Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0515300 | OGI:01013090 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:18229321-18233091 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATGCTTCTACTGCTCCTCTTCGCTCTCACGCTAGGCCATGGGGCCAGATCGGCGGCGCCACTGCCGCGGCGTGGCACATCGCTGCGAGCTCAAGTGGCGGCCCTTCTCCACTGGAAGTCCACCTTGAAGGGCTTCTCACAACACCAGCTGGGAACATGGAGGCACGATATCCACCCGTGCAACTGGACTGGCATCACCTGCGGCGACGTTCCATGGCGCCAGCGACGACATGGAAGAACCACGGCAAGAAATGCCATCACGGGGATCGCCCTCCCGGGTGCCCATCTTGTGGGAGGGCTGGACACCCTGAGCTTCAGGTCCTTCCCTTATCTGGCCAGCCTCGACCTCAGCGACAATGGCCATCTGTCGGGTACGATCCCTCCTGGCATAAGTTCTCTGTTAATGCTTTCCAGTCTCAACCTGTCCAGCAATCAGCTTACCGGAAATATACCTCCATCCATTGGTGACCTTGGGAGGATTTCCTCAATTGATCTGTCGTACAATAATCTGACTGGGGAAATCCCTCCTGCGTTGGGTAACCTTACAAAGCTTACTTATCTTTCTCTCCTTGGCAATAAGCTGTCCGGTAACATCCCATGGCAGCTTGGGAAGCTTCATGACATCTCGTTTATAGATTTGAGCCTCAATCTTCTTGTTGGGCCGATACTTTCTCTATTTGGAAACCTCACAAAACTCACCTCTTTGTTCCTCGTCGGTAATCATCTATCTGGACCTATACCTGACGAGCTAGGTGAAATACAAACGCTTCAATATCTAGATCTGCAGCAAAACAACTTGAACGGCTCAATTACATCCACCTTGGGAAATCTTACAATGCTCAAGATCTTGTACATATATCTGAACCAACATACTGGTACTATCCCTCAAGTGTTTGGGATGCTGTCAAGTTTGGTTGAGTTGGACTTGTCCGAGAACCATTTGACCGGCTCAATTCCCTCAAGTGTTGGAAATCTTACTTCGTCAGTCTACTTTTCTCTTTGGGGTAATCACATAACTGGGTCAATCCCTCAGGAGATTGGAAATCTTGTGAATCTCCAACAGCTCGACCTCTCAGTAAATTTCATAACTGGACCAGTGCCATCAACTATAGGGAACATGTCTTCCCTCAACTATATATTAATAAATAGCAATAATCTCTCTGCACCAATCCCAGAAGAGTTTGGGAATCTGGCAAGTTTGATATCATTTGCATCCTATGAAAACCAATTGTCTGGTCCAATCCCTCCGAGTTTGGGAAAATTGGAGAGCGTGAGCGAAATTCTACTGTTCAGCAACCAGCTATCAGGTCAATTGCCTCCAGCACTCTTCAACCTCACTAATTTAATTGACATCGAATTAGACAAGAACTACTTGGTTGGCCCGTTGCCTGATTTGTGTCGGGGTAAAAAGCTAGAGATTTTACATCTTTCTCATAACAATTTGAATGGTTCGATGCCAAAGACTTTGAGGGATTGCATTTCCCTGCGATCCCTCGGCATTAGCTACAACAAAATGGATGGAGACATAACTGATGCATTAGGAGTGTACCCCCATCTATGGCGGTTACGTTTAGCGTCAAACAAATTGGTTGGCCGGCTTTCACCAAATTTGTGATCATGTCAGAATTTGACAGCACTTAGTTTTGCAGACAATATGATAAAAGGCGGTATACCTTCTGAGCTTGGGAATCTAAAAAATCTTGTAAAGCTCAGTCTGTCCACTAATAGGTTGACTGGGGAGATACCACCTGAAATTGGCAAGTTAGTCAATCTAAATTTGATAGATTTAAGAAACAATCAACTTTCTGGGAAGGTCCCAAATCAAATTGGCCAACTTAAAAGCCTTGAGATTCTTGATTTCTCAAGCAATCAGCTGAGTGGAGCTATACCAGATGACCTTGGTAATTGTTTTAAGCTGCAGTCTTTGAAAATGAGCAACAACAGCTTGAATGGGAGTATACCAAGTACATTGGGCCATTTTCTTTCTCTACAAAGCATGCTTGATCTTAGCCAGAACAATCTTAGTGGACCAATACCATCCGAACTTGGCATGCTCGAGATGCTCATGTATGTAAACTTGTCACACAATCAATTTAGTGGTGCTATCCCTGGCTCAATTGCAAGTATGCAAAGTCTATCAGTGTTTGATGTGTCATACAATGTCCTCGAAGGTCCTATTCCTAGACCGCTCCACAATGCATCGGCAAAATGGTTTGTCCACAACAAAGGTCTTTGTGGAGAACTTGCTGGCCTATCACATTGTTATTTGCCTCCTTACCACAGAAAAACCAGACTAAAGTTGATAGTTGAAGTCAGTGCTCCTGTATTCTTAGCTATTATTTCTATTGTGGCAACTGTTTTTCTTCTTTCAGTTTGCCGAAAAAAACTCTCCCAAGAAAATAATAATGTGGTGAAAAAAAATGATATTTTCTCTGTATGGAGTTTTGATGGTAAAATGGCATTTGATGATATAATTAGCGCAACCGACAATTTTGATGAGAAGCATTGCATTGGAGAGGGAGCATATGGTCGTGTATACAAAGCAGAACTTGAAGATAAGCAAGTGTTTGCGGTGAAGAAACTCCATCCAGATGATGAAGATACTGTACACGATGAAGAGAGATTTCAGATTGAGATTGAAATGTTGGCAAAAATCCGACATCGTAGCATAGTGAAGTTGTATGGATTCTGTTGTCATCCAAGGTACAGGTTTCTCGTTTGTCAATACATAGAGAGAGGAAACCTAGCTTCTATCTTAAATAATGAAGAAGTAGCCATCGAGTTCTATTGGATGAGAAGGACAACCCTCATAAGAGATGTAGCTCAAGCAATTACTTATCTTCATGATTGTCAGCCTCCCATAATTCATCGTGACATTACGAGCGGAAACATCTTACTGGATGTTGATTATAGAGCATATGTCTCGGATTTTGGCATTGCAAGAATTCTAAAACCGGATTCATCAAATTGGAGTGCATTAGCTGGGACCTATGGCTATATAGCACCTGGTATGTGTATACAGTACAGTACAATATTCCATATATACTAAAACTTGTTAACAATATAATATTGCTTTGCACAAACATATATTCCTGACTTTTATATATGTTTCCATGTTGGTTGTAGAATTGTCCTACACCTCCTTAGTCACGGAGAAATGTGACGTATATAGCTTCGGTGTTGTGGTGCTTGAGGTGCTGATGGGCAAACATCCTGGAGATATCCAAAGTTCTATTACTACTTCTAAATATGATGATTTTCTTGATGAAATCTTGGATAAACGTCTTCCAGTACCTGCAGATGATGAAGCAGACGACGTGAATAGGTGTCTCTCCGTGGCGTTTGACTGCCTACTTCCATCGCCGCAAGAGAGGCCAACCATGTGTCAAGTTTATCAACGACTTGCCATCTGAAGTTACCTTGCTTATCTTAAAATCTTTTTTATAATAATGAGAGGCTCCCTTAGGAGCCACCACTCTTAAGGATAACAAATATGTTCATGGACTCTCATGTAAAATAATACTATGTGCAATGCGCCAATGCTAGGTGGGTATTCAACCAGGGTGGTTTCATCCTGTGTGGTATTTGATGCGGCTATCTGGAAATTTTAGTAAACAATACTAAAACATAGAAGTGTGTGTCATACTGATCTGATCACTTCTACTCCGTTCAATATTGTAAGTTGTTTTGATTTTGTTCTGAATCTAACTTCTATAAATCTGACCAAATTTATGGAAATCTGAACCAAGTTAGTTTTATTTTTTTATGGTT
More
|
||||||||||
| CDS seq | ATGCTTCTACTGCTCCTCTTCGCTCTCACGCTAGGCCATGGGGCCAGATCGGCGGCGCCACTGCCGCGGCGTGGCACATCGCTGCGAGCTCAAGTGGCGGCCCTTCTCCACTGGAAGTCCACCTTGAAGGGCTTCTCACAACACCAGCTGGGAACATGGAGGCACGATATCCACCCGTGCAACTGGACTGGCATCACCTGCGGCGACGTTCCATGGCGCCAGCGACGACATGGAAGAACCACGGCAAGAAATGCCATCACGGGGATCGCCCTCCCGGGTGCCCATCTTGTGGGAGGGCTGGACACCCTGAGCTTCAGGTCCTTCCCTTATCTGGCCAGCCTCGACCTCAGCGACAATGGCCATCTGTCGGGTACGATCCCTCCTGGCATAAGTTCTCTGTTAATGCTTTCCAGTCTCAACCTGTCCAGCAATCAGCTTACCGGAAATATACCTCCATCCATTGGTGACCTTGGGAGGATTTCCTCAATTGATCTGTCGTACAATAATCTGACTGGGGAAATCCCTCCTGCGTTGGGTAACCTTACAAAGCTTACTTATCTTTCTCTCCTTGGCAATAAGCTGTCCGGTAACATCCCATGGCAGCTTGGGAAGCTTCATGACATCTCGTTTATAGATTTGAGCCTCAATCTTCTTGTTGGGCCGATACTTTCTCTATTTGGAAACCTCACAAAACTCACCTCTTTGTTCCTCGTCGGTAATCATCTATCTGGACCTATACCTGACGAGCTAGGTGAAATACAAACGCTTCAATATCTAGATCTGCAGCAAAACAACTTGAACGGCTCAATTACATCCACCTTGGGAAATCTTACAATGCTCAAGATCTTGTACATATATCTGAACCAACATACTGGTACTATCCCTCAAGTGTTTGGGATGCTGTCAAGTTTGGTTGAGTTGGACTTGTCCGAGAACCATTTGACCGGCTCAATTCCCTCAAGTGTTGGAAATCTTACTTCGTCAGTCTACTTTTCTCTTTGGGGTAATCACATAACTGGGTCAATCCCTCAGGAGATTGGAAATCTTGTGAATCTCCAACAGCTCGACCTCTCAGTAAATTTCATAACTGGACCAGTGCCATCAACTATAGGGAACATGTCTTCCCTCAACTATATATTAATAAATAGCAATAATCTCTCTGCACCAATCCCAGAAGAGTTTGGGAATCTGGCAAGTTTGATATCATTTGCATCCTATGAAAACCAATTGTCTGGTCCAATCCCTCCGAGTTTGGGAAAATTGGAGAGCGTGAGCGAAATTCTACTGTTCAGCAACCAGCTATCAGGTCAATTGCCTCCAGCACTCTTCAACCTCACTAATTTAATTGACATCGAATTAGACAAGAACTACTTGGTTGGCCCGTTGCCTGATTTGTGTCGGGGTAAAAAGCTAGAGATTTTACATCTTTCTCATAACAATTTGAATGGTTCGATGCCAAAGACTTTGAGGGATTGCATTTCCCTGCGATCCCTCGGCATTAGCTACAACAAAATGGATGGAGACATAACTGATGCATTAGGAGTGTACCCCCATCTATGGCGGTTACGTTTAGCGTCAAACAAATTGGTTGGCCGGCTTTCACCAAATTTGTGA
More
|
||||||||||
| Protein seq | MLLLLLFALTLGHGARSAAPLPRRGTSLRAQVAALLHWKSTLKGFSQHQLGTWRHDIHPCNWTGITCGDVPWRQRRHGRTTARNAITGIALPGAHLVGGLDTLSFRSFPYLASLDLSDNGHLSGTIPPGISSLLMLSSLNLSSNQLTGNIPPSIGDLGRISSIDLSYNNLTGEIPPALGNLTKLTYLSLLGNKLSGNIPWQLGKLHDISFIDLSLNLLVGPILSLFGNLTKLTSLFLVGNHLSGPIPDELGEIQTLQYLDLQQNNLNGSITSTLGNLTMLKILYIYLNQHTGTIPQVFGMLSSLVELDLSENHLTGSIPSSVGNLTSSVYFSLWGNHITGSIPQEIGNLVNLQQLDLSVNFITGPVPSTIGNMSSLNYILINSNNLSAPIPEEFGNLASLISFASYENQLSGPIPPSLGKLESVSEILLFSNQLSGQLPPALFNLTNLIDIELDKNYLVGPLPDLCRGKKLEILHLSHNNLNGSMPKTLRDCISLRSLGISYNKMDGDITDALGVYPHLWRLRLASNKLVGRLSPNL |
||||||||||
| Function | Probable leucine-rich repeat receptor-like protein kinase At1g35710 [UniProtKB/Swiss-Prot:Q9LP24] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0515300 | Os01t0515300-01 | Chr01 | 18229321 | 18233091 | + | irgsp1_rep | ||
| CDS seq | ATGCTTCTACTGCTCCTCTTCGCTCTCACGCTAGGCCATGGGGCCAGATCGGCGGCGCCACTGCCGCGGCGTGGCACATCGCTGCGAGCTCAAGTGGCGGCCCTTCTCCACTGGAAGTCCACCTTGAAGGGCTTCTCACAACACCAGCTGGGAACATGGAGGCACGATATCCACCCGTGCAACTGGACTGGCATCACCTGCGGCGACGTTCCATGGCGCCAGCGACGACATGGAAGAACCACGGCAAGAAATGCCATCACGGGGATCGCCCTCCCGGGTGCCCATCTTGTGGGAGGGCTGGACACCCTGAGCTTCAGGTCCTTCCCTTATCTGGCCAGCCTCGACCTCAGCGACAATGGCCATCTGTCGGGTACGATCCCTCCTGGCATAAGTTCTCTGTTAATGCTTTCCAGTCTCAACCTGTCCAGCAATCAGCTTACCGGAAATATACCTCCATCCATTGGTGACCTTGGGAGGATTTCCTCAATTGATCTGTCGTACAATAATCTGACTGGGGAAATCCCTCCTGCGTTGGGTAACCTTACAAAGCTTACTTATCTTTCTCTCCTTGGCAATAAGCTGTCCGGTAACATCCCATGGCAGCTTGGGAAGCTTCATGACATCTCGTTTATAGATTTGAGCCTCAATCTTCTTGTTGGGCCGATACTTTCTCTATTTGGAAACCTCACAAAACTCACCTCTTTGTTCCTCGTCGGTAATCATCTATCTGGACCTATACCTGACGAGCTAGGTGAAATACAAACGCTTCAATATCTAGATCTGCAGCAAAACAACTTGAACGGCTCAATTACATCCACCTTGGGAAATCTTACAATGCTCAAGATCTTGTACATATATCTGAACCAACATACTGGTACTATCCCTCAAGTGTTTGGGATGCTGTCAAGTTTGGTTGAGTTGGACTTGTCCGAGAACCATTTGACCGGCTCAATTCCCTCAAGTGTTGGAAATCTTACTTCGTCAGTCTACTTTTCTCTTTGGGGTAATCACATAACTGGGTCAATCCCTCAGGAGATTGGAAATCTTGTGAATCTCCAACAGCTCGACCTCTCAGTAAATTTCATAACTGGACCAGTGCCATCAACTATAGGGAACATGTCTTCCCTCAACTATATATTAATAAATAGCAATAATCTCTCTGCACCAATCCCAGAAGAGTTTGGGAATCTGGCAAGTTTGATATCATTTGCATCCTATGAAAACCAATTGTCTGGTCCAATCCCTCCGAGTTTGGGAAAATTGGAGAGCGTGAGCGAAATTCTACTGTTCAGCAACCAGCTATCAGGTCAATTGCCTCCAGCACTCTTCAACCTCACTAATTTAATTGACATCGAATTAGACAAGAACTACTTGGTTGGCCCGTTGCCTGATTTGTGTCGGGGTAAAAAGCTAGAGATTTTACATCTTTCTCATAACAATTTGAATGGTTCGATGCCAAAGACTTTGAGGGATTGCATTTCCCTGCGATCCCTCGGCATTAGCTACAACAAAATGGATGGAGACATAACTGATGCATTAGGAGTGTACCCCCATCTATGGCGGTTACGTTTAGCGTCAAACAAATTGGTTGGCCGGCTTTCACCAAATTTGTGA
More
|
|||||||
| Protein seq | MLLLLLFALTLGHGARSAAPLPRRGTSLRAQVAALLHWKSTLKGFSQHQLGTWRHDIHPCNWTGITCGDVPWRQRRHGRTTARNAITGIALPGAHLVGGLDTLSFRSFPYLASLDLSDNGHLSGTIPPGISSLLMLSSLNLSSNQLTGNIPPSIGDLGRISSIDLSYNNLTGEIPPALGNLTKLTYLSLLGNKLSGNIPWQLGKLHDISFIDLSLNLLVGPILSLFGNLTKLTSLFLVGNHLSGPIPDELGEIQTLQYLDLQQNNLNGSITSTLGNLTMLKILYIYLNQHTGTIPQVFGMLSSLVELDLSENHLTGSIPSSVGNLTSSVYFSLWGNHITGSIPQEIGNLVNLQQLDLSVNFITGPVPSTIGNMSSLNYILINSNNLSAPIPEEFGNLASLISFASYENQLSGPIPPSLGKLESVSEILLFSNQLSGQLPPALFNLTNLIDIELDKNYLVGPLPDLCRGKKLEILHLSHNNLNGSMPKTLRDCISLRSLGISYNKMDGDITDALGVYPHLWRLRLASNKLVGRLSPNL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0515300 | RBH | 0.401003 | 0.342699 | 1.187802 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g33950 | SBH | 0.0 | 0.0 | 0.071246 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0274300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003890 | SBH | 0.074925 | 0.288941 | 0.370606 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0024050 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024360 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023750 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0036380 | SBH | 22.455767 | 178.846283 | 72.693260 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0312100 | RBH | 0.2887945 | 0.094447 | 0.15772 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0012130 | SBH | 1.553266 | 1.584764 | 2.542441 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0308900 | RBH | 0.777167 | 0.121823 | 3.55387 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0036270 | SBH | 0.721124 | 2.489517 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003620 | SBH | 0.032768 | 0.332644 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0036560 | SBH | 11.130883 | 163.505447 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0036650 | SBH | 2.622669 | 14.557862 | 11.032617 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003670 | SBH | 0.013014 | 0.152850 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G012280 | SBH | 2.352120 | 10.527529 | 8.430974 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0012130 | SBH | 6.591588 | 14.994800 | 19.610842 |
