Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0019900 | OGI:07004740 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:22692840-22694794 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagatgactgtgaaaatctgcagagagaaattggtggtgcaaagtacattgccactggcatctttggtggaaggtctggtaatggtgcttcaaacttcagtacgcttatgacctggcgaattgaaggccggatattataatctgggtgtgcacaccaaagtccaacaaccatcaaggaaataacttcccgctcttcaaattcaccatcaagccttccatcaattgcattaagtatctcatttcttccataaagatcccaaacccattgaaccaaactgatcctgtcattatcttcctttggcacaacgggcctccttccacaagctatctccagagcaagaatgccaaagctgtagacatcagtctctttgcttgctttcccagtagtgacacactctggagccatgtaacccatggtcccagctatcactgtagtttgtgagcctcggtcatggtctacaagccgtgcgagcccaaagtccccaagcttagcgttgaatccagaatcaagcatcacattgcttggcttgacatcacgatgcacgacacattgttcccactcctcgtggagatacaggagggcggatgcaacacctatggttatcttgaaccgcaatggccatgctaacaggtttccaccatcatagaggtgtttgtccaagctcctgtttggcataaactcgtagactaacaagaactctccatgctcatgacaccagcccacaagttgcacaagattccgatgccttagtctgctgatgatcttgacctcagagatgtactccttcctcccctgtgttgacccttttgcaactcgttttatggcaatttcaatgttttgatccttcaagaaaccctggtatactgcaccgaaacccccttctccaagctttctctctgcagcaaaattatccgtcgccactacgagttcattgtattggaatctccttggccccttgcctttctcaaactcactgtcaatggactcatcacagtctagtttctctttttccttctctcttgaccttgtagtccttctaatccttctaaaacataaaaagaagcaaaccaagccaattgagcagaccacaacactaccgctcgtagacaagcttatgaccaatataccttttgttttctcagtcttcatcaggtgcacatctgtagaatcaaattcccagtaaagaatctggtgcagctctacaaatttacctgtggaagcagagaatccgatggacactttgtcagggagatatttgctgagatcaaccgaataagataggctggagttgccactgaattgtgggttgtcctggtacgacaagaagacactcaagttccttgaatttgcctggtaagttacccaagcattggctatccggccatcgttgatactacttcgccatgtcacgttggctacagatacaattgagtggatgttgatgcctacatggttgccatctggatcccaagtgtttttgtggctgtcaaactcaacagccacaatctggttgagtggatcgctctgatcattactattgctgaagaggccaagataaccatccatggagttattggggaccacagaagggtatgatgagaggaagaaggctaggccctcaccgtacgaactgtcgttcgtgggtgcatatatcttgaacgtgaagcgggttgtgaagctggctaactgaccggtggtgctatcccagagaggcactggatcggtgtagattgctcggcctacgctttgagtgatctttccattcaactcatccttggtgagcttgaccgccttgttgtagaaggcatcctcctggagctgaattgtggctgatccattatgatttgattcagtgaagttcaacttgaaggacagaggattgacatgggcaattttcagggatagggaaaagtagagagccaagaggcaagtatatttggttcttgatcgcat
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| CDS seq | atgcgatcaagaaccaaatatacttgcctcttggctctctacttttccctatccctgaaaattgcccatgtcaatcctctgtccttcaagttgaacttcactgaatcaaatcataatggatcagccacaattcagctccaggaggatgccttctacaacaaggcggtcaagctcaccaaggatgagttgaatggaaagatcactcaaagcgtaggccgagcaatctacaccgatccagtgcctctctgggatagcaccaccggtcagttagccagcttcacaacccgcttcacgttcaagatatatgcacccacgaacgacagttcgtacggtgagggcctagccttcttcctctcatcatacccttctgtggtccccaataactccatggatggttatcttggcctcttcagcaatagtaatgatcagagcgatccactcaaccagattgtggctgttgagtttgacagccacaaaaacacttgggatccagatggcaaccatgtaggcatcaacatccactcaattgtatctgtagccaacgtgacatggcgaagtagtatcaacgatggccggatagccaatgcttgggtaacttaccaggcaaattcaaggaacttgagtgtcttcttgtcgtaccaggacaacccacaattcagtggcaactccagcctatcttattcggttgatctcagcaaatatctccctgacaaagtgtccatcggattctctgcttccacagagagaaagcttggagaagggggtttcggtgcagtataccagggtttcttgaaggatcaaaacattgaaattgccataaaacgagttgcaaaagggtcaacacaggggaggaaggagtacatctctgaggtcaagatcatcagcagactaaggcatcggaatcttgtgcaacttgtgggctggtgtcatgagcatggagagttcttgttagtctacgagtttatgccaaacaggagcttggacaaacacctctatgatggtggaaacctgttagcatggccattgcggttcaagataaccataggtgttgcatccgccctcctgtatctccacgaggagtgggaacaatgtgtcgtgcatcgtgatgtcaagccaagcaatgtgatgcttgattctggattcaacgctaagcttggggactttgggctcgcacggcttgtagaccatgaccgaggctcacaaactacagtgatagctgggaccatgggttacatggctccagagtgtgtcactactgggaaagcaagcaaagagactgatgtctacagctttggcattcttgctctggagatagcttgtggaaggaggcccgttgtgccaaaggaagataatgacaggatcagtttggttcaatgggtttgggatctttatggaagaaatgagatacttaatgcaattgatggaaggcttgatggtgaatttgaagagcgggaaattttcacagtcatctaa
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| Protein seq | MRSRTKYTCLLALYFSLSLKIAHVNPLSFKLNFTESNHNGSATIQLQEDAFYNKAVKLTKDELNGKITQSVGRAIYTDPVPLWDSTTGQLASFTTRFTFKIYAPTNDSSYGEGLAFFLSSYPSVVPNNSMDGYLGLFSNSNDQSDPLNQIVAVEFDSHKNTWDPDGNHVGINIHSIVSVANVTWRSSINDGRIANAWVTYQANSRNLSVFLSYQDNPQFSGNSSLSYSVDLSKYLPDKVSIGFSASTERKLGEGGFGAVYQGFLKDQNIEIAIKRVAKGSTQGRKEYISEVKIISRLRHRNLVQLVGWCHEHGEFLLVYEFMPNRSLDKHLYDGGNLLAWPLRFKITIGVASALLYLHEEWEQCVVHRDVKPSNVMLDSGFNAKLGDFGLARLVDHDRGSQTTVIAGTMGYMAPECVTTGKASKETDVYSFGILALEIACGRRPVVPKEDNDRISLVQWVWDLYGRNEILNAIDGRLDGEFEEREIFTVI |
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| Function | L-type lectin-domain containing receptor kinase IX.1 [UniProtKB/Swiss-Prot:Q9LXA5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0019900 | OsARC_07g0019900.01 | Chr07 | 22692840 | 22694794 | - | NAM | ||
| CDS seq | atgcgatcaagaaccaaatatacttgcctcttggctctctacttttccctatccctgaaaattgcccatgtcaatcctctgtccttcaagttgaacttcactgaatcaaatcataatggatcagccacaattcagctccaggaggatgccttctacaacaaggcggtcaagctcaccaaggatgagttgaatggaaagatcactcaaagcgtaggccgagcaatctacaccgatccagtgcctctctgggatagcaccaccggtcagttagccagcttcacaacccgcttcacgttcaagatatatgcacccacgaacgacagttcgtacggtgagggcctagccttcttcctctcatcatacccttctgtggtccccaataactccatggatggttatcttggcctcttcagcaatagtaatgatcagagcgatccactcaaccagattgtggctgttgagtttgacagccacaaaaacacttgggatccagatggcaaccatgtaggcatcaacatccactcaattgtatctgtagccaacgtgacatggcgaagtagtatcaacgatggccggatagccaatgcttgggtaacttaccaggcaaattcaaggaacttgagtgtcttcttgtcgtaccaggacaacccacaattcagtggcaactccagcctatcttattcggttgatctcagcaaatatctccctgacaaagtgtccatcggattctctgcttccacagagagaaagcttggagaagggggtttcggtgcagtataccagggtttcttgaaggatcaaaacattgaaattgccataaaacgagttgcaaaagggtcaacacaggggaggaaggagtacatctctgaggtcaagatcatcagcagactaaggcatcggaatcttgtgcaacttgtgggctggtgtcatgagcatggagagttcttgttagtctacgagtttatgccaaacaggagcttggacaaacacctctatgatggtggaaacctgttagcatggccattgcggttcaagataaccataggtgttgcatccgccctcctgtatctccacgaggagtgggaacaatgtgtcgtgcatcgtgatgtcaagccaagcaatgtgatgcttgattctggattcaacgctaagcttggggactttgggctcgcacggcttgtagaccatgaccgaggctcacaaactacagtgatagctgggaccatgggttacatggctccagagtgtgtcactactgggaaagcaagcaaagagactgatgtctacagctttggcattcttgctctggagatagcttgtggaaggaggcccgttgtgccaaaggaagataatgacaggatcagtttggttcaatgggtttgggatctttatggaagaaatgagatacttaatgcaattgatggaaggcttgatggtgaatttgaagagcgggaaattttcacagtcatctaa
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| Protein seq | MRSRTKYTCLLALYFSLSLKIAHVNPLSFKLNFTESNHNGSATIQLQEDAFYNKAVKLTKDELNGKITQSVGRAIYTDPVPLWDSTTGQLASFTTRFTFKIYAPTNDSSYGEGLAFFLSSYPSVVPNNSMDGYLGLFSNSNDQSDPLNQIVAVEFDSHKNTWDPDGNHVGINIHSIVSVANVTWRSSINDGRIANAWVTYQANSRNLSVFLSYQDNPQFSGNSSLSYSVDLSKYLPDKVSIGFSASTERKLGEGGFGAVYQGFLKDQNIEIAIKRVAKGSTQGRKEYISEVKIISRLRHRNLVQLVGWCHEHGEFLLVYEFMPNRSLDKHLYDGGNLLAWPLRFKITIGVASALLYLHEEWEQCVVHRDVKPSNVMLDSGFNAKLGDFGLARLVDHDRGSQTTVIAGTMGYMAPECVTTGKASKETDVYSFGILALEIACGRRPVVPKEDNDRISLVQWVWDLYGRNEILNAIDGRLDGEFEEREIFTVI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.040045 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0569550 | RBH | 0.982214 | 0.554307 | 0.576537 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35770 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0569550 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001860 | SBH | 0.794274 | 0.468260 | 0.961358 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0020060 | RBH | 0.176769 | 0.000000 | 0.271799 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0020020 | RBH | 2.671286 | 0.000000 | 2.447297 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0001800 | SBH | 6.989861 | 2.384900 | 3.853860 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0374700 | RBH | 20.124193 | 11.265291 | 1.2987895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0020420 | RBH | 0.065469 | 0.0 | 0.263845 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0387200 | RBH | 0.65419 | 3.043708 | 2.658244 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0019750 | RBH | 0.056242 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0019850 | RBH | 0.102662 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0019800 | RBH | 5.528027 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0019970 | RBH | 0.620445 | 0.161532 | 0.197239 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001890 | SBH | 0.073340 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G019670 | RBH | 1.329423 | 0.0 | 0.912160 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0019760 | RBH | 0.466081 | 1.300868 | 0.858099 |
