Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0420600 | OGI:04011900 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:20790084-20792816 | ||||||||
| Gene Symbol | SDRLK-27 | ||||||||||
| DNA seq | CATGGCTCTTCCCATCACTGTCCTGTTCCTCCTCTTCACACTGCACATTCCTGCATCCTGCAAGGTGACAGACACCATCTCAGCTGGGGAGACACTCGCCGGCAATGACATACTTGTCTCCAGCAACGGCAAGTTTGCGCTTGGCTTCTTCCCAACCAGCAGTAAGTCCTCCCACAATGCTTCAAACTGGTACCTGGGGATATGGTTCAACCAGGTGCCAAAGCTCACTCCAGCATGGGTTGCCAATGGAGATGAGCCTGTCACTGGCCCCACTTCGCCGGAGGCCACAATCTCCGGTGACGGAAACCTTGTCATCTTAGATCAGGCCACAAAGTCCATCTTCTGGTCAACCCAAGCTGACATCACAGCAAACACAACAATGGTCAAGCTATTGGATAATGGCAACCTTGTCCTGCAGAACACCTCAAATTCTTCGGTTGTCTTGTGGCAAAGCTTTGACTACCCAACAAATACCCATCTCGCCGGTGCGAAGCTAGGCCGGAACAAGGTCACTGGCTTAAACCGCCGTCTTGTTTCCAGGAAAAACTCTGTAGACCCAGCTTCTGGCATGTACAGTTACGAGTTAACTGACAACAATGGTTCTACCAGGTTCATCCTTGCAGCTCTCAACTCCTCTATACCATATTGGTCTAGTGGAGAATGGAACGGACATTACTTTGGTTCCATACCAGAGATGACAGGTCAACGCTTAATTGATTTTACTTTTGTCAACAATGATGAAGAAGTGTACTTCACATATACCTTACTAGATAACGCAACGATCATGCGTTTTATGCTGGACATCTCTGGTCAGACCAAGATATTTTTGTGGGTGGAGCATGTGCAAGATTGGGTACCAACCTACACCAACCCAAAGCAGTGTGATGTGTATGGCATTTGTGGAGCTTTCACAGTCTGCGAAGAGAGCAAGCTTCCTATCTGCAAGTGTATGAAGGGCTTCTCTGTACGATCACCCAATGACTGGGAGCTAGATGATCGAACAGGCGGCTGTGTGAGAAATACTCCATTAGACTGTGGTATAAACAGAAACACCAGTATGCAAGACAGGTTCCACCCTATGCCGTGTGTTGGATTACCCAGTAATGGCCAAATCATAGAAGATGTTACAAGTGCAGGTGGATGTGCACAAATTTGCCTGAGCAACTGCACTTGCACAGCATATTACTATGGTAATACTGGATGCTCTGTTTGGAATGATGAATTGATTAATGTGAAACAGCTACAATGTGGTGATATTGCTAATACTGATGGAGCAATTCTTTACCTTCGCCTTGCTGCCAAAGAGGTGCAAAGTATAAAAAGCAGTGGACGATCAATATTCATTGGCGTTGCCATCACTGCAAGTGTTGCTTCCTTTGCTTTGGCACTCTTCTTGATAGCGAAGATCCCAAGGAACAAGAGTTGGCTGCTTGGTCACAGAAGAAAGAATTTTCATAGTGGTAGTGGAGTTATTGCATTTAGATATGCTGATCTGCAACATGCAACAAAAAACTTTTCAGATAAGCTAGGGGCAGGTGGTTTTGGCTCAGTATTCAAAGGGCTTCTTAATGAGTCTACTGTCATAGCAGTAAAAAGGCTTGATGGTGCTCGTCAAGGAGAGAAGCAATTCAGAGCTGAAGTAGGATCAATTGGAATCATCCAACACATCAATTTAGTTAAACTAATTGGTTTCTGTTGTGAGGGTGATAGAAGATTGCTTGTCTATGAACACATGCCAAACCTCTCTCTTGATACCCATTTATTTCACAATGACGCTACAGTCTTGAAATGGAGCATAAGGTATCAAATTGCTCTTGGAGTTGCTAGAGGACTAGCTTACCTTCATGATAGTTGCCAGGATTGCATTATACACTGTGACATTAAACCAGAGAACATACTTCTTGATGCATCATTTGTTCCAAAAATCGCAGATTTTGGGATGGCAAAGTTTCTGGGAAGGGAGTTTACTCAAGTTCTCACTACAATGCGAGGAACTATAGGGTATCTTGCACCTGAGTGGATTAGTGGTACAGTTATTACATCAAAGGTTGATGTCTACAGCTATGGAATGGTTTTGCTGGAAATCATCTCAGGAACGAGGAACTCAAGCAAAGAATTTGCAACTCGTGATGACTATGAATATTTCCCTCTGTTAGTGGCACATAAGCTGCTGGATGGTAATGCTGGGAGTTTGGTGGACCAAAATTTACATGGCGATGTTGATTTGGAGCAGGTAGAAAGAGCTTTCAGGGTTGCATGCTGGTGTATTCAAGATAATGAGCTTGATCGACCTACAATGAGTGAAGTTGTTCAATATCTCGAAGGTCTTCTTGAAGTTGGCATACCCCCAGTGCCACGACTACTTCAAGCTATTGCAGGCAACCCATATTCAAAGTGAGCACTAAGCAGAATTTTTCTTATACAAACATCTTAAATTGAGAACTTATCATAATCCCAGAAATATATGTGCGGCTGAGAGGCATGATAAGAGCATGATATTTTTCCATGACATCATTTTGTATAATATCATAAAAGAATATGACACATCAACATTCCATGCCAGCACTCCTAACTGCATCTTTTTTTTTTGTTATATGTGCAGGTAGTTGATGGGTACCTGAACCAAGCTTCAGAAGAGGCAGGCCAACTGTAAGATACAATAGAGCACCGTGCACCTCATTCTTGACACGAAAGTAGCTCTGATGTAATCCTGGGGCTTCCCTTCAGTAGTTG
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| CDS seq | ATGGCTCTTCCCATCACTGTCCTGTTCCTCCTCTTCACACTGCACATTCCTGCATCCTGCAAGGTGACAGACACCATCTCAGCTGGGGAGACACTCGCCGGCAATGACATACTTGTCTCCAGCAACGGCAAGTTTGCGCTTGGCTTCTTCCCAACCAGCAGTAAGTCCTCCCACAATGCTTCAAACTGGTACCTGGGGATATGGTTCAACCAGGTGCCAAAGCTCACTCCAGCATGGGTTGCCAATGGAGATGAGCCTGTCACTGGCCCCACTTCGCCGGAGGCCACAATCTCCGGTGACGGAAACCTTGTCATCTTAGATCAGGCCACAAAGTCCATCTTCTGGTCAACCCAAGCTGACATCACAGCAAACACAACAATGGTCAAGCTATTGGATAATGGCAACCTTGTCCTGCAGAACACCTCAAATTCTTCGGTTGTCTTGTGGCAAAGCTTTGACTACCCAACAAATACCCATCTCGCCGGTGCGAAGCTAGGCCGGAACAAGGTCACTGGCTTAAACCGCCGTCTTGTTTCCAGGAAAAACTCTGTAGACCCAGCTTCTGGCATGTACAGTTACGAGTTAACTGACAACAATGGTTCTACCAGGTTCATCCTTGCAGCTCTCAACTCCTCTATACCATATTGGTCTAGTGGAGAATGGAACGGACATTACTTTGGTTCCATACCAGAGATGACAGGTCAACGCTTAATTGATTTTACTTTTGTCAACAATGATGAAGAAGTGTACTTCACATATACCTTACTAGATAACGCAACGATCATGCGTTTTATGCTGGACATCTCTGGTCAGACCAAGATATTTTTGTGGGTGGAGCATGTGCAAGATTGGGTACCAACCTACACCAACCCAAAGCAGTGTGATGTGTATGGCATTTGTGGAGCTTTCACAGTCTGCGAAGAGAGCAAGCTTCCTATCTGCAAGTGTATGAAGGGCTTCTCTGTACGATCACCCAATGACTGGGAGCTAGATGATCGAACAGGCGGCTGTGTGAGAAATACTCCATTAGACTGTGGTATAAACAGAAACACCAGTATGCAAGACAGGTTCCACCCTATGCCGTGTGTTGGATTACCCAGTAATGGCCAAATCATAGAAGATGTTACAAGTGCAGGTGGATGTGCACAAATTTGCCTGAGCAACTGCACTTGCACAGCATATTACTATGGTAATACTGGATGCTCTGTTTGGAATGATGAATTGATTAATGTGAAACAGCTACAATGTGGTGATATTGCTAATACTGATGGAGCAATTCTTTACCTTCGCCTTGCTGCCAAAGAGGTGCAAAGTATAAAAAGCAGTGGACGATCAATATTCATTGGCGTTGCCATCACTGCAAGTGTTGCTTCCTTTGCTTTGGCACTCTTCTTGATAGCGAAGATCCCAAGGAACAAGAGTTGGCTGCTTGGTCACAGAAGAAAGAATTTTCATAGTGGTAGTGGAGTTATTGCATTTAGATATGCTGATCTGCAACATGCAACAAAAAACTTTTCAGATAAGCTAGGGGCAGGTGGTTTTGGCTCAGTATTCAAAGGGCTTCTTAATGAGTCTACTGTCATAGCAGTAAAAAGGCTTGATGGTGCTCGTCAAGGAGAGAAGCAATTCAGAGCTGAAGTAGGATCAATTGGAATCATCCAACACATCAATTTAGTTAAACTAATTGGTTTCTGTTGTGAGGGTGATAGAAGATTGCTTGTCTATGAACACATGCCAAACCTCTCTCTTGATACCCATTTATTTCACAATGACGCTACAGTCTTGAAATGGAGCATAAGGTATCAAATTGCTCTTGGAGTTGCTAGAGGACTAGCTTACCTTCATGATAGTTGCCAGGATTGCATTATACACTGTGACATTAAACCAGAGAACATACTTCTTGATGCATCATTTGTTCCAAAAATCGCAGATTTTGGGATGGCAAAGTTTCTGGGAAGGGAGTTTACTCAAGTTCTCACTACAATGCGAGGAACTATAGGGTATCTTGCACCTGAGTGGATTAGTGGTACAGTTATTACATCAAAGGTTGATGTCTACAGCTATGGAATGGTTTTGCTGGAAATCATCTCAGGAACGAGGAACTCAAGCAAAGAATTTGCAACTCGTGATGACTATGAATATTTCCCTCTGTTAGTGGCACATAAGCTGCTGGATGGTAATGCTGGGAGTTTGGTGGACCAAAATTTACATGGCGATGTTGATTTGGAGCAGGTAGAAAGAGCTTTCAGGGTTGCATGCTGGTGTATTCAAGATAATGAGCTTGATCGACCTACAATGAGTGAAGTTGTTCAATATCTCGAAGGTCTTCTTGAAGTTGGCATACCCCCAGTGCCACGACTACTTCAAGCTATTGCAGGCAACCCATATTCAAATTGA
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| Protein seq | MALPITVLFLLFTLHIPASCKVTDTISAGETLAGNDILVSSNGKFALGFFPTSSKSSHNASNWYLGIWFNQVPKLTPAWVANGDEPVTGPTSPEATISGDGNLVILDQATKSIFWSTQADITANTTMVKLLDNGNLVLQNTSNSSVVLWQSFDYPTNTHLAGAKLGRNKVTGLNRRLVSRKNSVDPASGMYSYELTDNNGSTRFILAALNSSIPYWSSGEWNGHYFGSIPEMTGQRLIDFTFVNNDEEVYFTYTLLDNATIMRFMLDISGQTKIFLWVEHVQDWVPTYTNPKQCDVYGICGAFTVCEESKLPICKCMKGFSVRSPNDWELDDRTGGCVRNTPLDCGINRNTSMQDRFHPMPCVGLPSNGQIIEDVTSAGGCAQICLSNCTCTAYYYGNTGCSVWNDELINVKQLQCGDIANTDGAILYLRLAAKEVQSIKSSGRSIFIGVAITASVASFALALFLIAKIPRNKSWLLGHRRKNFHSGSGVIAFRYADLQHATKNFSDKLGAGGFGSVFKGLLNESTVIAVKRLDGARQGEKQFRAEVGSIGIIQHINLVKLIGFCCEGDRRLLVYEHMPNLSLDTHLFHNDATVLKWSIRYQIALGVARGLAYLHDSCQDCIIHCDIKPENILLDASFVPKIADFGMAKFLGREFTQVLTTMRGTIGYLAPEWISGTVITSKVDVYSYGMVLLEIISGTRNSSKEFATRDDYEYFPLLVAHKLLDGNAGSLVDQNLHGDVDLEQVERAFRVACWCIQDNELDRPTMSEVVQYLEGLLEVGIPPVPRLLQAIAGNPYSN |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0420600 | Os04t0420600-00 | Chr04 | 20790084 | 20792816 | + | irgsp1_rep | ||
| CDS seq | ATGGCTCTTCCCATCACTGTCCTGTTCCTCCTCTTCACACTGCACATTCCTGCATCCTGCAAGGTGACAGACACCATCTCAGCTGGGGAGACACTCGCCGGCAATGACATACTTGTCTCCAGCAACGGCAAGTTTGCGCTTGGCTTCTTCCCAACCAGCAGTAAGTCCTCCCACAATGCTTCAAACTGGTACCTGGGGATATGGTTCAACCAGGTGCCAAAGCTCACTCCAGCATGGGTTGCCAATGGAGATGAGCCTGTCACTGGCCCCACTTCGCCGGAGGCCACAATCTCCGGTGACGGAAACCTTGTCATCTTAGATCAGGCCACAAAGTCCATCTTCTGGTCAACCCAAGCTGACATCACAGCAAACACAACAATGGTCAAGCTATTGGATAATGGCAACCTTGTCCTGCAGAACACCTCAAATTCTTCGGTTGTCTTGTGGCAAAGCTTTGACTACCCAACAAATACCCATCTCGCCGGTGCGAAGCTAGGCCGGAACAAGGTCACTGGCTTAAACCGCCGTCTTGTTTCCAGGAAAAACTCTGTAGACCCAGCTTCTGGCATGTACAGTTACGAGTTAACTGACAACAATGGTTCTACCAGGTTCATCCTTGCAGCTCTCAACTCCTCTATACCATATTGGTCTAGTGGAGAATGGAACGGACATTACTTTGGTTCCATACCAGAGATGACAGGTCAACGCTTAATTGATTTTACTTTTGTCAACAATGATGAAGAAGTGTACTTCACATATACCTTACTAGATAACGCAACGATCATGCGTTTTATGCTGGACATCTCTGGTCAGACCAAGATATTTTTGTGGGTGGAGCATGTGCAAGATTGGGTACCAACCTACACCAACCCAAAGCAGTGTGATGTGTATGGCATTTGTGGAGCTTTCACAGTCTGCGAAGAGAGCAAGCTTCCTATCTGCAAGTGTATGAAGGGCTTCTCTGTACGATCACCCAATGACTGGGAGCTAGATGATCGAACAGGCGGCTGTGTGAGAAATACTCCATTAGACTGTGGTATAAACAGAAACACCAGTATGCAAGACAGGTTCCACCCTATGCCGTGTGTTGGATTACCCAGTAATGGCCAAATCATAGAAGATGTTACAAGTGCAGGTGGATGTGCACAAATTTGCCTGAGCAACTGCACTTGCACAGCATATTACTATGGTAATACTGGATGCTCTGTTTGGAATGATGAATTGATTAATGTGAAACAGCTACAATGTGGTGATATTGCTAATACTGATGGAGCAATTCTTTACCTTCGCCTTGCTGCCAAAGAGGTGCAAAGTATAAAAAGCAGTGGACGATCAATATTCATTGGCGTTGCCATCACTGCAAGTGTTGCTTCCTTTGCTTTGGCACTCTTCTTGATAGCGAAGATCCCAAGGAACAAGAGTTGGCTGCTTGGTCACAGAAGAAAGAATTTTCATAGTGGTAGTGGAGTTATTGCATTTAGATATGCTGATCTGCAACATGCAACAAAAAACTTTTCAGATAAGCTAGGGGCAGGTGGTTTTGGCTCAGTATTCAAAGGGCTTCTTAATGAGTCTACTGTCATAGCAGTAAAAAGGCTTGATGGTGCTCGTCAAGGAGAGAAGCAATTCAGAGCTGAAGTAGGATCAATTGGAATCATCCAACACATCAATTTAGTTAAACTAATTGGTTTCTGTTGTGAGGGTGATAGAAGATTGCTTGTCTATGAACACATGCCAAACCTCTCTCTTGATACCCATTTATTTCACAATGACGCTACAGTCTTGAAATGGAGCATAAGGTATCAAATTGCTCTTGGAGTTGCTAGAGGACTAGCTTACCTTCATGATAGTTGCCAGGATTGCATTATACACTGTGACATTAAACCAGAGAACATACTTCTTGATGCATCATTTGTTCCAAAAATCGCAGATTTTGGGATGGCAAAGTTTCTGGGAAGGGAGTTTACTCAAGTTCTCACTACAATGCGAGGAACTATAGGGTATCTTGCACCTGAGTGGATTAGTGGTACAGTTATTACATCAAAGGTTGATGTCTACAGCTATGGAATGGTTTTGCTGGAAATCATCTCAGGAACGAGGAACTCAAGCAAAGAATTTGCAACTCGTGATGACTATGAATATTTCCCTCTGTTAGTGGCACATAAGCTGCTGGATGGTAATGCTGGGAGTTTGGTGGACCAAAATTTACATGGCGATGTTGATTTGGAGCAGGTAGAAAGAGCTTTCAGGGTTGCATGCTGGTGTATTCAAGATAATGAGCTTGATCGACCTACAATGAGTGAAGTTGTTCAATATCTCGAAGGTCTTCTTGAAGTTGGCATACCCCCAGTGCCACGACTACTTCAAGCTATTGCAGGCAACCCATATTCAAATTGA
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| Protein seq | MALPITVLFLLFTLHIPASCKVTDTISAGETLAGNDILVSSNGKFALGFFPTSSKSSHNASNWYLGIWFNQVPKLTPAWVANGDEPVTGPTSPEATISGDGNLVILDQATKSIFWSTQADITANTTMVKLLDNGNLVLQNTSNSSVVLWQSFDYPTNTHLAGAKLGRNKVTGLNRRLVSRKNSVDPASGMYSYELTDNNGSTRFILAALNSSIPYWSSGEWNGHYFGSIPEMTGQRLIDFTFVNNDEEVYFTYTLLDNATIMRFMLDISGQTKIFLWVEHVQDWVPTYTNPKQCDVYGICGAFTVCEESKLPICKCMKGFSVRSPNDWELDDRTGGCVRNTPLDCGINRNTSMQDRFHPMPCVGLPSNGQIIEDVTSAGGCAQICLSNCTCTAYYYGNTGCSVWNDELINVKQLQCGDIANTDGAILYLRLAAKEVQSIKSSGRSIFIGVAITASVASFALALFLIAKIPRNKSWLLGHRRKNFHSGSGVIAFRYADLQHATKNFSDKLGAGGFGSVFKGLLNESTVIAVKRLDGARQGEKQFRAEVGSIGIIQHINLVKLIGFCCEGDRRLLVYEHMPNLSLDTHLFHNDATVLKWSIRYQIALGVARGLAYLHDSCQDCIIHCDIKPENILLDASFVPKIADFGMAKFLGREFTQVLTTMRGTIGYLAPEWISGTVITSKVDVYSYGMVLLEIISGTRNSSKEFATRDDYEYFPLLVAHKLLDGNAGSLVDQNLHGDVDLEQVERAFRVACWCIQDNELDRPTMSEVVQYLEGLLEVGIPPVPRLLQAIAGNPYSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0420600 | RBH | 0.160113 | 0.198303 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34330 | RBH | 0.080739 | 0.140275 | 0.065356 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0594100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013120 | RBH | 0.040554 | 0.0 | 0.224593 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013940 | RBH | 0.178881 | 0.000000 | 0.182299 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013670 | RBH | 0.195415 | 0.000000 | 1.558374 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013320 | RBH | 0.019342 | 0.033247 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0013610 | RBH | 4.982869 | 1.540870 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0328900 | RBH | 0.1864365 | 2.436765 | 0.0342425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012520 | SBH | 0.081596 | 0.047716 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0326200 | RBH | 0.332272 | 0.292885 | 0.241672 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013120 | SBH | 0.073935 | 0.018073 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0012760 | RBH | 0.453549 | 3.747638 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0012770 | RBH | 0.491388 | 2.564442 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013370 | RBH | 0.0 | 0.025393 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013520 | RBH | 0.101624 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012670 | SBH | 0.284199 | 0.643363 | 0.235737 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012660 | SBH | 0.428041 | 1.303368 | 1.550173 |
