Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_11g0000620 OGI:11001480 | 16/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr11:498253-507134
Gene Symbol RLCK358, OsRLCK358
DNA seq

gtcgcacacaacacaaactgaaagtcaatttttctttcatttgcctctttatactcttagagtatacagaaaatatgaaaaagttatttcattggtttcttcatgcactttctcacaccagcaaccataccagccactagcttctaaataatagcttttatgctctcatgtgcatccttcaactatctatcacacacaaactactgtacatgtatcacacaccagcactgtacatgtttcaagaaatacaaatatgtgtaactgcaatggccgctcccccagcctcccagggaacaaaaaaattgatcaagtcaagagaaataataaaagagaaacaaaacaattgaccaattcattatgtattgagagcatcgcaggtaactccataacttccactctagtatgcttttcacttttcacttggggggaaatgatcgattcttataccgaggtggcctcatctcattttcaggggcatcactcttgccgctgctgctcttgcctcttaatggctcggtctctgaattattagagatgtggttctgccgttgtcttctttcctgcaaatcaattgacatgtgtttaattcatgaggcaatgacagaataaagccatgatttccttatggtagacattaataccatgttatgcaatgctctttatgtccgataatgctgataagacaggtatataggatacaatcaaataggattgctcatgttgtccatctgtcactaattttactgtgagatgaacattggatgtacttataacacaatatagcacgaatatgcatgatttccaggtaaatcactaatcgtactctttaggtaaaggaagagtttagagctacagcctttgcatctgatatgcacacagctatatgatatatatgtatgcacatttatttttgaaacgaatcaaacctcttgaggaatgggttcattagagtccaacatccggaccacctggtccatccttggtctcttctcagcattcaaatcgatgcacctcagagctgtcaaaagggcacgtttgagctcctttgtcgatggtcttctctccaggtttggatcaacaacttcttcagatcgtctgttggcaaccatcattttaagccagtcaattaggtttacctacaaaagatcagtagtgtgttacagtacttgtcaaatcataagttcatagcttcttgattgcttaacaagtgattgtagttgcatgcttttatgtaataacttggtactgaacaatacagaaaaaaaatcaacaagtattacctcatctgtagggcgatcatagtcaatgggatctctacctgtaatagcttccagcagaaccaccccaaaactgtagacatcactcttttcattcaaaagtccactgttagcatactcaggcgcgacatagctgcaaaataataacacaatgttgagtaccattagtgattagcaccaacagaatttttctgaaattacagtggccaagatttgaacgaaatacaaagagaacatgcctcaatttattatacaaaggcatgaaaaacttacccaaaagtacccataactcgagtagcaatatgacttttaccagcacctagcatcttggccaaaccaaagtcagatattttggcgttaaactcatcatcaatcaatatattactggccttgatatcacgatgcacaacttttggttcaattgcctcatgtaagtaagcaaggctgcaaatgtggtggttcgtacaaaattagtatttaccaagcagtaagatgatacaatctatacttgttttatattcatgatagtatagacaacgactacttgtgaacagtactgactagtaagcctttaatcacaaagctgtcaagattgtaacatgcacaacagtttttaatagagcagctatcaagactggatgtgcttgtgtgaatcaatcagaaggcgacatttttagttctaaggcatttaatggaatagatatagatccaatcagttcacagtttgcaccacgcaaaatcacaaatacaatgttgacagcaaacaattgatctagaatggacatttgaatccacaagaagcaatagattagactcagtgatggagttactcacgcctttgcagtacccaaaagaattttcatgcgcgctagccaagtgagagaactatattgggataactctccatgtaaccaactttcgagattcccattgttgacatactcatacacaagcatcctgattatcaacgcacaacaaacaatttcagttgagacacaacaggtcatagtctaagcaatgaatcctaataatacccatacctttgagtgccttcaacacagtaccccaaaaggcgaaccaaattcttgtgtcggacatgaccaattgcttcaacttccactctgaattctctctcagcttgtcctctgcccaaggcaagtggtcatagcttaagtaaaaggaaggacaacaaactaaccaatgcactgccactgcatcaccaaagaattgttataagaaaaaacgaaaaatactcacagattgttaaggaTttttttgacagccactggggtgccatttgataatctgccacggtagacaacaccatatccaccctcaccaattacattatcctttgaaaaacagttggttgcaagttccagatccctgagagtgaaccaatgaccccagccaaggtaagagaactcaggtaagcctggcaacagaacagagtcgacgggagcatgcgaggaagactgttcacatgtggaaacagattgaattacatcatagttgtccacgtaatgaagaggaacaggactgttttcttctccttgtatcgtcttgtcctcttgagcaaactgattcacatctttatccactggttcaacaggttcattctgaatggcgagtagaagcccatcatgtacaacgaaatcattgggcaaaaattcgtccactgccctcacttccttgatatctttggatgcagaaggtatttgggtaattggaatttccttgaatgtcctacgtgaccgtttgatccaagtttgtaaggtaaggcatacaataagtatgagaagaacaccaagtagggatgctccaacagatatcccaattacaacccaaagtttcaggccaaaaacaattgttctctcatgaagagaatctgtcagagtggagtttgatgacatcttcggatcatcaagtacctagatggggaagataagaacatgtcactcacaaatgcaaatcaccattccctcaaacataaaaggagtgcatttctgcaacagcatataacacatgccatgacagtaaagtagaaagaaataatcaaaaagagttacgtacatataagcttgctagccgatcaaatgttcttagtgttgccacaaagacaaggcatgaatgtttaacagaatggtcaggaacactacaactcgttgagtcggcaacactagtggtcatgagaaagctacatggtagcaaccagataatgaccatgagttcaagacaacacatcgccatttggacagtatcaattatcaatgaagcaggtctgacctgtcaactaccgttcccacttattgttcagaatcgaacagctacaggttgacataattaattgacatagatgattacaggcgtttgaagatgtaagttaaattggccactagatcttaccaagggaaaaaatactagtaaatatgggctaccattgcaacagttggaaagatagaatatttacagaggcagtcaacttggagtggatgacaagaaagaaagaaagagtaaccaacctttggtgaggaaccagaaattggccttcaagaagtgaatacggtagtgaatgctgaagagcgacctgaatccagagccatggggagtggcaggcagaggagaaacctgtagatcagaggaaggggtatccacgcatctgagagtaggggggaatgggaatggaggaagaagaaagcaaatgtggacgcatacctgagcgagatccagacgcaggaagaagagaaagcttgcactttggagattgcttgcttggtgcaggactgcaggtgaggaaggggtgataagaagacgacgatagtggtggagtgtggcagcagcggcggcaggaggagaggagttatcaggtgggtaggtgatgggagtgatggagaagaaaccaaccttattacgctttcTtttttttttttcctcccaaggattagacttgcactgcaaaaacaattccaagatttgggttccgttcctatggattcaatcacaaggaaccagtcacagcgaaatctgcgacggaagaatgggtacgacggcggcgagcttagtttccctgagattgctcgcctccgcttgaggccgccacctgctcgaggccccccgctgcagcttctgcctgctcccactgccgactggcggaggctgcggcggcgcccgttggctggagtctctgccgacgcggccggcttccctgctggacctcgcgcagtcgcgctgtgtgtgttttctttctttttctttttattattttgagatgacgtactcgcgctgtgagatttaggtggtgtttagatccagggacttaactttagtccctgtgtttagacactaatttagagtattaaatatagactacttacaaaattaattacataaataaaagctaattcacgagacaaattttttaaacctaatctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacctaataaaaaaattcgtaaggctttcgtgaggTttttttcgtccgtcggcggtttcctgccaaaatacgttttaatccgcttaatagtcggtcggaaattttccaatctactccaaaaccttgcttaatatatgatatgtatcagtcatgtatccatcaatcacaagtagtagcttgcccgcttggttggtggagaaaattttcaacctgcccaccagggttcgattcccatcatctctcctttttatacacggctatatagaataagtctacgatgcctcccatatctcaaatcattgctcggaataagtctacttggcctcccacagctcaaatcctactcagaataagtctactttccctcccacttttaaatttgaaaattaaacataattatatttttcttttcatcatctgcaaaacacgacgacatattagagtccgcgccatctatttgcacctctttcttcaatagatagtgataaatcttataatgaaccagattttaatttgaaaattaaacataattatttttttcttttcatcatctacaaaacatgacatattagagtccgcactatctatcgtccacacatgagccgtgaaaatgattcgtctccacgcaagtccgtgttcgattttagaaattatatcaagcgcttaccatgaatccgatggctaaaaaatcagaagtttttgcacctctttcttcaaaagatatttagtgattctgaaatcttataatgaaccattttttaatttgaaaattaaacataTtttttttcttttcgtcatctgcaaaacacgacatattagagtccgcaccatctatcttccacgcatgagccgtgaaaacgattcatgtccacgcaagtccatgttcgattttagaaataattatattaggcgcttgccatgcaagagttgagagagagtgcatgttatgaaaatatgagtatatcaatatgcaatagtccgtagcgaagcacgggcattttgctagttaatctataattagagaatgtttactgtagcatcacataggctaatcatggattaattaggctcattagattcgtctcgcaaattagtccaagattatggatgggttttattaatagtctacgtttaatatttataattaattttcaaacatccgatatgatagggacttaaaagttttagtcccatctaaacagggcctagtttcgcctgatttataaggagcgagcccaaacggattaataacgtgttttcgagtgatcgactaatttattaacaactaccgatagtAaaatgatagcggcggagcaaaggtgaccgcttgatctgaccaagaactccgccactttgtttttattgggctctaatgcaaactaataaaggaaaacttaatactatattcctaatttataaggacaatagtattaattttttctttctagtttgcactagagcccaatAaaaaatatgtggctttacatatatgccttgtatttatgtctaacatataccaatatgcatgctaggatggagaagaaaagagagaaggatttgagaaagtgtattttcatccctcgtttcttgcatatcacttaaatagccattaaaaattttataaaattgaccagatagattaatatgaaaaatatcactccacaaacatgcaagcaaggtcaaattcaaattctacaatgctaacaaatataaccgtgaatatatgttaactattttcaatttaatatattctttttgttgtaatttgtagaagttaaatttagcatacacatataaaagttcaatttaatttgttcttattgatcttcgttcatttctttcaaaatccgttcgagcctgctcaggatgtagttgttgattgccgggcattgtattccttgccttttaaccgatccttgcaggtgattctggagtttggtcacattgaaccccttaactctcttgtggcacgctaagcagcggctgccatcttttccaagcctctccccaagctcccagaccctgcttacttggtgacctctaacctttcccccaatttgtggcctgcaaattcagtgtttacttgtttataaatcgatcataagtgacaatgagaacactacactaattaattagtattaaacaatcaattgttgtgtgcgtgcagtactagtatattgcaataggcagaggagcatgttagttaattcaatgcaacaaattaagcttaattacctgtatgccgggaaataaagcttcaaatagtcatggatcgcatggcaggtgttctccatatgggtcgtagcttcatcttctcccctgcaacaacacagatcaattatcagcacaacacacacgtaatgcaattatattaattattatatatggaagattattaacaactgaaaagatgagtgctagtagccaagtgacacttacaatggagtatctctctttgcattaacccaatcccggatttctttcaaaacaccaccgttgacaaaggcacttccggtatctcctgaataaatggactcaattttgtcatgataatagcgcattgctgcagcagtattgccagaacgcatcagccttagagcacccacaatagtaaagtaaggtgctatttataaaacatgtacatctcagcaatagactagattaatagtaaaccatcttaatagtatatctacatgggtatctatatctctcatgcattgtctcgtttttctctatagactatctctaagttagtagatagttttgctctctctctctcttcatttaatatcttccatgtaagaaaatatgctgatatagatctcttgtagagagtctatagataaccattgtgggtgccgttaggtactcttctgccacgagcaaaataacgatctcgggatgagcaacataaatgtcttggggtggcgcgtcaggtacagggccattgatggcttcaccattacggaccatgcgcgtcagccgccgcagagctccctcccaacgatgttgttccaacaaattatccaaactcagcctgcaccatgtagtagaaaccaagtggttatatataattttgtggtgtgagctggtgcaacgtttagttgactagctagaatgtcaaatatatgaatgaatctgcttgcatgcaagtagtctcacttgtcatcctcatcttgatgtggctcaactggattttgctgatctgcagcggcttctggttgggctttcaccagttgctctaattcatcaagggcttcttgttctatcagctctgcaaccgcagcgtctatctcctgatgcacttgtatccctccgccaggcaattccaagatctcaggttgtttctcttctattatcagcctgcaaataattaagtaaaagagcatactgatgcattttcaacttgctatataatactccaattagtttagtgcttatatatgtcagtacgtgtgtgtgtatatatatataggtaaattaactggtgctacatggagtataggctccaagattcaaattgagtatatacacaatttgaatgagtatgaaatttttttaaatgtttagatatgaacattaacttctttactaacaagtttgaactgagtttgaattttttttttgttcgattttagttctaggtatataacatctaaacatataattcgttaggtatgtaataataaattgtgaaataaagttgagtttgagttgttttgttgttaggtatttgtatgaatcaaattcatatacctaggtatatactcacaatttgaaaatttttaaaaatttgagagaatttgtgtgttttatacctcgaaaCccggacaccatgaagtcccatatgggtatcctatataggtatatagtaagtacatacgtactaaacctgatatacataagcagttaactaattagagtcctgatatacataagcaattaactaattggagaactgcttattatgtatatcaggtttactacgtatgtacttactgtaggatctgctggcgttcatcgttctctcctgagtatgcctctttctcgttggcggtgaagccccacaaatgagacctataatcactcat

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CDS seq

atgtcatcaaactccactctgacagattctcttcatgagagaacaattgtttttggcctgaaactttgggttgtaattgggatatctgttggagcatccctacttggtgttcttctcatacttattgtatgccttaccttacaaacttggatcaaacggtcacgtaggacattcaaggaaattccaattacccaaataccttctgcatccaaagatatcaaggaagtgagggcagtggacgaatttttgcccaatgatttcgttgtacatgatgggcttctactcgccattcagaatgaacctgttgaaccagtggataaagatgtgaatcagtttgctcaagaggacaagacgatacaaggagaagaaaacagtcctgttcctcttcattacgtggacaactatgatgtaattcaatctgtttccacatgtgaacagtcttcctcgcatgctcccgtcgactctgttctgttgccaggcttacctgagttctcttaccttggctggggtcattggttcactctcagggatctggaacttgcaaccaactgtttttcaaaggataatgtaattggtgagggtggatatggtgttgtctaccgtggcagattatcaaatggcaccccagtggctgtcaaaaaaAtccttaacaatctaggacaagctgagagagaattcagagtggaagttgaagcaattggtcatgtccgacacaagaatttggttcgccttttggggtactgtgttgaaggcactcaaaggatgcttgtgtatgagtatgtcaacaatgggaatctcgaaagttggttacatggagagttatcccaatatagttctctcacttggctagcgcgcatgaaaattcttttgggtactgcaaaggcccttgcttacttacatgaggcaattgaaccaaaagttgtgcatcgtgatatcaaggccagtaatatattgattgatgatgagtttaacgccaaaatatctgactttggtttggccaagatgctaggtgctggtaaaagtcatattgctactcgagttatgggtacttttggctatgtcgcgcctgagtatgctaacagtggacttttgaatgaaaagagtgatgtctacagttttggggtggttctgctggaagctattacaggtagagatcccattgactatgatcgccctacagatgaggtaaacctaattgactggcttaaaatgatggttgccaacagacgatctgaagaagttgttgatccaaacctggagagaagaccatcgacaaaggagctcaaacgtgcccttttgacagctctgaggtgcatcgatttgaatgctgagaagagaccaaggatggaccaggtggtccggatgttggactctaatgaacccattcctcaagaggaaagaagacaacggcagaaccacatctctaataattcagagaccgagccattaagaggcaagagcagcagcggcaagagtgatgcccctgaaaatgagatgaggccacctcggtataagaatcgatcatttccccccaagtga

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Protein seq

MSSNSTLTDSLHERTIVFGLKLWVVIGISVGASLLGVLLILIVCLTLQTWIKRSRRTFKEIPITQIPSASKDIKEVRAVDEFLPNDFVVHDGLLLAIQNEPVEPVDKDVNQFAQEDKTIQGEENSPVPLHYVDNYDVIQSVSTCEQSSSHAPVDSVLLPGLPEFSYLGWGHWFTLRDLELATNCFSKDNVIGEGGYGVVYRGRLSNGTPVAVKKILNNLGQAEREFRVEVEAIGHVRHKNLVRLLGYCVEGTQRMLVYEYVNNGNLESWLHGELSQYSSLTWLARMKILLGTAKALAYLHEAIEPKVVHRDIKASNILIDDEFNAKISDFGLAKMLGAGKSHIATRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPIDYDRPTDEVNLIDWLKMMVANRRSEEVVDPNLERRPSTKELKRALLTALRCIDLNAEKRPRMDQVVRMLDSNEPIPQEERRQRQNHISNNSETEPLRGKSSSGKSDAPENEMRPPRYKNRSFPPK

Function Probable receptor-like protein kinase At2g42960 [UniProtKB/Swiss-Prot:Q9SJG2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_11g0000620 OsNaBo_11g0000620.01 Chr11 498253 507134 - NAM
CDS seq

atgtcatcaaactccactctgacagattctcttcatgagagaacaattgtttttggcctgaaactttgggttgtaattgggatatctgttggagcatccctacttggtgttcttctcatacttattgtatgccttaccttacaaacttggatcaaacggtcacgtaggacattcaaggaaattccaattacccaaataccttctgcatccaaagatatcaaggaagtgagggcagtggacgaatttttgcccaatgatttcgttgtacatgatgggcttctactcgccattcagaatgaacctgttgaaccagtggataaagatgtgaatcagtttgctcaagaggacaagacgatacaaggagaagaaaacagtcctgttcctcttcattacgtggacaactatgatgtaattcaatctgtttccacatgtgaacagtcttcctcgcatgctcccgtcgactctgttctgttgccaggcttacctgagttctcttaccttggctggggtcattggttcactctcagggatctggaacttgcaaccaactgtttttcaaaggataatgtaattggtgagggtggatatggtgttgtctaccgtggcagattatcaaatggcaccccagtggctgtcaaaaaaAtccttaacaatctaggacaagctgagagagaattcagagtggaagttgaagcaattggtcatgtccgacacaagaatttggttcgccttttggggtactgtgttgaaggcactcaaaggatgcttgtgtatgagtatgtcaacaatgggaatctcgaaagttggttacatggagagttatcccaatatagttctctcacttggctagcgcgcatgaaaattcttttgggtactgcaaaggcccttgcttacttacatgaggcaattgaaccaaaagttgtgcatcgtgatatcaaggccagtaatatattgattgatgatgagtttaacgccaaaatatctgactttggtttggccaagatgctaggtgctggtaaaagtcatattgctactcgagttatgggtacttttggctatgtcgcgcctgagtatgctaacagtggacttttgaatgaaaagagtgatgtctacagttttggggtggttctgctggaagctattacaggtagagatcccattgactatgatcgccctacagatgaggtaaacctaattgactggcttaaaatgatggttgccaacagacgatctgaagaagttgttgatccaaacctggagagaagaccatcgacaaaggagctcaaacgtgcccttttgacagctctgaggtgcatcgatttgaatgctgagaagagaccaaggatggaccaggtggtccggatgttggactctaatgaacccattcctcaagaggaaagaagacaacggcagaaccacatctctaataattcagagaccgagccattaagaggcaagagcagcagcggcaagagtgatgcccctgaaaatgagatgaggccacctcggtataagaatcgatcatttccccccaagtga

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Protein seq

MSSNSTLTDSLHERTIVFGLKLWVVIGISVGASLLGVLLILIVCLTLQTWIKRSRRTFKEIPITQIPSASKDIKEVRAVDEFLPNDFVVHDGLLLAIQNEPVEPVDKDVNQFAQEDKTIQGEENSPVPLHYVDNYDVIQSVSTCEQSSSHAPVDSVLLPGLPEFSYLGWGHWFTLRDLELATNCFSKDNVIGEGGYGVVYRGRLSNGTPVAVKKILNNLGQAEREFRVEVEAIGHVRHKNLVRLLGYCVEGTQRMLVYEYVNNGNLESWLHGELSQYSSLTWLARMKILLGTAKALAYLHEAIEPKVVHRDIKASNILIDDEFNAKISDFGLAKMLGAGKSHIATRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPIDYDRPTDEVNLIDWLKMMVANRRSEEVVDPNLERRPSTKELKRALLTALRCIDLNAEKRPRMDQVVRMLDSNEPIPQEERRQRQNHISNNSETEPLRGKSSSGKSDAPENEMRPPRYKNRSFPPK

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Gene Transcript Chromosome Start End Strand Source
OsNaBo_11g0000620 OsNaBo_11g0000620.02 Chr11 498269 502307 - IsoSeq
CDS seq

ccaagcaagcaatctccaaagtgcaagctttctcttcttcctgcgtctggatctcgctcaggtttctcctctgcctgccactccccatggctctggattcaggtcgctcttcagcattcactaccgtattcacttcttgaaggccaatttctggttcctcaccaaaggtacttgatgatccgaagatgtcatcaaactcca

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Protein seq

PSKQSPKCKLSLLPASGSRSGFSSACHSPWLWIQVALQHSLPYSLLEGQFLVPHQRYLMIRRCHQTP

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
SE Chr11 501460 502052 - OsNaBo_11g0000620.01 OsNaBo_11g0000620.02,OsNaBo_11g0000620.01 All

Expression

Leaf Root Panicle
FPKM 0.163879 24.996567 16.157648

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0108800 RBH 0.350593 0.050381 3.953881
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g01740 RBH 0.209218 0.064446 0.900080
Nipponbare | IRGSP 1.0 | RAP-db Os11g0108800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0000610 RBH 0.073961 34.707134 20.711126
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0000640 RBH 0.159364 9.554132 1.962885
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0000620 RBH 0.161793 25.444447 17.181427
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0000620 RBH 0.0 0.856843 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0000620 RBH 1.288495 18.901426 32.477024
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0007800 RBH 7.4161405 6.0050445 6.1673355
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0000610 RBH 0.035184 1.311804 2.076789
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0008700 RBH 7.0437075 2.0801915 10.838152
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0000490 RBH 0.037921 0.264925 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0000630 RBH 0.205175 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0000630 RBH 0.0 42.885612 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0000590 RBH 0.426746 0.0 1.834819
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0000650 RBH 0.242192 12.298848 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G000630 RBH 0.030900 3.054033 6.395711
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_12g0000650 RBH 0.0 7.239790 8.799751
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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