Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0513500 | OGI:11054910 | 13/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:18358013-18360301 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAGCGACTTTTTGCTGCATCTACAACCTTATGCACAGAATTACATTGAGGTCAAGAACGCAAGGTCTGGGGTATGCTATACAATCCTATTAATACTAATGTCAAGCATATTTGTGCTTTTCATCGCAAAATTAACAATTCTGCCTAGATGCTATTCACTCCCTTGCATATATTGTTATGCTACTAGCTCCTAGCTGCTAGGCATTTTATTGTTGTTGTTGCTGGCTTCTCTAGAAGCATTAAGACGATCATAGCAGTAGCTTCGATGTTATTTGCTATGAAATAGTTTGTAGCAAATAATTTAAAATCACCATAAATCACCATATGGTCAAGTAGCATGTTCAGTTCTTGTTTACTTAGCAAGTAGCAAATCATGTATGGATTTGTTAGATAGCAATGCACAACATAAGGTTTGTACTTTGTAGCTGAGTCATATGTACAATTGCTAAAAAAAAATGGAGCTGCTAGCAAGTAAGATATTGTTGCCTTTACCTAATTTGGTAATAGCTGCATACTGATCTTTGTGGTTGCTAGCTAATAAACAGAACTTTATCATGTCTCTAAAACATTCACGACTTGTTTTGTTAAACTTGTATGAAACACAATGGTTCAAATGGAATTTGAACCAGACGCTAGGTTAACTCCTCACTTTACATGGCAGATATCTGAACATATTTGATATTCTTTGTTAGCATTAAGGCATTTGCAAGTGGTTTGACTCCTCACTGTATATTCTTGTTAACTCCCCACTTCAAAGCATTGAAATTTTTCAAAATTTGGTGGTTGCATGCCCTTGTTACCATTTTACAAACAACATACCCTCTTCAGTTATATAAGACCCAAACATGTTTCAGTATTCAAACATGTTAGTTTTTTAGCCGAAACCATTGGATTGATTCTTCAATTTACTTTTGGTATGACCATGGTTTTGTAAGAACATACTTTATTAAAATATAGTATGTAAAGTTGAAATAATGAGCCACTAGTTTAGTCTTGCTCTTGATGTTTCAGTTTGGCCACCGTTCTTGTCCTGAAAGTGTTGTTTCTCCACCAGTATGACAGGGTAAAAGAACAAACTAGGTTGCATGAAGCATTTGATATACATTTGGCTTCTGGTGCATTAGATGATTTTGTCCGTCGGACTAGTTCTTCAAAGGTAGGGAAATATCATAAACTTACTGTACGTGCAAAAACAGGACTACACATTCTGCTCAACTGTTTGTTATTTGTTGTACCAATGATTTTCAGGATGATTTCATTAAGATTATTCTTGATGATGATATTTTGCGTAGTCAGTTTACAGATCTGGATTACGATCTCCTGAAATTGTCATATGAGGTACTATTTTCTTGACGTATTTTCATTTTTCACAAATTATTTCAAAAGTATTTTCATGAGAACTGTCCCTTACATGTTAGTGCCCTCTTACAGCGACGAGCTAAACTTCTCAGTAAGCAAGATCAATTATGCTTATATTGCAAACACATGAAAAGTGCTGTCATAAATTTACAGGTATGTGATCTATCTGTTCTGTCTTGCTTGTCCTTAATGTTCACTAAAATTATCTCAAGTTTTTTTTCCCTCAAATTACTACATTCTTGATGTTACTTAATCACGGAGTGAAGGTAATTTGTATCACTATATGTATTTAACATGCTATAGCACCCTATCTGAAGTGGCAAATATATAAGCTTGGATATGGTCTCATTACTAGCTAATTGTGATTGTATAAATTTTCAGCATAGAGATAGACTTGAAAGTTTGATATGTGAGCTTGAGGCAGAAGGTTTCTTCAGTGTGGATGATGATTCTATTGAATGGGTACTTATGGCACTAAATAGTGTTTTACTTTTGCTTTATAGTGCATGCAAAATCAATAAATGCTTTACCTAATTCTATGTTTTATTTTTTGTGTGCTTGCATTTATAGGAAAACGAACACTTTTCAGAACTTGTGGACGAATTCAATGAGCATGTCTTTGCTGGGATTCACCTTCCAAAATATTATGTTATTCGTGGAATTATGGTCTGATCTTTTCTCATGCCTCACCATCGTTTGTCTGTTAACTAAAATAGTGAAACCTGATTCAATGTGTTAAATATCAGGATTATCGGGAAATGTTAAATATGAAGGATAGCACTTGGGATGATGCTTTCTCTGTGGTAGGATAAGTCATCTCCTTGAACTAGTAGATTTTCCTTGTGAAACAAGTCCTTATATTGTCATTTATTGGTTTGTTTCAGGTTGTTGATGGAGCATTCTGTAGATGGATGGAAGATCGTGATCTG
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| CDS seq | TCAAGCGACTTTTTGCTGCATCTACAACCTTATGCACAGAATTACATTGAGGTCAAGAACGCAAGGTCTGGGTATGACAGGGTAAAAGAACAAACTAGGTTGCATGAAGCATTTGATATACATTTGGCTTCTGGTGCATTAGATGATTTTGTCCGTCGGACTAGTTCTTCAAAGGATGATTTCATTAAGATTATTCTTGATGATGATATTTTGCGTAGTCAGTTTACAGATCTGGATTACGATCTCCTGAAATTGTCATATGAGCGACGAGCTAAACTTCTCAGTAAGCAAGATCAATTATGCTTATATTGCAAACACATGAAAAGTGCTGTCATAAATTTACAGCATAGAGATAGACTTGAAAGTTTGATATGTGAGCTTGAGGCAGAAGGTTTCTTCAGTGTGGATGATGATTCTATTGAATGGGAAAACGAACACTTTTCAGAACTTGTGGACGAATTCAATGAGCATGTCTTTGCTGGGATTCACCTTCCAAAATATTATGTTATTCGTGGAATTATGGATTATCGGGAAATGTTAAATATGAAGGATAGCACTTGGGATGATGCTTTCTCTGTGGTTGTTGATGGAGCATTCTGTAGATGGATGGAAGATCGTGATCTG
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| Protein seq | SSDFLLHLQPYAQNYIEVKNARSGYDRVKEQTRLHEAFDIHLASGALDDFVRRTSSSKDDFIKIILDDDILRSQFTDLDYDLLKLSYERRAKLLSKQDQLCLYCKHMKSAVINLQHRDRLESLICELEAEGFFSVDDDSIEWENEHFSELVDEFNEHVFAGIHLPKYYVIRGIMDYREMLNMKDSTWDDAFSVVVDGAFCRWMEDRDL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0513500 | Os11t0513500-00 | Chr11 | 18358013 | 18360301 | + | irgsp1_rep | ||
| CDS seq | TCAAGCGACTTTTTGCTGCATCTACAACCTTATGCACAGAATTACATTGAGGTCAAGAACGCAAGGTCTGGGTATGACAGGGTAAAAGAACAAACTAGGTTGCATGAAGCATTTGATATACATTTGGCTTCTGGTGCATTAGATGATTTTGTCCGTCGGACTAGTTCTTCAAAGGATGATTTCATTAAGATTATTCTTGATGATGATATTTTGCGTAGTCAGTTTACAGATCTGGATTACGATCTCCTGAAATTGTCATATGAGCGACGAGCTAAACTTCTCAGTAAGCAAGATCAATTATGCTTATATTGCAAACACATGAAAAGTGCTGTCATAAATTTACAGCATAGAGATAGACTTGAAAGTTTGATATGTGAGCTTGAGGCAGAAGGTTTCTTCAGTGTGGATGATGATTCTATTGAATGGGAAAACGAACACTTTTCAGAACTTGTGGACGAATTCAATGAGCATGTCTTTGCTGGGATTCACCTTCCAAAATATTATGTTATTCGTGGAATTATGGATTATCGGGAAATGTTAAATATGAAGGATAGCACTTGGGATGATGCTTTCTCTGTGGTTGTTGATGGAGCATTCTGTAGATGGATGGAAGATCGTGATCTG
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| Protein seq | SSDFLLHLQPYAQNYIEVKNARSGYDRVKEQTRLHEAFDIHLASGALDDFVRRTSSSKDDFIKIILDDDILRSQFTDLDYDLLKLSYERRAKLLSKQDQLCLYCKHMKSAVINLQHRDRLESLICELEAEGFFSVDDDSIEWENEHFSELVDEFNEHVFAGIHLPKYYVIRGIMDYREMLNMKDSTWDDAFSVVVDGAFCRWMEDRDL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0513500 | RBH | 0.000000 | 0.0 | 2.868831 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g31430 | RBH | 0.141574 | 0.0 | 0.579489 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0513900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0015160 | RBH | 0.000000 | 0.0 | 7.346466 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0015130 | SBH | 0.0 | 0.0 | 5.416603 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0015060 | RBH | 0.0 | 0.0 | 7.889315 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014900 | SBH | 1.078193 | 0.742818 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0015210 | SBH | 0.0 | 0.0 | 2.673443 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0290700 | SBH | 0.2549075 | 0.8485465 | 19.3007695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0015380 | RBH | 0.0 | 0.0 | 0.347472 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0302200 | SBH | 0.0145545 | 0.8422925 | 5.815473 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0015490 | SBH | 0.025784 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0015280 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0015170 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014750 | RBH | 0.0 | 0.0 | 0.085360 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0015080 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014910 | SBH | 0.0 | 0.0 | 0.253244 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0015190 | RBH | 0.0 | 0.0 | 2.862659 |
