Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0036740 | OGI:01013090 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:34685012-34688998 | ||||||||
| Gene Symbol | OsLRP, OsLRR1, LRR1 | ||||||||||
| DNA seq | GAGCAGCGGCAGGTGGTGGTGGTGGTGGTGGTGTTGTTGCTGCTGCTACTACTCTTCTTCCCCCTTCCTCGTGTTCCTCCTCTTCGCCTCGTCTCTCTGCCCTGCCTCGTGCGCGTCCAGATCCGGGAGGGATGGGGGCGGGGGCGCTGGGGGTGGTGGCGATGGTGGCGGCGGCGGTGGTGGTGGCGATGGCGGGGGCGAACTCCGAGGGCGACGCGCTGTCGGCGCTGCGGCGGAGCCTCAGGGACCCCGGCGGGGTGCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACGCGCCTGTGAGCGACCCTCTCCCTCCCTCCCTCTCCTCGCGCTGCGCTGTACTGTACGCGTAGGCTCGAGTTGGGTACTTTTGGGTGTTTGGGGGAACTGGATCGCGAGGCAAGCCGTGTTTGGATGAGCAGTCGATTCCGTTGCGGCCGCGTTGATCTAGAAGACTAGTAGAGCTGTAGTTCGTTGATGAGAGGAGAAACCGATCCACGAGGCAGCCTTTTTAGAGTTTTACTAGGATGTACTAGATTTTGTAAGAATTTTGCTATGGAACTTGTTGAGATTGTGTGGCTATGCCGTGATATGGCTTTACAGTTTTACTCAAAAGGCAAGTGCGCTTTTTTTATTATTGGACCGAGGAAAAATTGGAATGGTCCTGAGCAAATTGAAACATGACAAGAATCAGATAGATGTATCTCTTTTAATGAGAGTGTTATTAGGTTTCTTGGTTGGTTGGGCGGTTGGGGTGTTATGGTTGAAGAATTTAGATGTGAGAGGAATGATAAGGACCAAAGGCTAGAGAAAATTTTAGCTTCAATTGCTTACCCATTTGAACTTTCACAGCTTTCATTTCTTCTGTCTGTCATTTGTGTTCCAAAGTCCAAACCTCCAAAACACTTACTGTGCGTCAGTTCATGAAGTAAAAAAACAATCCACTTTACTATTAATCTTTTTCAGTGTGGTCAAAATCTATGGCCAGTTCCTTGTATTGTATATGAAGTTGAATTATTTCTCAAGAACATCTTCTTCTAATTGTTTTCTTGGAATACATCCCTCTTCTAACAGGGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAAGTTGGATCATCTGCAATATCTGTAAGCTTTTCTTGCCCATGTGGTTTGATTCTTTGCTAGTTCTTCTCAATTATTTTGTTTTACTTCTAATATGACATAGTTTAGTGATTGAGGTAGATAAGATACCATCTCATGTCCTTCCCACCGCACTCCTAAAACATGATATTGTGACATGGTTTTATACTTTTATGCATATTCTATGGTTGAACATTTATGTAAGATCCATTTTCTTTTATCTCCAAGATATCTGTCAAGTTCTATTCTCATACAGTTTGTGATGTCTGAGAATGATGTATTGAAGTTTTGTTTAGTTTAATGTATGATTGTTAGTTATTCGCATAATTTATATTGATGCACTTTGGTAGTATTAACCATCAGCATTGGAACAGGGAGCTATACAAGAATAATATTCAAGGAACGATCCCATCGGAACTTGGTAATTTGAAGAATCTTATAAGCTTGGACCTGTACAAGAACAACATTTCTGGGACTATACCTCCAACACTTGGGAAATTAACGTCCCTTGTATTCTTGTAAGTTTGTGTTATTCAAATGATCTCATTGTAAAATAGTTCTAAGTTCTCACATGTTAGCTACTGATTTCATGCCGTATATGCACATTCTGCATACTTCCTCCATTTCAAACTACAATGCCTGTGTTTTTACATTCTTACTTCAAAATAAATATGTGTATATCATATAGGTTTATTGATCCATACTCTCTTTTATCTTTGCTGCCTCTTCATCATTTGCGAGCAAACACCTACACAAACTATTTCTATCATGGCTATTTTCTGATTTAACTTCGTTAGTCCCTGTTCATGCTTTATAAGAAATAAGCGGGAATGCATATTGATGTCTTTAAAACTTTACCTTCAGCTTGTTTGAATTTTCTGGTGGTTTGTTGACTTATGCATTCTATCTTTCTAACACATTATTATGCTTTGAAGGCGGCTCAATGGCAATCGCTTGACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTGTAAGTACAATTCCTGGTGCTGAGTGCTTGGCTGCAAACAATCTTGAATGTGATAAATTTTACCCCCTTGTTCTTTCAGTGATGTTTCAAGCAATGGTCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAGTAAGTTTGACTGCCTTTGTGATACTATTATGATTTCTTCAGCAGTATTAAAGTCATTATCATTTTATATTAAATTTCAAAACTAATGGTAGCCCAAAACAAATTCTGACACAAGTTTGTTAGTGTCGTAATCAATACTTCCATAAGGTAAATTAAACTAGGAATTTAATGTTGGTGGCCAATATGAGGATCCTATACTAAACATTTCATGCCCATAGCCCCATAAGTAAGGTTTCTTTCTGATCCCTGCCATTTCATCATCATTACATCGTATTTCCTTCTGTTTTTCATATTCATTTGTACGTATATTCAATGTTTCCTTGATAACAAGTTAACAAACAAAATACTTGTGAGGAATTATTTTTCACTCATTACTCATTAGTGTTTTGGGGAGGCCCTTCCCACTGTGGCAAATACTTTATTATTGTTCCATTATTCTGGTTGACTACTTTGTAGTAATATAGTGTATCATCCCTATCTTCTAGTTTTTTTTAGGATATGGCCTGTAATTTGAAAGGGCACACGTGAGATCTATCATTGTTTATTGGGTCTTTCTAGGAATAACTTTTAGCCAAATGCCCTTGTGTTGCAAGGGACTTGAAATAACATTACAAAATATAAAGTCAAAAAGATTTATACATTGCTTGGAAAAAAATATTTTCAATCAAACATCAATCCAGAAATAGCCTAGCCACATACCCAAGCAATCTGTTTATCTAGAGAATATACCATCTTACACATTTTGGAGGCTGGATTGAATTCCATTGTCGAAAAACATCTTGAACACACGCATTGGCAGACTCACCATCACCAACACAATATAGTAGAGAGAGGTATATCACAGTATGAAGCAGCTCACCTAGTGGCTCTGCGTTAAATTCGAGAGCGGTTTAATAGTTGATCCATCCAATGCGCTTGCTTTGCCTCCCCTTGTGCTTGCATGTTTCTAGGCAACCTTCTGAGTATTCTGTATTTCTCTATTGATAAAGACACATAGGTAGGATGTTTACAAGTCTGTCTTCTGATCTATATGAGCAAGTATATATAGTCTTAGTTTCTGTAGACTTCTGTCCTGCGTGGATGTTTTCTCCTTTTGCAGTGATGCATCTTGCTTGCATTCCATTTCCTGTTTCTCTTATATCTAGTTATTGCCCTCGGTGGCTTAATTAATGTTCAGTGTCGATGATTCCTGTTTTGGTTATAAGTATCAACAAGTTGACCTATGCCCATTATGCACATTCTGATTACGTGCAGCTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGTATATGACACCAACTGCTAGATGGAAACACGAAGAAAAGAATGGGTAGAAAGTAATGGGCGTAAAATGTTACCGAAAACCGGGTGATATAGATTATGTTAGGTTTGGACCTACCACTCTGTAATCCTCCATGCATAGCTCTTGTTTGTGCTGTTTGTCGGCAATGAAGTTGTATGTTGTAGCAGAATACTTTCTTTCTGTGAAAGTAAACATGGAACTGCTTATGTCATGAGTCAAATGTTATTGTTATCACGCTTCCCTGTGTTATATTGACCAAACTAAAGATGAAAGTTCTTGTCTGCTGATTATATCCTTTGCTAATGATGGCACATTTATGCA
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| CDS seq | ATGGGGGCGGGGGCGCTGGGGGTGGTGGCGATGGTGGCGGCGGCGGTGGTGGTGGCGATGGCGGGGGCGAACTCCGAGGGCGACGCGCTGTCGGCGCTGCGGCGGAGCCTCAGGGACCCCGGCGGGGTGCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACGCGCCTGGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAAGTTGGATCATCTGCAATATCTGGAGCTATACAAGAATAATATTCAAGGAACGATCCCATCGGAACTTGGTAATTTGAAGAATCTTATAAGCTTGGACCTGTACAAGAACAACATTTCTGGGACTATACCTCCAACACTTGGGAAATTAACGTCCCTTGTATTCTTGCGGCTCAATGGCAATCGCTTGACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTTGATGTTTCAAGCAATGGTCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAACTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGTATATGACACCAACTGCTAG
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| Protein seq | MGAGALGVVAMVAAAVVVAMAGANSEGDALSALRRSLRDPGGVLQSWDPTLVNPCTWFHVTCDRDNRVTRLDLGNLNLSGHLVPELGKLDHLQYLELYKNNIQGTIPSELGNLKNLISLDLYKNNISGTIPPTLGKLTSLVFLRLNGNRLTGPIPRELAGISSLKVVDVSSNGLCGTIPTSGPFEHIPLSNFEKNPRLEGPELQGLAVYDTNC |
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| Function | Leucine-rich repeat protein 1 [UniProtKB/Swiss-Prot:Q5VQP7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0036740 | OsARC_01g0036740.02 | Chr01 | 34685976 | 34688998 | + | NAM | ||
| CDS seq | ATGAAGTTGAATTATTTCTCAAGAACATCTTCTTCTAATTGTTTTCTTGGAATACATCCCTCTTCTAACAGGGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAAGTTGGATCATCTGCAATATCTGGAGCTATACAAGAATAATATTCAAGGAACGATCCCATCGGAACTTGGTAATTTGAAGAATCTTATAAGCTTGGACCTGTACAAGAACAACATTTCTGGGACTATACCTCCAACACTTGGGAAATTAACGTCCCTTGTATTCTTGCGGCTCAATGGCAATCGCTTGACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTTGATGTTTCAAGCAATGGTCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAACTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGTATATGACACCAACTGCTAG
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| Protein seq | MKLNYFSRTSSSNCFLGIHPSSNRDLGNLNLSGHLVPELGKLDHLQYLELYKNNIQGTIPSELGNLKNLISLDLYKNNISGTIPPTLGKLTSLVFLRLNGNRLTGPIPRELAGISSLKVVDVSSNGLCGTIPTSGPFEHIPLSNFEKNPRLEGPELQGLAVYDTNC |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0036740 | OsARC_01g0036740.01 | Chr01 | 34685012 | 34688998 | + | NAM | ||
| CDS seq | ATGGGGGCGGGGGCGCTGGGGGTGGTGGCGATGGTGGCGGCGGCGGTGGTGGTGGCGATGGCGGGGGCGAACTCCGAGGGCGACGCGCTGTCGGCGCTGCGGCGGAGCCTCAGGGACCCCGGCGGGGTGCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACGCGCCTGGATCTTGGGAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGAAAGTTGGATCATCTGCAATATCTGGAGCTATACAAGAATAATATTCAAGGAACGATCCCATCGGAACTTGGTAATTTGAAGAATCTTATAAGCTTGGACCTGTACAAGAACAACATTTCTGGGACTATACCTCCAACACTTGGGAAATTAACGTCCCTTGTATTCTTGCGGCTCAATGGCAATCGCTTGACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTTGATGTTTCAAGCAATGGTCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAACTTTGAGAAGAACCCACGCTTGGAAGGTCCAGAACTACAAGGCCTGGCTGTATATGACACCAACTGCTAG
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| Protein seq | MGAGALGVVAMVAAAVVVAMAGANSEGDALSALRRSLRDPGGVLQSWDPTLVNPCTWFHVTCDRDNRVTRLDLGNLNLSGHLVPELGKLDHLQYLELYKNNIQGTIPSELGNLKNLISLDLYKNNISGTIPPTLGKLTSLVFLRLNGNRLTGPIPRELAGISSLKVVDVSSNGLCGTIPTSGPFEHIPLSNFEKNPRLEGPELQGLAVYDTNC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.906643 | 3.853662 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0809300 | SBH | 8.176684 | 6.015032 | 35.882259 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g59440 | SBH | 5.649399 | 4.125950 | 9.420048 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0809300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005120 | SBH | 0.0 | 6.103118 | 1.304607 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004820 | SBH | 0.0 | 7.977612 | 0.439358 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005070 | SBH | 0.0 | 7.761576 | 0.467349 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0021720 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0036380 | RBH | 22.455767 | 178.846283 | 72.693260 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0567200 | RBH | 27.6827515 | 138.289467 | 124.8638875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0036130 | RBH | 1.143541 | 9.462470 | 8.215259 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0564700 | RBH | 37.283126 | 156.0121385 | 68.0994685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0036270 | RBH | 0.721124 | 2.489517 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0036330 | RBH | 1.919805 | 83.656090 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0036560 | RBH | 11.130883 | 163.505447 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0044090 | SBH | 0.326436 | 0.0 | 0.583814 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0036430 | RBH | 0.578175 | 99.636841 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G036920 | RBH | 1.021385 | 31.786877 | 25.667589 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0036630 | RBH | 4.066639 | 126.647491 | 48.220707 |
