Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0109850 | OGI:12001400 | 2/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:533882-535127 | ||||||||
| Gene Symbol | RLCK358, OsRLCK358 | ||||||||||
| DNA seq | ATGGCGTGGGCCTCGGGCAGGCAGCAGCTGCAGTGGGGCGACGCGGTCTCTGGCGCGGCACGGCATCAAGAAAGAGGAAGCAGGTTATGGGTACTTTTGGGTAAGCTTTTCATGCTTTTGTATAATGAATTAATGCGTGTTCTCTTTGTATTATGTTCAAATCTTAACCACTGTAATTTCAGAAAAATTCTGTTGGTGCTAATCACTAATGGTACTCAACAATTGTGTTATTATTTTGCAGCTATGTCGCGCTTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGATGTCTACAGTTTTGGGTGGTTCTGCTGGAAGCTATTACAGGTAGAGATCCCATTGACTATGATCGCCCTCCAGATGAGGTAATACTTGTTGACATCTTTTTCCTGTATTGTTCAGTACCAAGTTATTACATAAAAGCATGCAACTACAATCACTTATGAAGCAATCGAGAAGCTATGAACTTATGATTTGATAAGTACTGTAACACACTACTGATCATTTGTAGGTAAACCTAGTTGACTGGCTTAAAATGATGGTTGCCAACAGACGATCTGAAGAAGTTGTTGATCCAAACCTGGAGAGAAGACCATCGACAAAGGAGCTCAAACGTGCCCTTTTGACAGCTCTGAGGTGCATCGATTTGAATGCTGAGAAGAGACCAAGGATGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAGGTTTGATTCGTGACAAAAATAAATATGCATACATATGATAGGTGATATATCATATACATGTGTGCATATCAGATGCAAAGGCTGTAGCTGTAAACTCTTCCTTTACCTAAAGAGTACGATTAGTGATTTACCTGGAAATCATGCATATTCCTGCTATATTGTGCTATAAGTACATCCAATGTTCATCTCAGAGTAAAATTAGTGACAGATGGACAACGTGAGCAATTTAAATTTATTATATCCTGTATATCTGTCTTAGCAGCATTAGCCGACATAGAGAGCATTGCATAACATGGTATTAAGGTTTGTCATAATGAAATCATGGCTTTATTCTATCATTGCCTCATGAATTAAACACATGTCCACTGATTTGCAGGAAAGAAGACAACGACAGAACCACATCTCTAATAATTTAGAAACCGAGCCATTAAGAGGCAAGAGTAGCAGCGGCAAGAGTGATGCCCCTGAAAATGAGATGAGGCCACCTCGGTATAAGAATCGATCATTTCCCCCCAAGTGA
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| CDS seq | ATGGCGTGGGCCTCGGGCAGGCAGCAGCTGCAGTGGGGCGACGCGGTCTCTGGCGCGGCACGGCATCAAGAAAGAGGAAGCAGCTATGTCGCGCTTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGATGTCTACAGTTTTGGGTGGTTCTGCTGGAAGCTATTACAGGTAAACCTAGTTGACTGGCTTAAAATGATGGTTGCCAACAGACGATCTGAAGAAGTTGTTGATCCAAACCTGGAGAGAAGACCATCGACAAAGGAGCTCAAACGTGCCCTTTTGACAGCTCTGAGGTGCATCGATTTGAATGCTGAGAAGAGACCAAGGATGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAGGAAAGAAGACAACGACAGAACCACATCTCTAATAATTTAGAAACCGAGCCATTAAGAGGCAAGAGTAGCAGCGGCAAGAGTGATGCCCCTGAAAATGAGATGAGGCCACCTCGGTATAAGAATCGATCATTTCCCCCCAAGTGA
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| Protein seq | MAWASGRQQLQWGDAVSGAARHQERGSSYVALEYANSGLLNEKSDVYSFGWFCWKLLQVNLVDWLKMMVANRRSEEVVDPNLERRPSTKELKRALLTALRCIDLNAEKRPRMDQVVRMLDSNEPIPQEERRQRQNHISNNLETEPLRGKSSSGKSDAPENEMRPPRYKNRSFPPK |
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| Function | Probable receptor-like protein kinase At5g18500 [UniProtKB/Swiss-Prot:Q8LEB6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0109850 | Os12t0109850-00 | Chr12 | 533882 | 535127 | + | irgsp1_rep | ||
| CDS seq | ATGGCGTGGGCCTCGGGCAGGCAGCAGCTGCAGTGGGGCGACGCGGTCTCTGGCGCGGCACGGCATCAAGAAAGAGGAAGCAGCTATGTCGCGCTTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGATGTCTACAGTTTTGGGTGGTTCTGCTGGAAGCTATTACAGGTAAACCTAGTTGACTGGCTTAAAATGATGGTTGCCAACAGACGATCTGAAGAAGTTGTTGATCCAAACCTGGAGAGAAGACCATCGACAAAGGAGCTCAAACGTGCCCTTTTGACAGCTCTGAGGTGCATCGATTTGAATGCTGAGAAGAGACCAAGGATGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAGGAAAGAAGACAACGACAGAACCACATCTCTAATAATTTAGAAACCGAGCCATTAAGAGGCAAGAGTAGCAGCGGCAAGAGTGATGCCCCTGAAAATGAGATGAGGCCACCTCGGTATAAGAATCGATCATTTCCCCCCAAGTGA
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| Protein seq | MAWASGRQQLQWGDAVSGAARHQERGSSYVALEYANSGLLNEKSDVYSFGWFCWKLLQVNLVDWLKMMVANRRSEEVVDPNLERRPSTKELKRALLTALRCIDLNAEKRPRMDQVVRMLDSNEPIPQEERRQRQNHISNNLETEPLRGKSSSGKSDAPENEMRPPRYKNRSFPPK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0109850 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01910 | SBH | 0.0 | 0.000000 | 0.075951 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0108800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000590 | SBH | 0.0 | 0.0 | 0.716230 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000780 | SBH | 0.040538 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000750 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000610 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0000720 | SBH | 0.0 | 2.173632 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0008600 | SBH | 0.066011 | 0.0905195 | 0.0047665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000610 | SBH | 0.035184 | 1.311804 | 2.076789 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0008900 | RBH | 0.0311075 | 0.0481035 | 0.492778 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000610 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0000710 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000720 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000720 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0000730 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000620 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000620 | SBH | 0.163879 | 24.996567 | 16.157648 |
