Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0108800 | OGI:11001480 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:397403-401779 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCGCACACAACACAAACTGAAAGTCAATTTTTCTTTCATTTGCCTCTTTATACTCTTAGAGTATACAGAAAATATGAAAAAGTTATTTCATTGGTTTCTTCATGCACTTTCTCACACCAGCAACCATACCAGCCACTAGCTTCTAAATAATAGCTTTTATGCTCTCATGTGCATCCTTCAACTATCTATCACACACAAACTACTGTACATGTATCACACACCAGCACTGTACATGTTTCAAGAAATACAAATATGTGTAACTGCAATGGCCGCTCCCCCAGCCTCCCAGGGAACAAAAAAATTGATCAAGTCAAGAGAAATAATAAAAGAGAAACAAAACAATTGACCAATTCATTATGTATTGAGAGCATCGCAGGTAACTCCATAACTTCCACTCTAGTATGCTTTTCACTTTTCACTTGGGGGGAAATGATCGATTCTTATACCGAGGTGGCCTCATCTCATTTTCAGGGGCATCACTCTTGCCGCTGCTGCTCTTGCCTCTTAATGGCTCGGTCTCTGAATTATTAGAGATGTGGTTCTGTCGTTGTCTTCTTTCCTGCAAATCAATTGACATGTGTTTAATTCATGAGGCAATGACAGAATAAAGCCATGATTTCCTTATGGTAGACATTAATACCATGTTATGCAATGCTCTTTATGTCCGATAATGCTGATAAGACAGGTATATAGGATACAATCAAATAGGATTGCTCATGTTGTCCATCTGTCACTAATTTTACTGTGAGATGAACATTGGATGTACTTATAACACAATATAGCACGAATATGCATGATTTCCAGGTAAATCACTAATCGTACTCTTTAGGTAAAGGAAGAGTTTAGAGCTACAGCCTTTGCATCTGATATGCACACAGCTATATGATATATATGTATGCACATTTATTTTTGAAACGAATCAAACCTCTTGAGGAATGGGTTCATTAGAGTCCAACATCCGGACCACCTGGTCCATCCTTGGTCTCTTCTCAGCATTCAAATCGATGCACCTCAGAGCTGTCAAAAGGGCACGTTTGAGCTCCTTTGTCGATGGTCTTCTCTCCAGGTTTGGATCAACAACTTCTTCAGATCGTCTGTGGGCAACCATCATTTTAAGCCAGTCAACTAGGTTTACCTACAAAAGATCAGTAGTGTGTTACAGTACTTGTCAAATCATAAGTTCATAGCTTCTTGATTGCTTAACAAGTGATTGTAGTTGCATGCTTTTATGTAATAACTTGGTACTGAACAATACAGAAAAAAAATCAACAAGTATTACCTCATCTGTAGGGCGATCATAGTCAATGGGATCTCTACCTGTAATAGCTTCCAGCAGAACCACCCCAAAACTGTAGACATCACTCTTTTCATTCAAAAGTCCACTGTTAGCATACTCAGGCGCGACATAGCTGCAAAATAATAACACAATGTTGAGTACCATTAGTGATTAGCACCAACAGAATTTTTCTGAAATTACAGTGGCCAAGATTTGAACGTAATACAAAGAGAACATGCCTCAATTTATTATACAAAGGCATGAAAAACTTACCCAAAAGTACCCATAACTCGAGTAGCAATATGACTTTTACCAGCACCTAGCATCTTGGCCAAACCAAAGTCAGATATTTTGGCGTTAAACTCATCATCAATCAATATATTACTGGCCTTGATATCACGATGCACAACTTTTGGTTCAATTGCCTCATGTAAGTAAGCAAGGCTGCAAATGTGGTGGTTCGTACAAAATTAGTATTTACCAAGCAGTAAGATGATACAATCTATACTTGTTTTATATTCATGATAGTATAGACAACGACTACTTGTGAACAGTACTGACTAGTAAGCCTTTAATCACAAAGCTGTCAAGATTGTAACATGCACAACAGTTTTTAATAGAGCAGCTATCAAGACTGGATGTGCTTGTGTGAATCAATCAGAAGGCGACATTTTTAGTTCTAAGGCATTTAATGGAATAGATATAGATCCAATCAGTTCACAGTTTGCACCACGCAAAATCACAAATACAATGTTGACAGCAAACAATTGATCTAGAATGGACATTTGAATCCACAAGAAGCAATAGATTAGACTCAGTGATGGAGTTACTCACGCCTTTGCAGTACCCAAAAGAATTTTCATGCGCGCTAGCCAAGTGAGAGAACTATATTGGGATAACTCTCCATGTAACCAACTTTCGAGATTCCCATTGTTGACATACTCATACACAAGCATCCTGATTATCAACGCACAACAAACAATTTCAGTTGAGACACAACAGGTCATAGTCTAAGCAATGAATCCTAATAATACCCATACCTTTGAGTGCCTTCAACACAGTACCCCAAAAGGCGAACCAAATTCTTGTGTCGGACATGACCAATTGCTTCAACTTCCACTCTGAATTCTCTCTCAGCTTGTCCTCTGCCCAAGGCAAGTGGTCATAGCTTAAGTAAAAGGAAGGACAACAAACTAACCAATGCACTGCCACTGCATCACCAAAGAATTGTTATAAGAAAAAACGAAAAATACTCACAGATTGTTAAGGATTTTTTTGACAGCCACTGGGGTGCCATTTGATAATCTGCCACGGTAGACAACACCATATCCACCCTCACCAATTACATTATCCTTTGAAAAACAGTTGGTTGCAAGTTCCAGATCCCTGAGAGTGAACCAATGACCCCAGCCAAGGTAAGAGAACTCAGGTAAGCCTGGCAACAGAACAGAGTCGACGGGAGCATGCGAGGAAGACTGTTCACATGTGGAAACAGATTGAATTACATCATAGTTGTCCACGTAATGAAGAGGAACAGGACTGTTTTCTTCTCCTTGTATCGTCTTGTCCTCTTGAGCAAACTGATTCACATCTTTATCCACTGGTTCAACAGGTTCATTCTGAATGGCGAGTAGAAGCCCATCATGTACAACGAAATCATTGGGCAAAAATTCGTCCACTGCCCTCACTTCCTTGATATCTTTGGATGCAGAAGGTATTTGGGTAATTGGAATTTCCTTGAATGTCCTACGTGACCGTTTGATCCAAGTTTGTAAGGTGAGGCATACAATAAGTATGAGAAGAACACCAAGTAGGGATGCTCCAACAGATATCCCAATTACAACCCAAAGTTTCAGGCCAAAAACAATTGTTCTCTCATGAAGAGAATCTGTCAGAGTGGAGTTTGATGACATCTTCGGATCATCAAGTACCTAGATGGGGAAGATAAGAACATGTCACTCACAAATGCAAATCACCATTCCCTCAAACATAAAAGGAGTGCATTTCTGCAACAGCATATAACACATGCCATGACAGTAAAGTAGAAAGAAATAATCAAAAAGAGTTACGTACATATAAGCTTGCTAGCCGATCAAATGTTCTTAGTGTTGCCACAAAGACAAGGCATGAATGTTTAACAGAATGGTCAGGAACACTACAACTCGTTGAGTCGGCAACACTAGTGGTCATGAGAAAGCTACATGGTAGCAACCAGATAATGACCATGAGTTCAAGACAACACATCGCCATTTGGACAGTATCAATTATCAATGAAGCAGGTCTGACCTGTCAACTACCGTTCCCACTTATTGTTCAGAATCGAACAGCTACAGGTTGACATAATTAATTGACATAGATGATTACAGGCGTTTGAAGATGTAAGTTAAATTGGCCACTAGATCTTACCAAGGGAAAAAATACTAGTAAATATGGGCTACCATTGCAACAGTTGGAAAGATAGAATATTTACAGAGGCAGTCAACTTGGAGTGGATGACAAGAAAGAAAGAAAGAGTAACCAACCTTTGGTGAGGAACCAGAAATTGGCCTTCAAGAAGTGAATACGGTAGTGAATGCTGAAGAGCGACCTGAATCCAGAGCCATGGGGAGTGGCAGGCAGAGGAGAAACCTGTAGATCAGAGGAAGGGGTATCCACGCATCTGAGAGTAGGGGGGAATGGGAATGGAGGAAGAAGAAAGCAAATGTGGACGCATACCTGAGCGAGATCCAGACGCAGGAAGAAGAGAAAGCTTGCACTTTGGAGATTGCTTGCTTGGTGCAGGACTGCAGGTGAGGTAGGGGTGATAAGAAGACGACGATAGTGGTGGAGTGTGGCAGCAGCGGCGGCAGGAGGAGAGGAGTTATCAGGTGGGTAGGTGATGGGAGTGATGGAGAAGAAACCAACCTTATTACGCTTTCTTTTTTTTTTCCTCCCAAGGATTAGACTTGCACTGCAAAAACAATTCCAAGATTTGGGTTCCGTTCCTATGGATTCAATCACAAGGAACCAGTCACAGCGAAATCTGCGACGGAAGAATGGGTACGACGGCGGCGAGCTTGGTTTCCCTGAGATTGCTCGCCTCCGCTTGAGGCCGCCACCT
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| CDS seq | ATGTCATCAAACTCCACTCTGACAGATTCTCTTCATGAGAGAACAATTGTTTTTGGCCTGAAACTTTGGGTTGTAATTGGGATATCTGTTGGAGCATCCCTACTTGGTGTTCTTCTCATACTTATTGTATGCCTCACCTTACAAACTTGGATCAAACGGTCACGTAGGACATTCAAGGAAATTCCAATTACCCAAATACCTTCTGCATCCAAAGATATCAAGGAAGTGAGGGCAGTGGACGAATTTTTGCCCAATGATTTCGTTGTACATGATGGGCTTCTACTCGCCATTCAGAATGAACCTGTTGAACCAGTGGATAAAGATGTGAATCAGTTTGCTCAAGAGGACAAGACGATACAAGGAGAAGAAAACAGTCCTGTTCCTCTTCATTACGTGGACAACTATGATGTAATTCAATCTGTTTCCACATGTGAACAGTCTTCCTCGCATGCTCCCGTCGACTCTGTTCTGTTGCCAGGCTTACCTGAGTTCTCTTACCTTGGCTGGGGTCATTGGTTCACTCTCAGGGATCTGGAACTTGCAACCAACTGTTTTTCAAAGGATAATGTAATTGGTGAGGGTGGATATGGTGTTGTCTACCGTGGCAGATTATCAAATGGCACCCCAGTGGCTGTCAAAAAAATCCTTAACAATCTAGGACAAGCTGAGAGAGAATTCAGAGTGGAAGTTGAAGCAATTGGTCATGTCCGACACAAGAATTTGGTTCGCCTTTTGGGGTACTGTGTTGAAGGCACTCAAAGGATGCTTGTGTATGAGTATGTCAACAATGGGAATCTCGAAAGTTGGTTACATGGAGAGTTATCCCAATATAGTTCTCTCACTTGGCTAGCGCGCATGAAAATTCTTTTGGGTACTGCAAAGGCCCTTGCTTACTTACATGAGGCAATTGAACCAAAAGTTGTGCATCGTGATATCAAGGCCAGTAATATATTGATTGATGATGAGTTTAACGCCAAAATATCTGACTTTGGTTTGGCCAAGATGCTAGGTGCTGGTAAAAGTCATATTGCTACTCGAGTTATGGGTACTTTTGGCTATGTCGCGCCTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGATGTCTACAGTTTTGGGGTGGTTCTGCTGGAAGCTATTACAGGTAGAGATCCCATTGACTATGATCGCCCTACAGATGAGGTAAACCTAGTTGACTGGCTTAAAATGATGGTTGCCCACAGACGATCTGAAGAAGTTGTTGATCCAAACCTGGAGAGAAGACCATCGACAAAGGAGCTCAAACGTGCCCTTTTGACAGCTCTGAGGTGCATCGATTTGAATGCTGAGAAGAGACCAAGGATGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAGGAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCATTAAGAGGCAAGAGCAGCAGCGGCAAGAGTGATGCCCCTGAAAATGAGATGAGGCCACCTCGGTATAAGAATCGATCATTTCCCCCCAAGTGA
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| Protein seq | MSSNSTLTDSLHERTIVFGLKLWVVIGISVGASLLGVLLILIVCLTLQTWIKRSRRTFKEIPITQIPSASKDIKEVRAVDEFLPNDFVVHDGLLLAIQNEPVEPVDKDVNQFAQEDKTIQGEENSPVPLHYVDNYDVIQSVSTCEQSSSHAPVDSVLLPGLPEFSYLGWGHWFTLRDLELATNCFSKDNVIGEGGYGVVYRGRLSNGTPVAVKKILNNLGQAEREFRVEVEAIGHVRHKNLVRLLGYCVEGTQRMLVYEYVNNGNLESWLHGELSQYSSLTWLARMKILLGTAKALAYLHEAIEPKVVHRDIKASNILIDDEFNAKISDFGLAKMLGAGKSHIATRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPIDYDRPTDEVNLVDWLKMMVAHRRSEEVVDPNLERRPSTKELKRALLTALRCIDLNAEKRPRMDQVVRMLDSNEPIPQEERRQRQNHISNNSETEPLRGKSSSGKSDAPENEMRPPRYKNRSFPPK |
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| Function | Probable receptor-like protein kinase At2g42960 [UniProtKB/Swiss-Prot:Q9SJG2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0108800 | Os11t0108800-00 | Chr11 | 397403 | 401779 | - | irgsp1_rep | ||
| CDS seq | ATGTCATCAAACTCCACTCTGACAGATTCTCTTCATGAGAGAACAATTGTTTTTGGCCTGAAACTTTGGGTTGTAATTGGGATATCTGTTGGAGCATCCCTACTTGGTGTTCTTCTCATACTTATTGTATGCCTCACCTTACAAACTTGGATCAAACGGTCACGTAGGACATTCAAGGAAATTCCAATTACCCAAATACCTTCTGCATCCAAAGATATCAAGGAAGTGAGGGCAGTGGACGAATTTTTGCCCAATGATTTCGTTGTACATGATGGGCTTCTACTCGCCATTCAGAATGAACCTGTTGAACCAGTGGATAAAGATGTGAATCAGTTTGCTCAAGAGGACAAGACGATACAAGGAGAAGAAAACAGTCCTGTTCCTCTTCATTACGTGGACAACTATGATGTAATTCAATCTGTTTCCACATGTGAACAGTCTTCCTCGCATGCTCCCGTCGACTCTGTTCTGTTGCCAGGCTTACCTGAGTTCTCTTACCTTGGCTGGGGTCATTGGTTCACTCTCAGGGATCTGGAACTTGCAACCAACTGTTTTTCAAAGGATAATGTAATTGGTGAGGGTGGATATGGTGTTGTCTACCGTGGCAGATTATCAAATGGCACCCCAGTGGCTGTCAAAAAAATCCTTAACAATCTAGGACAAGCTGAGAGAGAATTCAGAGTGGAAGTTGAAGCAATTGGTCATGTCCGACACAAGAATTTGGTTCGCCTTTTGGGGTACTGTGTTGAAGGCACTCAAAGGATGCTTGTGTATGAGTATGTCAACAATGGGAATCTCGAAAGTTGGTTACATGGAGAGTTATCCCAATATAGTTCTCTCACTTGGCTAGCGCGCATGAAAATTCTTTTGGGTACTGCAAAGGCCCTTGCTTACTTACATGAGGCAATTGAACCAAAAGTTGTGCATCGTGATATCAAGGCCAGTAATATATTGATTGATGATGAGTTTAACGCCAAAATATCTGACTTTGGTTTGGCCAAGATGCTAGGTGCTGGTAAAAGTCATATTGCTACTCGAGTTATGGGTACTTTTGGCTATGTCGCGCCTGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGATGTCTACAGTTTTGGGGTGGTTCTGCTGGAAGCTATTACAGGTAGAGATCCCATTGACTATGATCGCCCTACAGATGAGGTAAACCTAGTTGACTGGCTTAAAATGATGGTTGCCCACAGACGATCTGAAGAAGTTGTTGATCCAAACCTGGAGAGAAGACCATCGACAAAGGAGCTCAAACGTGCCCTTTTGACAGCTCTGAGGTGCATCGATTTGAATGCTGAGAAGAGACCAAGGATGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAGGAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAGACCGAGCCATTAAGAGGCAAGAGCAGCAGCGGCAAGAGTGATGCCCCTGAAAATGAGATGAGGCCACCTCGGTATAAGAATCGATCATTTCCCCCCAAGTGA
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| Protein seq | MSSNSTLTDSLHERTIVFGLKLWVVIGISVGASLLGVLLILIVCLTLQTWIKRSRRTFKEIPITQIPSASKDIKEVRAVDEFLPNDFVVHDGLLLAIQNEPVEPVDKDVNQFAQEDKTIQGEENSPVPLHYVDNYDVIQSVSTCEQSSSHAPVDSVLLPGLPEFSYLGWGHWFTLRDLELATNCFSKDNVIGEGGYGVVYRGRLSNGTPVAVKKILNNLGQAEREFRVEVEAIGHVRHKNLVRLLGYCVEGTQRMLVYEYVNNGNLESWLHGELSQYSSLTWLARMKILLGTAKALAYLHEAIEPKVVHRDIKASNILIDDEFNAKISDFGLAKMLGAGKSHIATRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPIDYDRPTDEVNLVDWLKMMVAHRRSEEVVDPNLERRPSTKELKRALLTALRCIDLNAEKRPRMDQVVRMLDSNEPIPQEERRQRQNHISNNSETEPLRGKSSSGKSDAPENEMRPPRYKNRSFPPK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0108800 | RBH | 0.350593 | 0.050381 | 3.953881 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01740 | RBH | 0.209218 | 0.064446 | 0.900080 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0108100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000610 | RBH | 0.073961 | 34.707134 | 20.711126 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000640 | RBH | 0.159364 | 9.554132 | 1.962885 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000620 | RBH | 0.161793 | 25.444447 | 17.181427 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000620 | RBH | 0.0 | 0.856843 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000620 | RBH | 1.288495 | 18.901426 | 32.477024 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0007800 | RBH | 7.4161405 | 6.0050445 | 6.1673355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000610 | RBH | 0.035184 | 1.311804 | 2.076789 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0008700 | RBH | 7.0437075 | 2.0801915 | 10.838152 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000490 | RBH | 0.037921 | 0.264925 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000630 | RBH | 0.205175 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000630 | RBH | 0.0 | 42.885612 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000640 | RBH | 0.494482 | 0.0 | 2.091489 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000650 | RBH | 0.242192 | 12.298848 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000630 | RBH | 0.030900 | 3.054033 | 6.395711 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000620 | RBH | 0.163879 | 24.996567 | 16.157648 |
