgattagcttcaagttaatggaataacagcagcgaacttgcttgatttttacactgatcaaacttataaatattcatacaaatcacattccattcttgtgtaaagatcaatgcgcattagacccaatagttgcacatctgtcacacgacaTttttttcataggatcaaGAACATgaattctgcacataaacaggctttttcctttagccttgtgaagagggatgctgccgcgagtattggttcaccagCAAcagtatacatcactgatcaatctactaggttgcctctgcagagagtatctcgagctcagcccaccagagaggcgagagccgcggcgtcgctgcctccggcgagatgttgagagcttgtctcagcttgcgggtggcgtctctcatcgttggcctcttatctgagtcgggatcaatgcactcctgaaccacctcgcagacggcctccagctcgttggcgttgtgttccttcagcgacgcgtcgacgagcttgctgtagctcttgcccttcagatactcagcggcctgtggcaaagggagattcaatttggaattgtgttttgctagaaatcaagtttccttcttaaagaggagaagagttggggttttcttggagtttaTttgggtttgcatgattttacccagttgcacatggattcttggtcgtctgcttcagggagctttccggatatgatctctatcagaagcgtgccaaagcagtagacgttgctcgcgatatcaggaggacattcagaacggctgctgctatcctcctttgcagtctttgcttttatggcgacttctttccagataccaacatcagcaatctgcacaagaagagtacatagcatcacactagctcaagggaagggtcatgttaatcatccattttaatcaattcaaccttgtgtcgtaatgccaaatgacatgttattgcgcaacaaattagatgcgcaattcagctgcttcaaatgagtggcaacactacAtatgttaccgagatcactacagctaattgaaactgtaccttggcagcataatcatctgtcatgaaaattgtgtcggagcgcatgtcggttatcgcaacaggTggattgagatcatggtgcatgtattggagacagtatgccacacccatgatgatcctcatccttgcagcccagtccagatgctcaaattctttgactgcaaaataagcgcattcaatgagcagaatagtttccatatgcgtgaggaagtcatgaaaaaataaaacaacttacggtggagatgctcagagagagtgccatttggagcatactcgaacaccatcattctcatgaagggttgattttccaggcaataacctaggaggttgatgAaattcttgtggtttactcttgatagtgtgtctatctacacaagcaaatcaggggattagcgaagatctagcattgaaggatttactgctccaactagaacatgtaggaagccatggaccttttttctgaagcatgtctctgaactcttaggccactctttgagcgacAaaatggcagtggaaacaacactgatctcaactccgctagataatgtccctttgaacacggtgcagctagggaaagtgttgattatgttactgaaatcctcacaagcggcttcgagttcaggtctgtttagctttggaacacctgaatgcaacaatttacatacagaagattaactgcattacctagagactctgaaatataataataataaaaaagaaatccaaataatttcctgaactgaccatgggccagttccaaatatgaatatcgagcagtttaaatattaattggttcacaaaaggtgagcaggtctttgaaaatttgtcaggctataagagtaatgcaaaatagctatgcaactatgcgaattttgttatagatgatagatttgtacttggcaggtagttcctgttttttctgcatgcaatgtatctacttcccaaaccataaaagcagataggATaataagaatgtttacctgttacaaatgctttctgaagtgggccacttagacccgttttccaaggtcctattgccgcacgccctcgcttccgccagaccaagattggagccacaatcaggctaatcagcaatattgcagctggaattatcataaaatatgcccacttgctgtgctttgaaccagacacttcatcggttgattgatttgctgctccagactgcattgcagcagcatcagtatttacagctgattccagaacttcggcctctgaatttgggaatgcagagaatgaaccactccctaaagagagaacatcaatagccctttggatctcttctgaatttacagggccagaagatttagcatcattccctgaaagggcaggcagattgccaacttcaccgagcagcctgcggcccacggcacttgcaaaggactgcaaattttgcataatgtgtggctcgcctagacctgacagacataaaacaatgtaaaattaatgtttaatgctgtgcataacaaaaggaagaaagactgattatttatacaacttttgaatgtgcggttacttgctaggttggtggagtatttctctcggagatcactgaaagaagtccaatccttaaaccccaccctgtaaaataaagatctgttaggaggtgagataaaacctttagaaattaaaaaaaaaatggaaatgaTtaggaggctataagcaactgaaaaggtaacaccAaaatagcccacataccagcaacctaattttctgctcaagcatcctgcctgctcatcagatatatcttgaatgtgcaaagaagagatatcatcttggaactgattgtcatgaagtgacctgacagatgataattgctcattatacgaaataactagcagagagtgaagcacccaattagacttacagctgcttgagcagtggcattgccattaattcttctggaatcgttccatccaagttgttgctgctcaaatccagtacttcaagggcagttaaccctccgaactctttgggaattttcccacggaaattgttgtttcgaagtatgctgggtaagcataaccagtaggaataatatcagtcaacccgtggattccacagagcataatccgttgaactagctgaaaagaaactaagttcagatcatccatacagttctaagcactcacagagatttcaaaagttgaagacgtccaatctcaggtgcgagagttcccaccaattctcggCctgttaagttcctacatgttcacacagataagaactcatatgcAcaattaaGaacatcaatatgccaggataaagaaacatcgtagtaagaaatgcggttttgaacagtcatgctaatgacaaagaacaaaccatttcctgcataaaaaccaccaattgtggtatcatcgaaattagttcatttaactacgtttttcacatggaaatgcatcgaacatcaattcaatttggagcttcaggaacaaaaaactaatttagtggcttacacaggagacattgtattgggggaaaacatagagaaaaacagacttacAaaatctcaactttaccgtcaaagcaatgcacgccggaccatctgcagggcgtggcgtctgccggatcccaatcccgcaaggcgccatgggggtcagcctccaccctctccctcagctcgagcaacgccattcctgcacgcaggaagcacgacgccatgggaggtcagaccaagcaacacggctaccagcctaccaccaccatggcaagctgctcctctggggccgttaccttcgccgttgagcgtggcgccgccgCgccccgcctgcgcctggagcagcaCgaggaagacgaagagcaggtgacgcagcgcgtcgcggaggtggggcccgacggtggcgcggcgaggCccccaccgcgcacccatggcgacgggggaggagcgcctcccggacaatggcagcccggcggccacccgccgctgccgccgccctcttccggccgagaaTGtggggggagggaatcaagaaccagacgaagcttagcgaaacaaccgcggcgagcagaggcgctggctccggtcgatctcttcctctccggcctcacgacgccgggaaaacaagatcacaagaggacgacgacgacgacgacgacgacacgacgccgcgggcgctggcttagcccggcaaagccccgagggaggccgagctatccgccggaggatcccatgggtcgcctcgcccgcgccgggacggtgtctctgcggcggcgtcggcgaagagctggtgctgtcagcggcggagatggacgtggacgggttctcgtcgggatcGggtggtcggacgacgacgagggcggcggcgcgaagggggtgGTgggggggatttcgcgcg

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CDS seq

atgggtgcgcggtggggGcctcgccgcgccaccgtcgggccccacctccgcgacgcgctgcgtcacctgctcttcgtcttcctcGtgctgctccaggcgcaggcggggcGcggcggcgccacgctcaacggcgaaggaatggcgttgctcgagctgagggagagggtggaggctgacccccatggcgccttgcgggattgggatccggcagacgccacgccctgcagatggtccggcgtgcattgctttgacggtaaagttgagatttTgaacttaacagGccgagaattggtgggaactctcgcacctgagattggacgtcttcaacttttgaaatctctcatacttcgaaacaacaatttccgtgggaaaattcccaaagagttcggagggttaactgcccttgaagtactggatttgagcagcaacaacttggatggaacgattccagaagaattaatggcaatgccactgctcaagcagctgtcacttcatgacaatcagttccaagatgatatctcttctttgcacattcaagatatatctgatgagcaggcaggatgcttgagcagaaaattaggttgctgggtggggtttaaggattggacttctttcagtgatctccgagagaaatactccaccaacctagcaagtaaccgcacattcaaaagtctaggcgagccacacattatgcaaaatttgcagtcctttgcaagtgccgtgggccgcaggctgctcggtgaagttggcaatctgcctgccctttcagggaatgatgctaaatcttctggccctgtaaattcagaagagatccaaagggctattgatgttctctctttagggagtggttcattctctgcattcccaaattcagaggccgaagttctggaatcagctgtaaatactgatgctgctgcaatgcagtctggagcagcaaatcaatcaaccgatgaagtgtctggttcaaagcacagcaagtgggcatattttatgataattccagctgcaatattgctgattagcctgattgtggctccaatcttggtctggcggaagcgagggcgtgcggcaataggaccttggaaaacgggtctaagtggcccacttcagaaagcatttgtaacaggtgttccaaagctaaacagacctgaactcgaagccgcttgtgaggatttcagtaacataatcaacactttccctagctgcaccgtgttcaaagggacattatctagcggagttgagatcagtgttgtttccactgccatttTgtcgctcaaagagtggcctaagagttcagagacatgcttcagaaaaaagatagacacactatcaagagtaaaccacaagaattTcatcaacctcctaggttattgcctggaaaatcaacccttcatgagaatgatggtgttcgagtatgctccaaatggcactctctctgagcatctccacctcaaagaatttgagcatctggactgggctgcaaggatgaggatcatcatgggtgtggcatactgtctccaatacatgcaccatgatctcaatccAcctgttgcgataaccgacatgcgctccgacacaattttcatgacagatgattatgctgccaagattgctgatgttggtatctggaaagaagtcgccataaaagcaaagactgcaaaggaggatagcagcagccgttctgaatgtcctcctgatatcgcgagcaacgtctactgctttggcacgcttctgatagagatcatatccggaaagctccctgaagcagacgaccaagaatccatgtgcaactgggccgctgagtatctgaagggcaagagctacagcaagctcgtcgacgcgtcgctgaaggaacacaacgccaacgagctggaggccgtctgcgaggtggttcaggagtgcattgatcccgactcagataagaggccaacgatgagagacgccacccgcaagctgagacaagctctcaacatctcgccggaggcagcgacgccgcggctctcgcctctctggtgggctgagctcgagatactctctgcagaggcaacctag

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Protein seq

MGARWGPRRATVGPHLRDALRHLLFVFLVLLQAQAGRGGATLNGEGMALLELRERVEADPHGALRDWDPADATPCRWSGVHCFDGKVEILNLTGRELVGTLAPEIGRLQLLKSLILRNNNFRGKIPKEFGGLTALEVLDLSSNNLDGTIPEELMAMPLLKQLSLHDNQFQDDISSLHIQDISDEQAGCLSRKLGCWVGFKDWTSFSDLREKYSTNLASNRTFKSLGEPHIMQNLQSFASAVGRRLLGEVGNLPALSGNDAKSSGPVNSEEIQRAIDVLSLGSGSFSAFPNSEAEVLESAVNTDAAAMQSGAANQSTDEVSGSKHSKWAYFMIIPAAILLISLIVAPILVWRKRGRAAIGPWKTGLSGPLQKAFVTGVPKLNRPELEAACEDFSNIINTFPSCTVFKGTLSSGVEISVVSTAILSLKEWPKSSETCFRKKIDTLSRVNHKNFINLLGYCLENQPFMRMMVFEYAPNGTLSEHLHLKEFEHLDWAARMRIIMGVAYCLQYMHHDLNPPVAITDMRSDTIFMTDDYAAKIADVGIWKEVAIKAKTAKEDSSSRSECPPDIASNVYCFGTLLIEIISGKLPEADDQESMCNWAAEYLKGKSYSKLVDASLKEHNANELEAVCEVVQECIDPDSDKRPTMRDATRKLRQALNISPEAATPRLSPLWWAELEILSAEAT

Function Protein MALE DISCOVERER 2 [UniProtKB/Swiss-Prot:C0LGQ4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_01g0007280 OsNaBo_01g0007280.02 Chr01 5734144 5738518 - NAM
CDS seq

atgggtgcgcggtggggGcctcgccgcgccaccgtcgggccccacctccgcgacgcgctgcgtcacctgctcttcgtcttcctcGtgctgctccaggcgcaggcggggcGcggcggcgccacgctcaacggcgaaggaatggcgttgctcgagctgagggagagggtggaggctgacccccatggcgccttgcgggattgggatccggcagacgccacgccctgcagatggtccggcgtgcattgctttgacggtaaagttgagatttTgaacttaacagGccgagaattggtgggaactctcgcacctgagattggacgtcttcaacttttgaaatctctcatacttcgaaacaacaatttccgtgggaaaattcccaaagagttcggagggttaactgcccttgaagtactggatttgagcagcaacaacttggatggaacgattccagaagaattaatggcaatgccactgctcaagcagctgtcacttcatgacaatcagttccaagatgatatctcttctttgcacattcaagatatatctgatgagcaggcaggatgcttgagcagaaaattaggttgctgggtggggtttaaggattggacttctttcagtgatctccgagagaaatactccaccaacctagcaagtaaccgcacattcaaaagtctaggcgagccacacattatgcaaaatttgcagtcctttgcaagtgccgtgggccgcaggctgctcggtgaagttggcaatctgcctgccctttcagggaatgatgctaaatcttctggccctgtaaattcagaagagatccaaagggctattgatgttctctctttagggagtggttcattctctgcattcccaaattcagaggccgaagttctggaatcagctgtaaatactgatgctgctgcaatgcagtctggagcagcaaatcaatcaaccgatgaagtgtctggttcaaagcacagcaagtgggcatattttatgataattccagctgcaatattgctgattagcctgattgtggctccaatcttggtctggcggaagcgagggcgtgcggcaataggaccttggaaaacgggtctaagtggcccacttcagaaagcatttgtaacaggtgttccaaagctaaacagacctgaactcgaagccgcttgtgaggatttcagtaacataatcaacactttccctagctgcaccgtgttcaaagggacattatctagcggagttgagatcagtgttgtttccactgccatttTgtcgctcaaagagtggcctaagagttcagagacatgcttcagaaaaaagatagacacactatcaagagtaaaccacaagaattTcatcaacctcctaggttattgcctggaaaatcaacccttcatgagaatgatggtgttcgagtatgctccaaatggcactctctctgagcatctccacctcaaagaatttgagcatctggactgggctgcaaggatgaggatcatcatgggtgtggcatactgtctccaatacatgcaccatgatctcaatccAcctgttgcgataaccgacatgcgctccgacacaattttcatgacagatgattatgctgccaagattgctgatgttggtatctggaaagaagtcgccataaaagcaaagactgcaaaggaggatagcagcagccgttctgaatgtcctcctgatatcgcgagcaacgtctactgctttggcacgcttctgatagagatcatatccggaaagctccctgaagcagacgaccaagaatccatgtgcaactgggccgctgagtatctgaagggcaagagctacagcaagctcgtcgacgcgtcgctgaaggaacacaacgccaacgagctggaggccgtctgcgaggtggttcaggagtgcattgatcccgactcagataagaggccaacgatgagagacgccacccgcaagctgagacaagctctcaacatctcgccggaggcagcgacgccgcggctctcgcctctctggtgggctgagctcgagatactctctgcagaggcaacctag

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Protein seq

MGARWGPRRATVGPHLRDALRHLLFVFLVLLQAQAGRGGATLNGEGMALLELRERVEADPHGALRDWDPADATPCRWSGVHCFDGKVEILNLTGRELVGTLAPEIGRLQLLKSLILRNNNFRGKIPKEFGGLTALEVLDLSSNNLDGTIPEELMAMPLLKQLSLHDNQFQDDISSLHIQDISDEQAGCLSRKLGCWVGFKDWTSFSDLREKYSTNLASNRTFKSLGEPHIMQNLQSFASAVGRRLLGEVGNLPALSGNDAKSSGPVNSEEIQRAIDVLSLGSGSFSAFPNSEAEVLESAVNTDAAAMQSGAANQSTDEVSGSKHSKWAYFMIIPAAILLISLIVAPILVWRKRGRAAIGPWKTGLSGPLQKAFVTGVPKLNRPELEAACEDFSNIINTFPSCTVFKGTLSSGVEISVVSTAILSLKEWPKSSETCFRKKIDTLSRVNHKNFINLLGYCLENQPFMRMMVFEYAPNGTLSEHLHLKEFEHLDWAARMRIIMGVAYCLQYMHHDLNPPVAITDMRSDTIFMTDDYAAKIADVGIWKEVAIKAKTAKEDSSSRSECPPDIASNVYCFGTLLIEIISGKLPEADDQESMCNWAAEYLKGKSYSKLVDASLKEHNANELEAVCEVVQECIDPDSDKRPTMRDATRKLRQALNISPEAATPRLSPLWWAELEILSAEAT

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Gene Transcript Chromosome Start End Strand Source
OsNaBo_01g0007280 OsNaBo_01g0007280.01 Chr01 5734098 5738518 - NAM
CDS seq

atgggtgcgcggtggggGcctcgccgcgccaccgtcgggccccacctccgcgacgcgctgcgtcacctgctcttcgtcttcctcGtgctgctccaggcgcaggcggggcGcggcggcgccacgctcaacggcgaaggaatggcgttgctcgagctgagggagagggtggaggctgacccccatggcgccttgcgggattgggatccggcagacgccacgccctgcagatggtccggcgtgcattgctttgacggtaaagttgagatttTgaacttaacagGccgagaattggtgggaactctcgcacctgagattggacgtcttcaacttttgaaatctctcatacttcgaaacaacaatttccgtgggaaaattcccaaagagttcggagggttaactgcccttgaagtactggatttgagcagcaacaacttggatggaacgattccagaagaattaatggcaatgccactgctcaagcagctgtcacttcatgacaatcagttccaagatgatatctcttctttgcacattcaagatatatctgatgagcaggcaggatgcttgagcagaaaattaggttgctgggtggggtttaaggattggacttctttcagtgatctccgagagaaatactccaccaacctagcaagtctaggcgagccacacattatgcaaaatttgcagtcctttgcaagtgccgtgggccgcaggctgctcggtgaagttggcaatctgcctgccctttcagggaatgatgctaaatcttctggccctgtaaattcagaagagatccaaagggctattgatgttctctctttagggagtggttcattctctgcattcccaaattcagaggccgaagttctggaatcagctgtaaatactgatgctgctgcaatgcagtctggagcagcaaatcaatcaaccgatgaagtgtctggttcaaagcacagcaagtgggcatattttatgataattccagctgcaatattgctgattagcctgattgtggctccaatcttggtctggcggaagcgagggcgtgcggcaataggaccttggaaaacgggtctaagtggcccacttcagaaagcatttgtaacaggtgttccaaagctaaacagacctgaactcgaagccgcttgtgaggatttcagtaacataatcaacactttccctagctgcaccgtgttcaaagggacattatctagcggagttgagatcagtgttgtttccactgccatttTgtcgctcaaagagtggcctaagagttcagagacatgcttcagaaaaaagatagacacactatcaagagtaaaccacaagaattTcatcaacctcctaggttattgcctggaaaatcaacccttcatgagaatgatggtgttcgagtatgctccaaatggcactctctctgagcatctccacctcaaagaatttgagcatctggactgggctgcaaggatgaggatcatcatgggtgtggcatactgtctccaatacatgcaccatgatctcaatccAcctgttgcgataaccgacatgcgctccgacacaattttcatgacagatgattatgctgccaagattgctgatgttggtatctggaaagaagtcgccataaaagcaaagactgcaaaggaggatagcagcagccgttctgaatgtcctcctgatatcgcgagcaacgtctactgctttggcacgcttctgatagagatcatatccggaaagctccctgaagcagacgaccaagaatccatgtgcaactgggccgctgagtatctgaagggcaagagctacagcaagctcgtcgacgcgtcgctgaaggaacacaacgccaacgagctggaggccgtctgcgaggtggttcaggagtgcattgatcccgactcagataagaggccaacgatgagagacgccacccgcaagctgagacaagctctcaacatctcgccggaggcagcgacgccgcggctctcgcctctctggtgggctgagctcgagatactctctgcagaggcaacctag

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Protein seq

MGARWGPRRATVGPHLRDALRHLLFVFLVLLQAQAGRGGATLNGEGMALLELRERVEADPHGALRDWDPADATPCRWSGVHCFDGKVEILNLTGRELVGTLAPEIGRLQLLKSLILRNNNFRGKIPKEFGGLTALEVLDLSSNNLDGTIPEELMAMPLLKQLSLHDNQFQDDISSLHIQDISDEQAGCLSRKLGCWVGFKDWTSFSDLREKYSTNLASLGEPHIMQNLQSFASAVGRRLLGEVGNLPALSGNDAKSSGPVNSEEIQRAIDVLSLGSGSFSAFPNSEAEVLESAVNTDAAAMQSGAANQSTDEVSGSKHSKWAYFMIIPAAILLISLIVAPILVWRKRGRAAIGPWKTGLSGPLQKAFVTGVPKLNRPELEAACEDFSNIINTFPSCTVFKGTLSSGVEISVVSTAILSLKEWPKSSETCFRKKIDTLSRVNHKNFINLLGYCLENQPFMRMMVFEYAPNGTLSEHLHLKEFEHLDWAARMRIIMGVAYCLQYMHHDLNPPVAITDMRSDTIFMTDDYAAKIADVGIWKEVAIKAKTAKEDSSSRSECPPDIASNVYCFGTLLIEIISGKLPEADDQESMCNWAAEYLKGKSYSKLVDASLKEHNANELEAVCEVVQECIDPDSDKRPTMRDATRKLRQALNISPEAATPRLSPLWWAELEILSAEAT

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A5 Chr01 5736598 5736697 - OsNaBo_01g0007280.02 OsNaBo_01g0007280.02,OsNaBo_01g0007280.01 All

Expression

Leaf Root Panicle
FPKM 0.000000 0.0 8.039213

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0206800 RBH 0.0 0.0 5.828360
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g10900 RBH 0.0 0.0 1.719906
Nipponbare | IRGSP 1.0 | RAP-db Os01g0206800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0007860 RBH 0.0 0.0 3.196695
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0007500 RBH 0.0 0.0 5.071156
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0007820 RBH 0.061839 0.0 5.953287
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0007350 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0007500 RBH 0.0 1.583267 12.319390
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0095700 RBH 0.6730615 0.3461305 0.3247435
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0007410 RBH 0.036184 0.0 3.418427
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0095700 RBH 0.5190295 0.2680305 2.079206
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0007270 RBH 0.0 0.055713 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0007460 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0007460 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0007450 RBH 0.000000 0.169070 0.869446
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0007380 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G007470 RBH 0.071919 0.0 1.275727
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0007140 SBH 0.0 2.024158 1.330381
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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