Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLiXu_11g0000640 OGI:11001480 | 16/16 LIU XU | Os125827RS1 | Gramene(+IsoSeq) Chr11:524236-529143
Gene Symbol -
DNA seq

ttaattatctcctggaaaagagctgctaaggacaaaactacaagtgagcttgataaatgacagattcacttcatcggtatgtcatacacaacactactctgttgcatgcgaattgtgaattgcatctcttatgctattagcaactgattaatcatttatttggaggcattgaattgcatgtaccatcatttttcatatttgttcatgatcaagaaacggcattctcattaacacagattgctgaggttgcatgtatcaatagaaatccacacctgccaaattcacctcagagaatggtctatctcctgcctgaagagctgataaatacagcactgaactcgaccactgagagattcagttcgttcatttgtcgcacacaacacaaactgaaagtcaatttttctttcatttgcctctttatactcttagagtatacagaaaatatgaaaaagttatttcattggtttcttcatgcactttctcacaccagcaaccataccagccactagcttctaaataatagcttttatgctctcatgtgcatccttcaactatctatcacacacaaactactgtacatgtatcacacaccagcactgtacatgtttcaagaaatacaaatatgtgtaactgcaatggccgctcccccagcctcccagggaacaaaaaaattgatcaagtcaagagaaataataaaagagaaacaaaacaattgaccaattcattatgtattgagagcatcgcaggtaactccataacttccactctagtatgcttttcacttttcacttggggggaaatgatcgattcttataccgaggtggcctcatctcattttcaggggcatcactcttgccgctgctgctcttgcctcttaatggctcggtctctgaattattagagatgtggttctgtcgttgtcttctttcctgcaaatcaattgacatgtgtttaattcatgaggcaatgacagaataaagccatgatttccttatggtagacattaataccatgttatgcaatgctctttatgtccgataatgctgataagacaggtatataggatacaatcaaataggattgctcatgttgtccatctgtcactaattttactgtgagatgaacattggatgtacttataacacaatatagcacgaatatgcatgatttccaggtaaatcactaatcgtactctttaggtaaaggaagagtttagagctacagcctttgcatctgatatgcacacagctatatgatatatatgtatgcacatttatttttgaaacgaatcaaacctcttgaggaatgggttcattagagtccaacatccggaccacctggtccatccttggtctcttctcagcattcaaatcgatgcacctcagagctgtcaaaagggcacgtttgagctcctttgtcgatggtcttctctccaggtttggatcaacaacttcttcagatcgtctgtgggcaaccatcattttaagccagtcaactaggtttacctacaaaagatcagtagtgtgttacagtacttgtcaaatcataagttcatagcttcttgattgcttaacaagtgattgtagttgcatgcttttatgtaataacttggtactgaacaatacagaaaaaaaatcaacaagtattacctcatctgtagggcgatcatagtcaatgggatctctacctgtaatagcttccagcagaaccaccccaaaactgtagacatcactcttttcattcaaaagtccactgttagcatactcaggcgcgacatagctgcaaaataataacacaatgttgagtaccattagtgattagcaccaacagaatttttctgaaattacagtggccaagatttgaacgtaatacaaagagaacatgcctcaatttattatacaaaggcatgaaaaacttacccaaaagtacccataactcgagtagcaatatgacttttaccagcacctagcatcttggccaaaccaaagtcagatattttggcgttaaactcatcatcaatcaatatattactggccttgatatcacgatgcacaacttttggttcaattgcctcatgtaagtaagcaaggctgcaaatgtggtggttcgtacaaaattagtatttaccaagcagtaagatgatacaatctatacttgttttatattcatgatagtatagacaacgactacttgtgaacagtactgactagtaagcctttaatcacaaagctgtcaagattgtaacatgcacaacagtttttaatagagcagctatcaagactggatgtgcttgtgtgaatcaatcagaaggcgacatttttagttctaaggcatttaatggaatagatatagatccaatcagttcacagtttgcaccacgcaaaatcacaaatacaatgttgacagcaaacaattgatctagaatggacatttgaatccacaagaagcaatagattagactcagtgatggagttactcacgcctttgcagtacccaaaagaattttcatgcgcgctagccaagtgagagaactatattgggataactctccatgtaaccaactttcgagattcccattgttgacatactcatacacaagcatcctgattatcaacgcacaacaaacaatttcagttgagacacaacaggtcatagtctaagcaatgaatcctaataatacccatacctttgagtgccttcaacacagtaccccaaaaggcgaaccaaattcttgtgtcggacatgaccaattgcttcaacttccactctgaattctctctcagcttgtcctctgcccaaggcaagtggtcatagcttaagtaaaaggaaggacaacaaactaaccaatgcactgccactgcatcaccaaagaattgttataagaaaaaacgaaaaatactcacagattgttaaggatttttttgacagccactggggtgccatttgataatctgccacggtagacaacaccatatccaccctcaccaattacattatcctttgaaaaacagttggttgcaagttccagatccctgagagtgaaccaatgaccccagccaaggtaagagaactcaggtaagcctggcaacagaacagagtcgacgggagcatgcgaggaagactgttcacatgtggaaacagattgaattacatcatagttgtccacgtaatgaagaggaacaggactgttttcttctccttgtatcgtcttgtcctcttgagcaaactgattcacatctttatccactggttcaacaggttcattctgaatggcgagtagaagcccatcatgtacaacgaaatcattgggcaaaaattcgtccactgccctcacttccttgatatctttggatgcagaaggtatttgggtaattggaatttccttgaatgtcctacgtgaccgtttgatccaagtttgtaaggtgaggcatacaataagtatgagaagaacaccaagtagggatgctccaacagatatcccaattacaacccaaagtttcaggccaaaaacaattgttctctcatgaagagaatctgtcagagtggagtttgatgacatcttcggatcatcaagtacctagatggggaagataagaacatgtcactcacaaatgcaaatcaccattccctcaaacataaaaggagtgcatttctgcaacagcatataacacatgccatgacagtaaagtagaaagaaataatcaaaaagagttacgtacatataagcttgctagccgatcaaatgttcttagtgttgccacaaagacaaggcatgaatgtttaacagaatggtcaggaacactacaactcgttgagtcggcaacactagtggtcatgagaaagctacatggtagcaaccagataatgaccatgagttcaagacaacacatcgccatttggacagtatcaattatcaatgaagcaggtctgacctgtcaactaccgttcccacttattgttcagaatcgaacagctacaggttgacataattaattgacatagatgattacaggcgtttgaagatgtaagttaaattggccactagatcttaccaagggaaaaaatactagtaaatatgggctaccattgcaacagttggaaagatagaatatttacagaggcagtcaacttggagtggatgacaagaaagaaagaaagagtaaccaacctttggtgaggaaccagaaattggccttcaagaagtgaatacggtagtgaatgctgaagagcgacctgaatccagagccatggggagtggcaggcagaggagaaacctgtagatcagaggaaggggtatccacgcatctgagagtaggggggaatgggaatggaggaagaagaaagcaaatgtggacgcatacctgagcgagatccagacgcaggaagaagagaaagcttgcactttggagattgcttgcttggtgcaggactgcaggtgaggtaggggtgataagaagacgacgatagtggtggagtgtggcagcagcggcggcaggaggagaggagttatcaggtgggtaggtgatgggagtgatggagaagaaaccaaccttattacgctttcttttttttttcctcccaaggattagacttgcactgcaaaaacaattccaagatttgggttccgttcctatggattcaatcacaaggaaccagtcacagcgaaatctgcgacggaagaatgggtacgacggcggcgagcttggtttccctgagattgctcgcctccgcttgaggccgccacctgctcgaggccccccgctgcagcttctgcctgctcccactgccgactggcggaggctgcggcggcgcccgttggctggagtctctgccgacgcggccggcttccctgctggacctcgcgcagtcgcgctgtgtgtgttttctttctttttcttttttttcttt

More
CDS seq

atgtcatcaaactccactctgacagattctcttcatgagagaacaattgtttttggcctgaaactttgggttgtaattgggatatctgttggagcatccctacttggtgttcttctcatacttattgtatgcctcaccttacaaacttggatcaaacggtcacgtaggacattcaaggaaattccaattacccaaataccttctgcatccaaagatatcaaggaagtgagggcagtggacgaatttttgcccaatgatttcgttgtacatgatgggcttctactcgccattcagaatgaacctgttgaaccagtggataaagatgtgaatcagtttgctcaagaggacaagacgatacaaggagaagaaaacagtcctgttcctcttcattacgtggacaactatgatgtaattcaatctgtttccacatgtgaacagtcttcctcgcatgctcccgtcgactctgttctgttgccaggcttacctgagttctcttaccttggctggggtcattggttcactctcagggatctggaacttgcaaccaactgtttttcaaaggataatgtaattggtgagggtggatatggtgttgtctaccgtggcagattatcaaatggcaccccagtggctgtcaaaaaaatccttaacaatctaggacaagctgagagagaattcagagtggaagttgaagcaattggtcatgtccgacacaagaatttggttcgccttttggggtactgtgttgaaggcactcaaaggatgcttgtgtatgagtatgtcaacaatgggaatctcgaaagttggttacatggagagttatcccaatatagttctctcacttggctagcgcgcatgaaaattcttttgggtactgcaaaggcccttgcttacttacatgaggcaattgaaccaaaagttgtgcatcgtgatatcaaggccagtaatatattgattgatgatgagtttaacgccaaaatatctgactttggtttggccaagatgctaggtgctggtaaaagtcatattgctactcgagttatgggtacttttggctatgtcgcgcctgagtatgctaacagtggacttttgaatgaaaagagtgatgtctacagttttggggtggttctgctggaagctattacaggtagagatcccattgactatgatcgccctacagatgaggtaatacttgttgattttttttctgtattgttcagtaccaagttattacataaaagcatgcaactacaatcacttgttaagcaatcaagaagctatgaacttatgatttga

More
Protein seq

MSSNSTLTDSLHERTIVFGLKLWVVIGISVGASLLGVLLILIVCLTLQTWIKRSRRTFKEIPITQIPSASKDIKEVRAVDEFLPNDFVVHDGLLLAIQNEPVEPVDKDVNQFAQEDKTIQGEENSPVPLHYVDNYDVIQSVSTCEQSSSHAPVDSVLLPGLPEFSYLGWGHWFTLRDLELATNCFSKDNVIGEGGYGVVYRGRLSNGTPVAVKKILNNLGQAEREFRVEVEAIGHVRHKNLVRLLGYCVEGTQRMLVYEYVNNGNLESWLHGELSQYSSLTWLARMKILLGTAKALAYLHEAIEPKVVHRDIKASNILIDDEFNAKISDFGLAKMLGAGKSHIATRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPIDYDRPTDEVILVDFFSVLFSTKLLHKSMQLQSLVKQSRSYELMI

Function Probable receptor-like protein kinase At2g42960 [UniProtKB/Swiss-Prot:Q9SJG2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLiXu_11g0000640 OsLiXu_11g0000640.02 Chr11 524236 529139 - NAM
CDS seq

atgtcatcaaactccactctgacagattctcttcatgagagaacaattgtttttggcctgaaactttgggttgtaattgggatatctgttggagcatccctacttggtgttcttctcatacttattgtatgcctcaccttacaaacttggatcaaacggtcacgtaggacattcaaggaaattccaattacccaaataccttctgcatccaaagatatcaaggaagtgagggcagtggacgaatttttgcccaatgatttcgttgtacatgatgggcttctactcgccattcagaatgaacctgttgaaccagtggataaagatgtgaatcagtttgctcaagaggacaagacgatacaaggagaagaaaacagtcctgttcctcttcattacgtggacaactatgatgtaattcaatctgtttccacatgtgaacagtcttcctcgcatgctcccgtcgactctgttctgttgccaggcttacctgagttctcttaccttggctggggtcattggttcactctcagggatctggaacttgcaaccaactgtttttcaaaggataatgtaattggtgagggtggatatggtgttgtctaccgtggcagattatcaaatggcaccccagtggctgtcaaaaaaatccttaacaatctaggacaagctgagagagaattcagagtggaagttgaagcaattggtcatgtccgacacaagaatttggttcgccttttggggtactgtgttgaaggcactcaaagccttgcttacttacatgaggcaattgaaccaaaagttgtgcatcgtgatatcaaggccagtaatatattgattgatgatgagtttaacgccaaaatatctgactttggtttggccaagatgctaggtgctggtaaaagtcatattgctactcgagttatgggtacttttggctatgtcgcgcctgagtatgctaacagtggacttttgaatgaaaagagtgatgtctacagttttggggtggttctgctggaagctattacaggtagagatcccattgactatgatcgccctacagatgagagaccaaggatggaccaggtggtccggatgttggactctaatgaacccattcctcaagaggaaagaagacaacgacagaaccacatctctaataattcagagaccgagccattaagaggcaagagcagcagcggcaagagtgatgcccctgaaaatgagatgaggccacctcgctcttttccaggagataattaa

More
Protein seq

MSSNSTLTDSLHERTIVFGLKLWVVIGISVGASLLGVLLILIVCLTLQTWIKRSRRTFKEIPITQIPSASKDIKEVRAVDEFLPNDFVVHDGLLLAIQNEPVEPVDKDVNQFAQEDKTIQGEENSPVPLHYVDNYDVIQSVSTCEQSSSHAPVDSVLLPGLPEFSYLGWGHWFTLRDLELATNCFSKDNVIGEGGYGVVYRGRLSNGTPVAVKKILNNLGQAEREFRVEVEAIGHVRHKNLVRLLGYCVEGTQSLAYLHEAIEPKVVHRDIKASNILIDDEFNAKISDFGLAKMLGAGKSHIATRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPIDYDRPTDERPRMDQVVRMLDSNEPIPQEERRQRQNHISNNSETEPLRGKSSSGKSDAPENEMRPPRSFPGDN

More
Gene Transcript Chromosome Start End Strand Source
OsLiXu_11g0000640 OsLiXu_11g0000640.03 Chr11 524236 528863 - NAM
CDS seq

atgtcatcaaactccactctgacagattctcttcatgagagaacaattgtttttggcctgaaactttgggttgtaattgggatatctgttggagcatccctacttggtgttcttctcatacttattgtatgcctcaccttacaaacttggatcaaacggtcacgtaggacattcaaggaaattccaattacccaaataccttctgcatccaaagatatcaaggaagtgagggcagtggacgaatttttgcccaatgatttcgttgtacatgatgggcttctactcgccattcagaatgaacctgttgaaccagtggataaagatgtgaatcagtttgctcaagaggacaagacgatacaaggagaagaaaacagtcctgttcctcttcattacgtggacaactatgatgtaattcaatctgtttccacatgtgaacagtcttcctcgcatgctcccgtcgactctgttctgttgccaggcttacctgagttctcttaccttggctggggtcattggttcactctcagggatctggaacttgcaaccaactgtttttcaaaggataatgtaattggtgagggtggatatggtgttgtctaccgtggcagattatcaaatggcaccccagtggctgtcaaaaaaatccttaacaatctaggacaagctgagagagaattcagagtggaagttgaagcaattggtcatgtccgacacaagaatttggttcgccttttggggtactgtgttgaaggcactcaaagccttgcttacttacatgaggcaattgaaccaaaagttgtgcatcgtgatatcaaggccagtaatatattgattgatgatgagtttaacgccaaaatatctgactttggtttggccaagatgctaggtgctggtaaaagtcatattgctactcgagttatgggtacttttggctatgtcgcgcctgagtatgctaacagtggacttttgaatgaaaagagtgatgtctacagttttggggtggttctgctggaagctattacaggtagagatcccattgactatgatcgccctacagatgagagaccaaggatggaccaggtggtccggatgttggactctaatgaacccattcctcaagaggaaagaagacaacgacagaaccacatctctaataattcagagaccgagccattaagaggcaagagcagcagcggcaagagtgatgcccctgaaaatgagatgaggccacctcgctcttttccaggagataattaa

More
Protein seq

MSSNSTLTDSLHERTIVFGLKLWVVIGISVGASLLGVLLILIVCLTLQTWIKRSRRTFKEIPITQIPSASKDIKEVRAVDEFLPNDFVVHDGLLLAIQNEPVEPVDKDVNQFAQEDKTIQGEENSPVPLHYVDNYDVIQSVSTCEQSSSHAPVDSVLLPGLPEFSYLGWGHWFTLRDLELATNCFSKDNVIGEGGYGVVYRGRLSNGTPVAVKKILNNLGQAEREFRVEVEAIGHVRHKNLVRLLGYCVEGTQSLAYLHEAIEPKVVHRDIKASNILIDDEFNAKISDFGLAKMLGAGKSHIATRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPIDYDRPTDERPRMDQVVRMLDSNEPIPQEERRQRQNHISNNSETEPLRGKSSSGKSDAPENEMRPPRSFPGDN

More
Gene Transcript Chromosome Start End Strand Source
OsLiXu_11g0000640 OsLiXu_11g0000640.01 Chr11 524623 529143 - NAM
CDS seq

atgtcatcaaactccactctgacagattctcttcatgagagaacaattgtttttggcctgaaactttgggttgtaattgggatatctgttggagcatccctacttggtgttcttctcatacttattgtatgcctcaccttacaaacttggatcaaacggtcacgtaggacattcaaggaaattccaattacccaaataccttctgcatccaaagatatcaaggaagtgagggcagtggacgaatttttgcccaatgatttcgttgtacatgatgggcttctactcgccattcagaatgaacctgttgaaccagtggataaagatgtgaatcagtttgctcaagaggacaagacgatacaaggagaagaaaacagtcctgttcctcttcattacgtggacaactatgatgtaattcaatctgtttccacatgtgaacagtcttcctcgcatgctcccgtcgactctgttctgttgccaggcttacctgagttctcttaccttggctggggtcattggttcactctcagggatctggaacttgcaaccaactgtttttcaaaggataatgtaattggtgagggtggatatggtgttgtctaccgtggcagattatcaaatggcaccccagtggctgtcaaaaaaatccttaacaatctaggacaagctgagagagaattcagagtggaagttgaagcaattggtcatgtccgacacaagaatttggttcgccttttggggtactgtgttgaaggcactcaaaggatgcttgtgtatgagtatgtcaacaatgggaatctcgaaagttggttacatggagagttatcccaatatagttctctcacttggctagcgcgcatgaaaattcttttgggtactgcaaaggcccttgcttacttacatgaggcaattgaaccaaaagttgtgcatcgtgatatcaaggccagtaatatattgattgatgatgagtttaacgccaaaatatctgactttggtttggccaagatgctaggtgctggtaaaagtcatattgctactcgagttatgggtacttttggctatgtcgcgcctgagtatgctaacagtggacttttgaatgaaaagagtgatgtctacagttttggggtggttctgctggaagctattacaggtagagatcccattgactatgatcgccctacagatgaggtaatacttgttgattttttttctgtattgttcagtaccaagttattacataaaagcatgcaactacaatcacttgttaagcaatcaagaagctatgaacttatgatttga

More
Protein seq

MSSNSTLTDSLHERTIVFGLKLWVVIGISVGASLLGVLLILIVCLTLQTWIKRSRRTFKEIPITQIPSASKDIKEVRAVDEFLPNDFVVHDGLLLAIQNEPVEPVDKDVNQFAQEDKTIQGEENSPVPLHYVDNYDVIQSVSTCEQSSSHAPVDSVLLPGLPEFSYLGWGHWFTLRDLELATNCFSKDNVIGEGGYGVVYRGRLSNGTPVAVKKILNNLGQAEREFRVEVEAIGHVRHKNLVRLLGYCVEGTQRMLVYEYVNNGNLESWLHGELSQYSSLTWLARMKILLGTAKALAYLHEAIEPKVVHRDIKASNILIDDEFNAKISDFGLAKMLGAGKSHIATRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPIDYDRPTDEVILVDFFSVLFSTKLLHKSMQLQSLVKQSRSYELMI

More
Gene Transcript Chromosome Start End Strand Source
OsLiXu_11g0000640 OsLiXu_11g0000640.04 Chr11 524744 528659 - IsoSeq
CDS seq

ccaagcaagcaatctccaaagtgcaagctttctcttcttcctgcgtctggatctcgctcaggtttctcctctgcctgccactccccatggctctggattcaggtcgctcttcagcattcactaccgtattcacttcttgaaggccaatttctggttcctcaccaaaggtacttgatgatccgaagatgtcatcaaactcca

More
Protein seq

PSKQSPKCKLSLLPASGSRSGFSSACHSPWLWIQVALQHSLPYSLLEGQFLVPHQRYLMIRRCHQTP

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr11 527812 528404 - OsLiXu_11g0000640.03 OsLiXu_11g0000640.02,OsLiXu_11g0000640.04,OsLiXu_11g0000640.01,OsLiXu_11g0000640.03 All
A3 Chr11 525590 525885 - OsLiXu_11g0000640.04 OsLiXu_11g0000640.02,OsLiXu_11g0000640.03,OsLiXu_11g0000640.04 All
SE Chr11 526325 526922 - OsLiXu_11g0000640.01,OsLiXu_11g0000640.04 OsLiXu_11g0000640.02,OsLiXu_11g0000640.04,OsLiXu_11g0000640.03,OsLiXu_11g0000640.01 All

Expression

Leaf Root Panicle
FPKM 0.494482 0.0 2.091489

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0108800 RBH 0.350593 0.050381 3.953881
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g01740 SBH 0.209218 0.064446 0.900080
Nipponbare | IRGSP 1.0 | RAP-db Os11g0108800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0000610 SBH 0.073961 34.707134 20.711126
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0000640 SBH 0.159364 9.554132 1.962885
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0000620 RBH 0.161793 25.444447 17.181427
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0000620 SBH 0.0 0.856843 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0000620 SBH 1.288495 18.901426 32.477024
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0007800 RBH 7.4161405 6.0050445 6.1673355
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0000610 SBH 0.035184 1.311804 2.076789
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0008700 RBH 7.0437075 2.0801915 10.838152
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0000490 RBH 0.037921 0.264925 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0000630 SBH 0.205175 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0000630 RBH 0.0 42.885612 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0000590 RBH 0.426746 0.0 1.834819
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0000650 SBH 0.242192 12.298848 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G000630 RBH 0.030900 3.054033 6.395711
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0000620 SBH 0.163879 24.996567 16.157648
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.