Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0515300 | OGI:01013090 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:18229321-18233091 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATGCTTCTACTGCTCCTCTTCGCTCTCACGCTAGGCCATGGGGCCAGATCGGCGGCGCCACTGCCGCGGCGTGGCACATCGCTGCGAGCTCAAGTGGCGGCCCTTCTCCACTGGAAGTCCACCTTGAAGGGCTTCTCACAACACCAGCTGGGAACATGGAGGCACGATATCCACCCGTGCAACTGGACTGGCATCACCTGCGGCGACGTTCCATGGCGCCAGCGACGACATGGAAGAACCACGGCAAGAAATGCCATCACGGGGATCGCCCTCCCGGGTGCCCATCTTGTGGGAGGGCTGGACACCCTGAGCTTCAGGTCCTTCCCTTATCTGGCCAGCCTCGACCTCAGCGACAATGGCCATCTGTCGGGTACGATCCCTCCTGGCATAAGTTCTCTGTTAATGCTTTCCAGTCTCAACCTGTCCAGCAATCAGCTTACCGGAAATATACCTCCATCCATTGGTGACCTTGGGAGGATTTCCTCAATTGATCTGTCGTACAATAATCTGACTGGGGAAATCCCTCCTGCGTTGGGTAACCTTACAAAGCTTACTTATCTTTCTCTCCTTGGCAATAAGCTGTCCGGTAACATCCCATGGCAGCTTGGGAAGCTTCATGACATCTCGTTTATAGATTTGAGCCTCAATCTTCTTGTTGGGCCGATACTTTCTCTATTTGGAAACCTCACAAAACTCACCTCTTTGTTCCTCGTCGGTAATCATCTATCTGGACCTATACCTGACGAGCTAGGTGAAATACAAACGCTTCAATATCTAGATCTGCAGCAAAACAACTTGAACGGCTCAATTACATCCACCTTGGGAAATCTTACAATGCTCAAGATCTTGTACATATATCTGAACCAACATACTGGTACTATCCCTCAAGTGTTTGGGATGCTGTCAAGTTTGGTTGAGTTGGACTTGTCCGAGAACCATTTGACCGGCTCAATTCCCTCAAGTGTTGGAAATCTTACTTCGTCAGTCTACTTTTCTCTTTGGGGTAATCACATAACTGGGTCAATCCCTCAGGAGATTGGAAATCTTGTGAATCTCCAACAGCTCGACCTCTCAGTAAATTTCATAACTGGACCAGTGCCATCAACTATAGGGAACATGTCTTCCCTCAACTATATATTAATAAATAGCAATAATCTCTCTGCACCAATCCCAGAAGAGTTTGGGAATCTGGCAAGTTTGATATCATTTGCATCCTATGAAAACCAATTGTCTGGTCCAATCCCTCCGAGTTTGGGAAAATTGGAGAGCGTGAGCGAAATTCTACTGTTCAGCAACCAGCTATCAGGTCAATTGCCTCCAGCACTCTTCAACCTCACTAATTTAATTGACATCGAATTAGACAAGAACTACTTGGTTGGCCCGTTGCCTGATTTGTGTCGGGGTAAAAAGCTAGAGATTTTACATCTTTCTCATAACAATTTGAATGGTTCGATGCCAAAGACTTTGAGGGATTGCATTTCCCTGCGATCCCTCGGCATTAGCTACAACAAAATGGATGGAGACATAACTGATGCATTAGGAGTGTACCCCCATCTATGGCGGTTACGTTTAGCGTCAAACAAATTGGTTGGCCGGCTTTCACCAAATTTGTGATCATGTCAGAATTTGACAGCACTTAGTTTTGCAGACAATATGATAAAAGGCGGTATACCTTCTGAGCTTGGGAATCTAAAAAATCTTGTAAAGCTCAGTCTGTCCACTAATAGGTTGACTGGGGAGATACCACCTGAAATTGGCAAGTTAGTCAATCTAAATTTGATAGATTTAAGAAACAATCAACTTTCTGGGAAGGTCCCAAATCAAATTGGCCAACTTAAAAGCCTTGAGATTCTTGATTTCTCAAGCAATCAGCTGAGTGGAGCTATACCAGATGACCTTGGTAATTGTTTTAAGCTGCAGTCTTTGAAAATGAGCAACAACAGCTTGAATGGGAGTATACCAAGTACATTGGGCCATTTTCTTTCTCTACAAAGCATGCTTGATCTTAGCCAGAACAATCTTAGTGGACCAATACCATCCGAACTTGGCATGCTCGAGATGCTCATGTATGTAAACTTGTCACACAATCAATTTAGTGGTGCTATCCCTGGCTCAATTGCAAGTATGCAAAGTCTATCAGTGTTTGATGTGTCATACAATGTCCTCGAAGGTCCTATTCCTAGACCGCTCCACAATGCATCGGCAAAATGGTTTGTCCACAACAAAGGTCTTTGTGGAGAACTTGCTGGCCTATCACATTGTTATTTGCCTCCTTACCACAGAAAAACCAGACTAAAGTTGATAGTTGAAGTCAGTGCTCCTGTATTCTTAGCTATTATTTCTATTGTGGCAACTGTTTTTCTTCTTTCAGTTTGCCGAAAAAAACTCTCCCAAGAAAATAATAATGTGGTGAAAAAAAATGATATTTTCTCTGTATGGAGTTTTGATGGTAAAATGGCATTTGATGATATAATTAGCGCAACCGACAATTTTGATGAGAAGCATTGCATTGGAGAGGGAGCATATGGTCGTGTATACAAAGCAGAACTTGAAGATAAGCAAGTGTTTGCGGTGAAGAAACTCCATCCAGATGATGAAGATACTGTACACGATGAAGAGAGATTTCAGATTGAGATTGAAATGTTGGCAAAAATCCGACATCGTAGCATAGTGAAGTTGTATGGATTCTGTTGTCATCCAAGGTACAGGTTTCTCGTTTGTCAATACATAGAGAGAGGAAACCTAGCTTCTATCTTAAATAATGAAGAAGTAGCCATCGAGTTCTATTGGATGAGAAGGACAACCCTCATAAGAGATGTAGCTCAAGCAATTACTTATCTTCATGATTGTCAGCCTCCCATAATTCATCGTGACATTACGAGCGGAAACATCTTACTGGATGTTGATTATAGAGCATATGTCTCGGATTTTGGCATTGCAAGAATTCTAAAACCGGATTCATCAAATTGGAGTGCATTAGCTGGGACCTATGGCTATATAGCACCTGGTATGTGTATACAGTACAGTACAATATTCCATATATACTAAAACTTGTTAACAATATAATATTGCTTTGCACAAACATATATTCCTGACTTTTATATATGTTTCCATGTTGGTTGTAGAATTGTCCTACACCTCCTTAGTCACGGAGAAATGTGACGTATATAGCTTCGGTGTTGTGGTGCTTGAGGTGCTGATGGGCAAACATCCTGGAGATATCCAAAGTTCTATTACTACTTCTAAATATGATGATTTTCTTGATGAAATCTTGGATAAACGTCTTCCAGTACCTGCAGATGATGAAGCAGACGACGTGAATAGGTGTCTCTCCGTGGCGTTTGACTGCCTACTTCCATCGCCGCAAGAGAGGCCAACCATGTGTCAAGTTTATCAACGACTTGCCATCTGAAGTTACCTTGCTTATCTTAAAATCTTTTTTATAATAATGAGAGGCTCCCTTAGGAGCCACCACTCTTAAGGATAACAAATATGTTCATGGACTCTCATGTAAAATAATACTATGTGCAATGCGCCAATGCTAGGTGGGTATTCAACCAGGGTGGTTTCATCCTGTGTGGTATTTGATGCGGCTATCTGGAAATTTTAGTAAACAATACTAAAACATAGAAGTGTGTGTCATACTGATCTGATCACTTCTACTCCGTTCAATATTGTAAGTTGTTTTGATTTTGTTCTGAATCTAACTTCTATAAATCTGACCAAATTTATGGAAATCTGAACCAAGTTAGTTTTATTTTTTTATGGTT
More
|
||||||||||
| CDS seq | ATGCTTCTACTGCTCCTCTTCGCTCTCACGCTAGGCCATGGGGCCAGATCGGCGGCGCCACTGCCGCGGCGTGGCACATCGCTGCGAGCTCAAGTGGCGGCCCTTCTCCACTGGAAGTCCACCTTGAAGGGCTTCTCACAACACCAGCTGGGAACATGGAGGCACGATATCCACCCGTGCAACTGGACTGGCATCACCTGCGGCGACGTTCCATGGCGCCAGCGACGACATGGAAGAACCACGGCAAGAAATGCCATCACGGGGATCGCCCTCCCGGGTGCCCATCTTGTGGGAGGGCTGGACACCCTGAGCTTCAGGTCCTTCCCTTATCTGGCCAGCCTCGACCTCAGCGACAATGGCCATCTGTCGGGTACGATCCCTCCTGGCATAAGTTCTCTGTTAATGCTTTCCAGTCTCAACCTGTCCAGCAATCAGCTTACCGGAAATATACCTCCATCCATTGGTGACCTTGGGAGGATTTCCTCAATTGATCTGTCGTACAATAATCTGACTGGGGAAATCCCTCCTGCGTTGGGTAACCTTACAAAGCTTACTTATCTTTCTCTCCTTGGCAATAAGCTGTCCGGTAACATCCCATGGCAGCTTGGGAAGCTTCATGACATCTCGTTTATAGATTTGAGCCTCAATCTTCTTGTTGGGCCGATACTTTCTCTATTTGGAAACCTCACAAAACTCACCTCTTTGTTCCTCGTCGGTAATCATCTATCTGGACCTATACCTGACGAGCTAGGTGAAATACAAACGCTTCAATATCTAGATCTGCAGCAAAACAACTTGAACGGCTCAATTACATCCACCTTGGGAAATCTTACAATGCTCAAGATCTTGTACATATATCTGAACCAACATACTGGTACTATCCCTCAAGTGTTTGGGATGCTGTCAAGTTTGGTTGAGTTGGACTTGTCCGAGAACCATTTGACCGGCTCAATTCCCTCAAGTGTTGGAAATCTTACTTCGTCAGTCTACTTTTCTCTTTGGGGTAATCACATAACTGGGTCAATCCCTCAGGAGATTGGAAATCTTGTGAATCTCCAACAGCTCGACCTCTCAGTAAATTTCATAACTGGACCAGTGCCATCAACTATAGGGAACATGTCTTCCCTCAACTATATATTAATAAATAGCAATAATCTCTCTGCACCAATCCCAGAAGAGTTTGGGAATCTGGCAAGTTTGATATCATTTGCATCCTATGAAAACCAATTGTCTGGTCCAATCCCTCCGAGTTTGGGAAAATTGGAGAGCGTGAGCGAAATTCTACTGTTCAGCAACCAGCTATCAGGTCAATTGCCTCCAGCACTCTTCAACCTCACTAATTTAATTGACATCGAATTAGACAAGAACTACTTGGTTGGCCCGTTGCCTGATTTGTGTCGGGGTAAAAAGCTAGAGATTTTACATCTTTCTCATAACAATTTGAATGGTTCGATGCCAAAGACTTTGAGGGATTGCATTTCCCTGCGATCCCTCGGCATTAGCTACAACAAAATGGATGGAGACATAACTGATGCATTAGGAGTGTACCCCCATCTATGGCGGTTACGTTTAGCGTCAAACAAATTGGTTGGCCGGCTTTCACCAAATTTGTGA
More
|
||||||||||
| Protein seq | MLLLLLFALTLGHGARSAAPLPRRGTSLRAQVAALLHWKSTLKGFSQHQLGTWRHDIHPCNWTGITCGDVPWRQRRHGRTTARNAITGIALPGAHLVGGLDTLSFRSFPYLASLDLSDNGHLSGTIPPGISSLLMLSSLNLSSNQLTGNIPPSIGDLGRISSIDLSYNNLTGEIPPALGNLTKLTYLSLLGNKLSGNIPWQLGKLHDISFIDLSLNLLVGPILSLFGNLTKLTSLFLVGNHLSGPIPDELGEIQTLQYLDLQQNNLNGSITSTLGNLTMLKILYIYLNQHTGTIPQVFGMLSSLVELDLSENHLTGSIPSSVGNLTSSVYFSLWGNHITGSIPQEIGNLVNLQQLDLSVNFITGPVPSTIGNMSSLNYILINSNNLSAPIPEEFGNLASLISFASYENQLSGPIPPSLGKLESVSEILLFSNQLSGQLPPALFNLTNLIDIELDKNYLVGPLPDLCRGKKLEILHLSHNNLNGSMPKTLRDCISLRSLGISYNKMDGDITDALGVYPHLWRLRLASNKLVGRLSPNL |
||||||||||
| Function | Probable leucine-rich repeat receptor-like protein kinase At1g35710 [UniProtKB/Swiss-Prot:Q9LP24] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0515300 | OsNip_01t0515300-01 | Chr01 | 18229321 | 18233091 | + | RAP2018-11-26 | ||
| CDS seq | ATGCTTCTACTGCTCCTCTTCGCTCTCACGCTAGGCCATGGGGCCAGATCGGCGGCGCCACTGCCGCGGCGTGGCACATCGCTGCGAGCTCAAGTGGCGGCCCTTCTCCACTGGAAGTCCACCTTGAAGGGCTTCTCACAACACCAGCTGGGAACATGGAGGCACGATATCCACCCGTGCAACTGGACTGGCATCACCTGCGGCGACGTTCCATGGCGCCAGCGACGACATGGAAGAACCACGGCAAGAAATGCCATCACGGGGATCGCCCTCCCGGGTGCCCATCTTGTGGGAGGGCTGGACACCCTGAGCTTCAGGTCCTTCCCTTATCTGGCCAGCCTCGACCTCAGCGACAATGGCCATCTGTCGGGTACGATCCCTCCTGGCATAAGTTCTCTGTTAATGCTTTCCAGTCTCAACCTGTCCAGCAATCAGCTTACCGGAAATATACCTCCATCCATTGGTGACCTTGGGAGGATTTCCTCAATTGATCTGTCGTACAATAATCTGACTGGGGAAATCCCTCCTGCGTTGGGTAACCTTACAAAGCTTACTTATCTTTCTCTCCTTGGCAATAAGCTGTCCGGTAACATCCCATGGCAGCTTGGGAAGCTTCATGACATCTCGTTTATAGATTTGAGCCTCAATCTTCTTGTTGGGCCGATACTTTCTCTATTTGGAAACCTCACAAAACTCACCTCTTTGTTCCTCGTCGGTAATCATCTATCTGGACCTATACCTGACGAGCTAGGTGAAATACAAACGCTTCAATATCTAGATCTGCAGCAAAACAACTTGAACGGCTCAATTACATCCACCTTGGGAAATCTTACAATGCTCAAGATCTTGTACATATATCTGAACCAACATACTGGTACTATCCCTCAAGTGTTTGGGATGCTGTCAAGTTTGGTTGAGTTGGACTTGTCCGAGAACCATTTGACCGGCTCAATTCCCTCAAGTGTTGGAAATCTTACTTCGTCAGTCTACTTTTCTCTTTGGGGTAATCACATAACTGGGTCAATCCCTCAGGAGATTGGAAATCTTGTGAATCTCCAACAGCTCGACCTCTCAGTAAATTTCATAACTGGACCAGTGCCATCAACTATAGGGAACATGTCTTCCCTCAACTATATATTAATAAATAGCAATAATCTCTCTGCACCAATCCCAGAAGAGTTTGGGAATCTGGCAAGTTTGATATCATTTGCATCCTATGAAAACCAATTGTCTGGTCCAATCCCTCCGAGTTTGGGAAAATTGGAGAGCGTGAGCGAAATTCTACTGTTCAGCAACCAGCTATCAGGTCAATTGCCTCCAGCACTCTTCAACCTCACTAATTTAATTGACATCGAATTAGACAAGAACTACTTGGTTGGCCCGTTGCCTGATTTGTGTCGGGGTAAAAAGCTAGAGATTTTACATCTTTCTCATAACAATTTGAATGGTTCGATGCCAAAGACTTTGAGGGATTGCATTTCCCTGCGATCCCTCGGCATTAGCTACAACAAAATGGATGGAGACATAACTGATGCATTAGGAGTGTACCCCCATCTATGGCGGTTACGTTTAGCGTCAAACAAATTGGTTGGCCGGCTTTCACCAAATTTGTGA
More
|
|||||||
| Protein seq | MLLLLLFALTLGHGARSAAPLPRRGTSLRAQVAALLHWKSTLKGFSQHQLGTWRHDIHPCNWTGITCGDVPWRQRRHGRTTARNAITGIALPGAHLVGGLDTLSFRSFPYLASLDLSDNGHLSGTIPPGISSLLMLSSLNLSSNQLTGNIPPSIGDLGRISSIDLSYNNLTGEIPPALGNLTKLTYLSLLGNKLSGNIPWQLGKLHDISFIDLSLNLLVGPILSLFGNLTKLTSLFLVGNHLSGPIPDELGEIQTLQYLDLQQNNLNGSITSTLGNLTMLKILYIYLNQHTGTIPQVFGMLSSLVELDLSENHLTGSIPSSVGNLTSSVYFSLWGNHITGSIPQEIGNLVNLQQLDLSVNFITGPVPSTIGNMSSLNYILINSNNLSAPIPEEFGNLASLISFASYENQLSGPIPPSLGKLESVSEILLFSNQLSGQLPPALFNLTNLIDIELDKNYLVGPLPDLCRGKKLEILHLSHNNLNGSMPKTLRDCISLRSLGISYNKMDGDITDALGVYPHLWRLRLASNKLVGRLSPNL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.401003 | 0.342699 | 1.187802 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0274300 | SBH | 3.931244 | 1.311950 | 2.740619 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g33950 | SBH | 0.0 | 0.0 | 0.071246 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0515300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003890 | SBH | 0.074925 | 0.288941 | 0.370606 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0024050 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024360 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023750 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023300 | SBH | 0.352614 | 0.000000 | 0.306255 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0312100 | RBH | 0.2887945 | 0.094447 | 0.15772 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0012130 | SBH | 1.553266 | 1.584764 | 2.542441 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0308900 | RBH | 0.777167 | 0.121823 | 3.55387 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0012140 | SBH | 0.391875 | 0.322095 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003620 | SBH | 0.032768 | 0.332644 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003760 | SBH | 0.332478 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0012280 | SBH | 2.698003 | 2.435953 | 4.170121 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003670 | SBH | 0.013014 | 0.152850 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G012280 | SBH | 2.352120 | 10.527529 | 8.430974 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0012130 | SBH | 6.591588 | 14.994800 | 19.610842 |
