Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0036560 | OGI:01013090 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:35558245-35562379 | ||||||||
| Gene Symbol | OsLRP, OsLRR1, LRR1 | ||||||||||
| DNA seq | aagcaggcaaagcacccaaaccaaacccaacccaacccaccgagcgagccatcccctccactacggccattctctcttcgcgaacgcgcacgcgacacgagtacacgcggagcaatacaaaaagtcgccctacaccaccagcgccagccgagcagcggcaggtgggggtggtggtgttgttgttgctgctgctgctactcttcttcccccttcctcgtgttcctcctcttcgcctcgtctctctgccctgcctcgtgcgcgtccagatccgggagggatgggggcgggggcgctgggggtggtggcgatggtggcggcggcggtggtggtggcgatggcgggggcgaactccgagggcgacgcgctgtcggcgctgcggcggagcctcagggaccccggcggggtgctgcagagctgggaccccacgctcgtcaacccctgcacctggttccacgtcacctgcgaccgcgacaaccgcgtcacgcgcctgtgagcgaccctctccctccctccctctcctcgcgttgcgctgtactgtacgcgtaggctcgagttgggtacttttgggtgtttgggggaactggatcgcgaggcaagccgtgtttggatgagcagtcgattccgttgcggccgcgttgatctagaagactagtagagctgtagttcgttgatgagaggagaaaccgatccacgaggcagcctttttagagttttactaggatgtactagattttgtaagaattttgctatggaacttgttgagattgtgtggctatgccgtgatatggctttacagttttactcaaaaggcaagtgcgctttttttattattggaccgaggaaaaattggaatggtcctgagcaaattgaaacatgacaagaatcagatagatgtatctcttttaatgagagtgttattaggtttcttggttggttgggcggttggggtgttatggttgaagaatttagatgtgagaggaatgataaggaccaaaggctagagaaaattttagcttcaattgcttacccatttgaactttcacagctttcatttcttctgtctgtcatttgtgttccaaagtccaaacctccaaaacacttactgtgcgtcagttcatgaagtaaaaaaacaatccactttactattaatctttttcagtgtggtcaaaatctatggccagttccttgtattgtatatgaagttgaattatttctcaagaacatcttcttctaattgttttcttggaatacatccctcttctaacagggatcttgggaatttgaacttatctggtcatctggtgcctgagcttggaaagttggatcatctgcaatatctgtaagcttttcttgcccatgtggtttgattctttgctagttcttctcaattattttgttttacttctaatatgacatagtttagtgattgaagtagataagataccatctcatgtccttcccaccgcactcctaaaacatgatattgtgacatggttttatacttttatgcatattctatggttgaacatttatgtaagatccattttcttttatctccaagatatctgtcaagttctattctcatacagtttgtgatgtctgagaatgatgtattgaagttttgtttagtttaatgtatgattgttagttattcgcataatttatattgatgcactttggtagtattaaccatcagcattggaacagggagctatacaagaataatattcaaggaacgatcccatcggaacttggtaatttgaagaatcttataagcttggacctgtacaagaacaacatttctgggactatacctccaacacttgggaaattaacgtcccttgtattcttgtaagtttgtgttattcaaatgatctcattgtaaaatagttctaagttctcacatgttagctattgatttcatgctgtatatgcacattctgcatacttcctccatttcaaactacaatgcctgtgtttttgcattcttacttcaaaataaatacgtgtatatcatataggtttattgatccatactctcttttatctttgctgcctcttcatcatttgcgagcaaacacctacacaaactatttctatcatggctattttctgatttaacttcgttagtccctgttcatgctttataagaaataagcgggaatgcatattgatgtctttaaaactttaccttcagcttgtttgaattttctggtggtttgttgacttatgcattctatctttctaacacattattatgctttgaaggcggctcaatggcaatcgcttgactgggccaatcccaagggaactggccggaatatctagtcttaaagttgtgtaagtacaattcctggtgctgagtgcttggctgcaaacaatcttgaatgtgataaattttacccccttgttctttcagtgatgtttcaagcaatgatctgtgtggaacaattcctacatcaggaccatttgagcacaTtcccctaagcaagtaagtttgactgcctttgtgatactattatgatttcttcagcagtattaaagtcattatcattttatattaaatttcaaaactaatggtagcccaaaacaaattctgacacaagtttgttagtgtcgtaatcaatacttccataaggtaaattaaactaggaatttaatgttggtggccaatatgaggatcctatactaaacatttcatgcccatagccccataagtaaggtttctttctgatccctgccatttcatcatcattacatcgtatttccttctgtatttcatattcatttgtacgtatattcaatgtttccttgataacaagttaacaaacaaaatactcgtgaggaattatttttcactcattactcattagtgttttggggaggcccttcccactgtggcaaatactttattattgttccattattctgattgactactttgtagtaatatagtgtatcatccctatcttctagttttttttaggatatggcctgtaatttgaaagggcacacgtgagatctatcattgtttattgggtctttctaggaataacttttagccaaatgcccttgtgttgcaagggacttgaaataacattacaaaatataaagtcaaaaagatttatacattgcttggaaaaaaatattttcaatcaaacatcaatccagaaatagcctagccacatacccaagcaatctgtttatctagagaatataccatcttacacattttggaggctggattgaattccattgtcgaaaaacatcttgaacacacgcattggcagactcaccatcaccaacacaatatagtagagagaggtatatcacagtatgaagcagctcacctagtggctctgcgttaaattcgagagcggtttaatagttgatccatccaatgcgcttgctttgcctccccttgtgcttgcatgtttctaggcaaccttctgagtattctgtatttctctattgataaagacacataggtaggatgtttacaagtctgtcttctgatctatatgagcaagtatatatagtcttagtttctgtagacttctgtcctgcgtggatgttttctccttttgcagtgatgcatcttgcttgcattccatttcctgtttctcttatatctagttattgccctcggtggcttaattaatgttcagtgtcgatgattcctgttttggttataagtatcaacaagttgacctatgcccattatgcacattctgattacgtgcagctttgagaagaacccacgcttggaaggtccagaactacaaggcctggctgtatatgacaccaactgctagatggaaacacgaggaaaagaatgggtagaaagtaatgggcgtaaaatgttaccgaaaaccgggtgatatagattatgttaggtttggacctaccactctgtaatcctccatgcatagctcttgtttgtgctgtttgtcggcaatgaagttgtatgttgtagcagaatactttctttctgtgaaagtaaacatggaactgcttatgtcatgagtcaaatgttattgttatcacgcttccctgtgttatattgaccaaactaaagatgaaagttcttgtctgctgattatatcctttgctaatgatggcacatttatgcagc
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| CDS seq | atgggggcgggggcgctgggggtggtggcgatggtggcggcggcggtggtggtggcgatggcgggggcgaactccgagggcgacgcgctgtcggcgctgcggcggagcctcagggaccccggcggggtgctgcagagctgggaccccacgctcgtcaacccctgcacctggttccacgtcacctgcgaccgcgacaaccgcgtcacgcgcctggatcttgggaatttgaacttatctggtcatctggtgcctgagcttggaaagttggatcatctgcaatatctggagctatacaagaataatattcaaggaacgatcccatcggaacttggtaatttgaagaatcttataagcttggacctgtacaagaacaacatttctgggactatacctccaacacttgggaaattaacgtcccttgtattcttgcggctcaatggcaatcgcttgactgggccaatcccaagggaactggccggaatatctagtcttaaagttgttgatgtttcaagcaatgatctgtgtggaacaattcctacatcaggaccatttgagcacaTtcccctaagcaactttgagaagaacccacgcttggaaggtccagaactacaaggcctggctgtatatgacaccaactgctag
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| Protein seq | MGAGALGVVAMVAAAVVVAMAGANSEGDALSALRRSLRDPGGVLQSWDPTLVNPCTWFHVTCDRDNRVTRLDLGNLNLSGHLVPELGKLDHLQYLELYKNNIQGTIPSELGNLKNLISLDLYKNNISGTIPPTLGKLTSLVFLRLNGNRLTGPIPRELAGISSLKVVDVSSNDLCGTIPTSGPFEHIPLSNFEKNPRLEGPELQGLAVYDTNC |
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| Function | Leucine-rich repeat protein 1 [UniProtKB/Swiss-Prot:Q5VQP7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0036560 | OsGoSa_01g0036560.01 | Chr01 | 35558245 | 35562379 | + | NAM | ||
| CDS seq | atgggggcgggggcgctgggggtggtggcgatggtggcggcggcggtggtggtggcgatggcgggggcgaactccgagggcgacgcgctgtcggcgctgcggcggagcctcagggaccccggcggggtgctgcagagctgggaccccacgctcgtcaacccctgcacctggttccacgtcacctgcgaccgcgacaaccgcgtcacgcgcctggatcttgggaatttgaacttatctggtcatctggtgcctgagcttggaaagttggatcatctgcaatatctggagctatacaagaataatattcaaggaacgatcccatcggaacttggtaatttgaagaatcttataagcttggacctgtacaagaacaacatttctgggactatacctccaacacttgggaaattaacgtcccttgtattcttgcggctcaatggcaatcgcttgactgggccaatcccaagggaactggccggaatatctagtcttaaagttgttgatgtttcaagcaatgatctgtgtggaacaattcctacatcaggaccatttgagcacaTtcccctaagcaactttgagaagaacccacgcttggaaggtccagaactacaaggcctggctgtatatgacaccaactgctag
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| Protein seq | MGAGALGVVAMVAAAVVVAMAGANSEGDALSALRRSLRDPGGVLQSWDPTLVNPCTWFHVTCDRDNRVTRLDLGNLNLSGHLVPELGKLDHLQYLELYKNNIQGTIPSELGNLKNLISLDLYKNNISGTIPPTLGKLTSLVFLRLNGNRLTGPIPRELAGISSLKVVDVSSNDLCGTIPTSGPFEHIPLSNFEKNPRLEGPELQGLAVYDTNC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0036560 | OsGoSa_01g0036560.02 | Chr01 | 35559355 | 35562379 | + | NAM | ||
| CDS seq | atgaagttgaattatttctcaagaacatcttcttctaattgttttcttggaatacatccctcttctaacagggatcttgggaatttgaacttatctggtcatctggtgcctgagcttggaaagttggatcatctgcaatatctggagctatacaagaataatattcaaggaacgatcccatcggaacttggtaatttgaagaatcttataagcttggacctgtacaagaacaacatttctgggactatacctccaacacttgggaaattaacgtcccttgtattcttgcggctcaatggcaatcgcttgactgggccaatcccaagggaactggccggaatatctagtcttaaagttgttgatgtttcaagcaatgatctgtgtggaacaattcctacatcaggaccatttgagcacaTtcccctaagcaactttgagaagaacccacgcttggaaggtccagaactacaaggcctggctgtatatgacaccaactgctag
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| Protein seq | MKLNYFSRTSSSNCFLGIHPSSNRDLGNLNLSGHLVPELGKLDHLQYLELYKNNIQGTIPSELGNLKNLISLDLYKNNISGTIPPTLGKLTSLVFLRLNGNRLTGPIPRELAGISSLKVVDVSSNDLCGTIPTSGPFEHIPLSNFEKNPRLEGPELQGLAVYDTNC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 11.130883 | 163.505447 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0809300 | RBH | 8.176684 | 6.015032 | 35.882259 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g59440 | RBH | 5.649399 | 4.125950 | 9.420048 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0809300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0037480 | RBH | 3.294843 | 117.095192 | 39.454376 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0036940 | RBH | 1.416334 | 57.577286 | 19.104084 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0037340 | RBH | 4.309937 | 121.433617 | 44.122616 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0036740 | RBH | 0.906643 | 3.853662 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028890 | SBH | 0.365616 | 2.909062 | 0.788778 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0567200 | SBH | 27.6827515 | 138.289467 | 124.8638875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0036130 | RBH | 1.143541 | 9.462470 | 8.215259 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0564700 | RBH | 37.283126 | 156.0121385 | 68.0994685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0036270 | RBH | 0.721124 | 2.489517 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028780 | SBH | 0.187327 | 1.690751 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0021710 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004890 | SBH | 0.0 | 1.489846 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023370 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G036920 | RBH | 1.021385 | 31.786877 | 25.667589 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0029170 | SBH | 0.000000 | 4.007949 | 0.201346 |
