Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0000610 | OGI:12001390 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:454856-459307 | ||||||||
| Gene Symbol | RLCK358, OsRLCK358 | ||||||||||
| DNA seq | atgtttccttggactcgccaccgccacctcctccaatctcattctcctctccacctgctgcattactgcacctcctctacctccatctccagggatgccttcgccatcgcccgcgcgctctccatggcctcctcctcctcttcacacctccacgcgcacgcccttaagctgggcacgctcgctcacaccttcaacatgaattacctcctcatctactacgctaggcggggccttctcgactccgcactcaaggtgttcgacgaaatgccgcacaggaacctcgtctcctggacagccatggtctctgcctccacgcgcaatggcgcgcctcacctggggtttcgtttcttcgtttccatgatcaggagcggcttctgccccaacgagttcgcgctcgcaaccatgctcactgcctgccactccatgctggcccattcctccaataagctccccatcgccctttcactccacggtgttgccgtcagagctggcctggatagcaatccttttgtggggagctctctgctgctcatgtacgcaaagcatggccgcattgctgctgcacagcgtgcattcgcacatatcaggaacaaagatttgacgtgctggaatgccatgcttgaaggctatgtttcgaatggtttcgggcatcatgccataagtacagtgctcgtgatgcatcattctgggcttgcacctgaccggtacacctatatttctgctgttaaggcttgttcaatcagtgcgcagtgggatcttgggcgacagcttcactgtcttgtcatccacagcatgctcgagtccaatacctcggtcatgaattcccttgttgatatgtatttcagagctagacagaaggaaactgctgcttctgtctttcgcaagattagacaaaaagacaccgtgtcttggaataccatgttttcaggttttgcgcatgatgaagacgacaaagcagTTTttggctacttgatcgacatgtcacgaaccggatttAaacctaatgaggttactttttctgtcttgttgaggctgagtggtgctaaagagaatgcctcattgggccttcagatctttgcccttgcctatcgtcatggctatactgacaatgttcttgtagcaaacgctgtaatcaacatgctgttcagatgtggattgctcgaccgtgcatatggtttcttctgtagcctcactttcagaaacattgtgacatggaacgagataattgcaggttatggtctcttcagtcgctctgaagatgcaatgaggctcttccgcagtttggtttgcattggagaaagacctgatgagttcacctattcagctgttctgtctgccttccaggaagctcatggcgcaagggatcatgagcaaatccacgcaattattctgaaacaaggttttgcctcctgtcagttcgtgtccacttcactgatcaaggcaaatgcagcagcgtttgggtctgttcagagttcactgaaaatcatcgaggactctggcaagatggagctggtgtcatggggagccattatctctgcattcctgaagcatggcctgaacgatgaggtcattttccttttcaacttgtttagaggtgactccaccaacaagcctgatgagttcatcctggcaaccgtcctaaatgcctgtgcaaatgctgcgttgatcaggcactgcagatgcatccattcgcttgttctcaagacaggtcattccaatcacttctgcgtagccagcgctgttgttgatgcctacgcgaagtgcggtgagattacctctgcagagagcgctttcaccgctgtttcatcagcaaccaacgatgccatcatgtacaacaccatgctgacagcttatgccaaccatggtttgatccacgaagctctcaacctctacgaagagatgacaaaggctaaactgaatccaacaccagccacattcgttgccattctgtcggcctgcagccatttggggCtagtcgagcaggggaagcttgcgttcagcaccatgctgtctgcatatggcatgcatccagaaagagccaactacgcctgcctggttgatctcctggcaagaaaggggctactcgatgaggcgaagggtgtgatcgatgcaatgccgttccaaccatggcctgcagtttggaggtcgctggtgaacggttgccggatacatgggaacaagcaacttggcgtgcttgcggcagagcagatcctgagaatggcgccgagcagcgatggcgcttatgtttcgctgtcaaacgtctatgctgacgatggggaatggcagtctgcagaggagaccaggaggaggatggttcagaataagctccagaaggtgcacgggtacagcagggttgagatgtagcaggaatattctatatagaatagattggctaacagcaactactgactactgaaaattcataaccacgttaagtgttggaggaagcacagactgaacattaatacttctttcttgcacaatgtttggaagaaagcaagtaatcctggaaacaCtgtagtatgggtatttggtgggtaatgctagtataacccagaaaggaggttcatgtatttttagcaacaactggagacccccttaacaagaagattttgatttagttcgagcgaaaacacggatcagaaacctcaaattcattttcctcttcttctgcggtttgtgcatcgtcgtcgcaagcaagaagcatcgtctacaatgaatacaagaacagcagcaaggaaggaagaaggggagaaactggagagcgaagaagtgttaccagaaaggagataagtaaaggcttggacgggcggcgcagccggtcgatggcgtgggcctcgggcaggcagcagctgcagtggggcgacgcggtctctggcgcggcacggcatcaagaaagaggaagcaggttatgggtactttttgggtaagtttttcatgcttttgtataatgaattaatgcgtgttctctttgtattatgttcaaatcttaaccactgtaatttcagaaaaattctgttggtgctaatcactaatggtactcaacaattgtgttattattttgcagcaatgtcgcgcctgagtatgctaacagtggacttttgaatgaaaagagtgatgtctacagttttgggtggttctgctggaagctattacaggtagagatcccattgactatgatcgccctccagatgaggtaatacttgttgacatctttttcctgtattgttcagtgccaagttattacataaaagcatgcaactacaatcacttatgaagcaatcgagaagctatgaacttatgatttgataagtactgtaacacactactgatcatttgtaggtaaacctagttgactggcttaaaatgatggttgccaacagacgatctgaagaagttgttgatccaaacctggagagaagaccatcgacaaaggagctcaaacgtgcccttttgacagctctgaggtgcatcgatttgaatgctgagaagagaccaaggatggaccaggtggtccggatgttggactctaatgaacccattcctcaagaggtttgattcgtgacaaaaataaatatgcatacatatgataggtgatatatcatatacatgtgtgcatatcagatgcaaaggctgtagctgtaaactcttcctttacctaaagagtacgattagtgatttacctggaaatcatgcatattcctgctatattgtgctataagtacatccaatgttcatctcagagtaaaattagtgacagatggacaacgtgagcaatttaaatttattctgtatatctgtcttagcagcattagccgacatagagagcattgcataacatggtattaaggtttatcataatgaaatcatggctttattctatcattgcctcatgaattaaacacatgtccactgatttgcaggaaagaagacaacgacagaaccacatctctaataatttagaaaccgagccattaagaggcaagagtagcagcggcaagagtgatgcccctgaaaatgagatgaggccacctcggtataagaatcgatcatttccccccaagtgaaaagtgaaaagcatactagagtataagttatggagttacctgcgaagctctcaatacataatgaattaatcaattgttttctcttttcttatttctcttgacttgacaattttttgtgttccctgggaggctggggagtggccaactggccattgctgttacacatatttgtatttcttgaaacatgtacagtgctGgtgtgtgatacatgtacagtagcttgtgtgtgatagatagttgaaggatgcacatgagagcataaaagctatttagaagctagtggctggtgtgaggaagtgcatgaagaaacaaatgaaatagcttttcatattttctgtatactctaagagtacaaagaggcaaatgaaagaaaaattgactttca
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| CDS seq | atgtttccttggactcgccaccgccacctcctccaatctcattctcctctccacctgctgcattactgcacctcctctacctccatctccagggatgccttcgccatcgcccgcgcgctctccatggcctcctcctcctcttcacacctccacgcgcacgcccttaagctgggcacgctcgctcacaccttcaacatgaattacctcctcatctactacgctaggcggggccttctcgactccgcactcaaggtgttcgacgaaatgccgcacaggaacctcgtctcctggacagccatggtctctgcctccacgcgcaatggcgcgcctcacctggggtttcgtttcttcgtttccatgatcaggagcggcttctgccccaacgagttcgcgctcgcaaccatgctcactgcctgccactccatgctggcccattcctccaataagctccccatcgccctttcactccacggtgttgccgtcagagctggcctggatagcaatccttttgtggggagctctctgctgctcatgtacgcaaagcatggccgcattgctgctgcacagcgtgcattcgcacatatcaggaacaaagatttgacgtgctggaatgccatgcttgaaggctatgtttcgaatggtttcgggcatcatgccataagtacagtgctcgtgatgcatcattctgggcttgcacctgaccggtacacctatatttctgctgttaaggcttgttcaatcagtgcgcagtgggatcttgggcgacagcttcactgtcttgtcatccacagcatgctcgagtccaatacctcggtcatgaattcccttgttgatatgtatttcagagctagacagaaggaaactgctgcttctgtctttcgcaagattagacaaaaagacaccgtgtcttggaataccatgttttcaggttttgcgcatgatgaagacgacaaagcagTTTttggctacttgatcgacatgtcacgaaccggatttAaacctaatgaggttactttttctgtcttgttgaggctgagtggtgctaaagagaatgcctcattgggccttcagatctttgcccttgcctatcgtcatggctatactgacaatgttcttgtagcaaacgctgtaatcaacatgctgttcagatgtggattgctcgaccgtgcatatggtttcttctgtagcctcactttcagaaacattgtgacatggaacgagataattgcaggttatggtctcttcagtcgctctgaagatgcaatgaggctcttccgcagtttggtttgcattggagaaagacctgatgagttcacctattcagctgttctgtctgccttccaggaagctcatggcgcaagggatcatgagcaaatccacgcaattattctgaaacaaggttttgcctcctgtcagttcgtgtccacttcactgatcaaggcaaatgcagcagcgtttgggtctgttcagagttcactgaaaatcatcgaggactctggcaagatggagctggtgtcatggggagccattatctctgcattcctgaagcatggcctgaacgatgaggtcattttccttttcaacttgtttagaggtgactccaccaacaagcctgatgagttcatcctggcaaccgtcctaaatgcctgtgcaaatgctgcgttgatcaggcactgcagatgcatccattcgcttgttctcaagacaggtcattccaatcacttctgcgtagccagcgctgttgttgatgcctacgcgaagtgcggtgagattacctctgcagagagcgctttcaccgctgtttcatcagcaaccaacgatgccatcatgtacaacaccatgctgacagcttatgccaaccatggtttgatccacgaagctctcaacctctacgaagagatgacaaaggctaaactgaatccaacaccagccacattcgttgccattctgtcggcctgcagccatttggggCtagtcgagcaggggaagcttgcgttcagcaccatgctgtctgcatatggcatgcatccagaaagagccaactacgcctgcctggttgatctcctggcaagaaaggggctactcgatgaggcgaagggtgtgatcgatgcaatgccgttccaaccatggcctgcagtttggaggtcgctggtgaacggttgccggatacatgggaacaagcaacttggcgtgcttgcggcagagcagatcctgagaatggcgccgagcagcgatggcgcttatgtttcgctgtcaaacgtctatgctgacgatggggaatggcagtctgcagaggagaccaggaggaggatggttcagaataagctccagaaggtgcacggcaatgtcgcgcctgagtatgctaacagtggacttttgaatgaaaagagtgatgtctacagttttgggtggttctgctggaagctattacaggtaaacctagttgactggcttaaaatgatggttgccaacagacgatctgaagaagttgttgatccaaacctggagagaagaccatcgacaaaggagctcaaacgtgcccttttgacagctctgaggtgcatcgatttgaatgctgagaagagaccaaggatggaccaggtggtccggatgttggactctaatgaacccattcctcaagaggaaagaagacaacgacagaaccacatctctaataatttagaaaccgagccattaagaggcaagagtagcagcggcaagagtgatgcccctgaaaatgagatgaggccacctcggtataagaatcgatcatttccccccaagtga
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| Protein seq | MFPWTRHRHLLQSHSPLHLLHYCTSSTSISRDAFAIARALSMASSSSSHLHAHALKLGTLAHTFNMNYLLIYYARRGLLDSALKVFDEMPHRNLVSWTAMVSASTRNGAPHLGFRFFVSMIRSGFCPNEFALATMLTACHSMLAHSSNKLPIALSLHGVAVRAGLDSNPFVGSSLLLMYAKHGRIAAAQRAFAHIRNKDLTCWNAMLEGYVSNGFGHHAISTVLVMHHSGLAPDRYTYISAVKACSISAQWDLGRQLHCLVIHSMLESNTSVMNSLVDMYFRARQKETAASVFRKIRQKDTVSWNTMFSGFAHDEDDKAVFGYLIDMSRTGFKPNEVTFSVLLRLSGAKENASLGLQIFALAYRHGYTDNVLVANAVINMLFRCGLLDRAYGFFCSLTFRNIVTWNEIIAGYGLFSRSEDAMRLFRSLVCIGERPDEFTYSAVLSAFQEAHGARDHEQIHAIILKQGFASCQFVSTSLIKANAAAFGSVQSSLKIIEDSGKMELVSWGAIISAFLKHGLNDEVIFLFNLFRGDSTNKPDEFILATVLNACANAALIRHCRCIHSLVLKTGHSNHFCVASAVVDAYAKCGEITSAESAFTAVSSATNDAIMYNTMLTAYANHGLIHEALNLYEEMTKAKLNPTPATFVAILSACSHLGLVEQGKLAFSTMLSAYGMHPERANYACLVDLLARKGLLDEAKGVIDAMPFQPWPAVWRSLVNGCRIHGNKQLGVLAAEQILRMAPSSDGAYVSLSNVYADDGEWQSAEETRRRMVQNKLQKVHGNVAPEYANSGLLNEKSDVYSFGWFCWKLLQVNLVDWLKMMVANRRSEEVVDPNLERRPSTKELKRALLTALRCIDLNAEKRPRMDQVVRMLDSNEPIPQEERRQRQNHISNNLETEPLRGKSSSGKSDAPENEMRPPRYKNRSFPPK |
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| Function | Pentatricopeptide repeat-containing protein At4g13650 [UniProtKB/Swiss-Prot:Q9SVP7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0000610 | OsLima_12g0000610.01 | Chr12 | 454856 | 459307 | + | NAM | ||
| CDS seq | atgtttccttggactcgccaccgccacctcctccaatctcattctcctctccacctgctgcattactgcacctcctctacctccatctccagggatgccttcgccatcgcccgcgcgctctccatggcctcctcctcctcttcacacctccacgcgcacgcccttaagctgggcacgctcgctcacaccttcaacatgaattacctcctcatctactacgctaggcggggccttctcgactccgcactcaaggtgttcgacgaaatgccgcacaggaacctcgtctcctggacagccatggtctctgcctccacgcgcaatggcgcgcctcacctggggtttcgtttcttcgtttccatgatcaggagcggcttctgccccaacgagttcgcgctcgcaaccatgctcactgcctgccactccatgctggcccattcctccaataagctccccatcgccctttcactccacggtgttgccgtcagagctggcctggatagcaatccttttgtggggagctctctgctgctcatgtacgcaaagcatggccgcattgctgctgcacagcgtgcattcgcacatatcaggaacaaagatttgacgtgctggaatgccatgcttgaaggctatgtttcgaatggtttcgggcatcatgccataagtacagtgctcgtgatgcatcattctgggcttgcacctgaccggtacacctatatttctgctgttaaggcttgttcaatcagtgcgcagtgggatcttgggcgacagcttcactgtcttgtcatccacagcatgctcgagtccaatacctcggtcatgaattcccttgttgatatgtatttcagagctagacagaaggaaactgctgcttctgtctttcgcaagattagacaaaaagacaccgtgtcttggaataccatgttttcaggttttgcgcatgatgaagacgacaaagcagTTTttggctacttgatcgacatgtcacgaaccggatttAaacctaatgaggttactttttctgtcttgttgaggctgagtggtgctaaagagaatgcctcattgggccttcagatctttgcccttgcctatcgtcatggctatactgacaatgttcttgtagcaaacgctgtaatcaacatgctgttcagatgtggattgctcgaccgtgcatatggtttcttctgtagcctcactttcagaaacattgtgacatggaacgagataattgcaggttatggtctcttcagtcgctctgaagatgcaatgaggctcttccgcagtttggtttgcattggagaaagacctgatgagttcacctattcagctgttctgtctgccttccaggaagctcatggcgcaagggatcatgagcaaatccacgcaattattctgaaacaaggttttgcctcctgtcagttcgtgtccacttcactgatcaaggcaaatgcagcagcgtttgggtctgttcagagttcactgaaaatcatcgaggactctggcaagatggagctggtgtcatggggagccattatctctgcattcctgaagcatggcctgaacgatgaggtcattttccttttcaacttgtttagaggtgactccaccaacaagcctgatgagttcatcctggcaaccgtcctaaatgcctgtgcaaatgctgcgttgatcaggcactgcagatgcatccattcgcttgttctcaagacaggtcattccaatcacttctgcgtagccagcgctgttgttgatgcctacgcgaagtgcggtgagattacctctgcagagagcgctttcaccgctgtttcatcagcaaccaacgatgccatcatgtacaacaccatgctgacagcttatgccaaccatggtttgatccacgaagctctcaacctctacgaagagatgacaaaggctaaactgaatccaacaccagccacattcgttgccattctgtcggcctgcagccatttggggCtagtcgagcaggggaagcttgcgttcagcaccatgctgtctgcatatggcatgcatccagaaagagccaactacgcctgcctggttgatctcctggcaagaaaggggctactcgatgaggcgaagggtgtgatcgatgcaatgccgttccaaccatggcctgcagtttggaggtcgctggtgaacggttgccggatacatgggaacaagcaacttggcgtgcttgcggcagagcagatcctgagaatggcgccgagcagcgatggcgcttatgtttcgctgtcaaacgtctatgctgacgatggggaatggcagtctgcagaggagaccaggaggaggatggttcagaataagctccagaaggtgcacggcaatgtcgcgcctgagtatgctaacagtggacttttgaatgaaaagagtgatgtctacagttttgggtggttctgctggaagctattacaggtaaacctagttgactggcttaaaatgatggttgccaacagacgatctgaagaagttgttgatccaaacctggagagaagaccatcgacaaaggagctcaaacgtgcccttttgacagctctgaggtgcatcgatttgaatgctgagaagagaccaaggatggaccaggtggtccggatgttggactctaatgaacccattcctcaagaggaaagaagacaacgacagaaccacatctctaataatttagaaaccgagccattaagaggcaagagtagcagcggcaagagtgatgcccctgaaaatgagatgaggccacctcggtataagaatcgatcatttccccccaagtga
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| Protein seq | MFPWTRHRHLLQSHSPLHLLHYCTSSTSISRDAFAIARALSMASSSSSHLHAHALKLGTLAHTFNMNYLLIYYARRGLLDSALKVFDEMPHRNLVSWTAMVSASTRNGAPHLGFRFFVSMIRSGFCPNEFALATMLTACHSMLAHSSNKLPIALSLHGVAVRAGLDSNPFVGSSLLLMYAKHGRIAAAQRAFAHIRNKDLTCWNAMLEGYVSNGFGHHAISTVLVMHHSGLAPDRYTYISAVKACSISAQWDLGRQLHCLVIHSMLESNTSVMNSLVDMYFRARQKETAASVFRKIRQKDTVSWNTMFSGFAHDEDDKAVFGYLIDMSRTGFKPNEVTFSVLLRLSGAKENASLGLQIFALAYRHGYTDNVLVANAVINMLFRCGLLDRAYGFFCSLTFRNIVTWNEIIAGYGLFSRSEDAMRLFRSLVCIGERPDEFTYSAVLSAFQEAHGARDHEQIHAIILKQGFASCQFVSTSLIKANAAAFGSVQSSLKIIEDSGKMELVSWGAIISAFLKHGLNDEVIFLFNLFRGDSTNKPDEFILATVLNACANAALIRHCRCIHSLVLKTGHSNHFCVASAVVDAYAKCGEITSAESAFTAVSSATNDAIMYNTMLTAYANHGLIHEALNLYEEMTKAKLNPTPATFVAILSACSHLGLVEQGKLAFSTMLSAYGMHPERANYACLVDLLARKGLLDEAKGVIDAMPFQPWPAVWRSLVNGCRIHGNKQLGVLAAEQILRMAPSSDGAYVSLSNVYADDGEWQSAEETRRRMVQNKLQKVHGNVAPEYANSGLLNEKSDVYSFGWFCWKLLQVNLVDWLKMMVANRRSEEVVDPNLERRPSTKELKRALLTALRCIDLNAEKRPRMDQVVRMLDSNEPIPQEERRQRQNHISNNLETEPLRGKSSSGKSDAPENEMRPPRYKNRSFPPK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0109800 | RBH | 0.0 | 0.018228 | 0.392669 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01910 | RBH | 0.0 | 0.000000 | 0.075951 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0109800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000590 | RBH | 0.0 | 0.0 | 0.716230 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000780 | RBH | 0.040538 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000750 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000610 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000700 | SBH | 0.0 | 1.340487 | 0.284887 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0008600 | RBH | 0.066011 | 0.0905195 | 0.0047665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000690 | SBH | 0.0 | 0.062266 | 0.143531 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0008800 | RBH | 0.0495275 | 0.055989 | 0.6972675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000570 | RBH | 0.019168 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000700 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000720 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000720 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0000730 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000620 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0000780 | RBH | 0.000000 | 0.0 | 0.0 |
