Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0036650 | OGI:04014670 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:35908375-35912345 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCAGCGGCAGGTGGGGGTGGTGGTGTTGTTGTTGCTGCTGCTGCTACTCTTCTTCCCCCTTCCTCGTGTTCCTCCTCTTCGCCTCGTCTCTCTGCCCTGCCTCGTGCGCGTCCAGATCCGGGAGGGATGGGGGCGGGGGCGCTGGGGGTGGTGGCGATGGTGGCGGCGGCGGTGGTGGTGGCGATGGCGGGGGCGAACTCCGAGGGCGACGCGCTGTCGGCGCTGCGGCGGAGCCTCAGGGACCCCGGCGGGGTGCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAAaccgcgtcacgcgcctgtgagcgaccctctccctccctccctctcctcgcgttgcgctgtactgtacgcgtaggctcgagttgggtacttttgggtgtttGggggaactggatcgcgaggcaagccgtgtttggatgagcagtcgattccgttgcggccgcgttgatctagaagactagtagagctgtagttcgttgatgagAggagaaaccgatccacgaggcagcctttttagagttttactaggatgtactagattttgtaagaattttgctatggaacttgttgagattgtgtggctatgccgtgatatggctttacagTtttactcAaaaggcAagtgcgctttttttattattggaccgaggaaaaaTtggaatggtcctgagcAaattgaaacatgacaagaatcagataGatgtatctcttttaatgagagtgttattaGgtttcttggttGgttGggcgGttggggtgttatggttgaagaatttagatgtgagaggaatgataaggaccaaaggctagagaaaattttagcttcaattgcttacccatttgaactttcacagctttcatttcttctgtctgtcatttgtgttccaaagtccAaacctccaaaacacttactgtgcgtcagttcatgaagtaaaaaaacaatccactttactattaatctttttcagtgtggtcaaaatctatggccagttCcttgtattgtatatgaagttgaattatttctcaagaacatcttcttctaattgttttcttggaatacatccctcttctaacagggatcttgggaatttgaacttatctggtcatctggtgcctgagcttggaaagttggatcatctgcaatatctgtaagcttttcttgcccatgtggtttgattctttgctagttcttctcaatTAttttGttttacttctaatatgacatagtttagtgattgaagtagataagataccatctcatgtccttcccaccgcactcctaaaacatgatattgtgacatggttttatacttttatgcAtattctatggttgaacatttatgtaagatccattttcttttatctccaagatatctgtcaagttctattctcatacagtttgtgatgtctgagaatgatgtattgaagTtttgtttagtttaatgtatgaTtgttagttattcgcataatttatattgatgcactttggtagtattaaccatcagcattggaacagggagctatacaagaataatattcaaggaacgatcccatcGgaacttggtaatttgaagaatcttataagcttggacctgtacaagaacaacatttctgggactatacctccaacacttgggaaattaacgtcccttgtattcttgtaagtttgtgttattcAaatgatctcattgtaaaatagttctaagttctcacatgttagctattgatttcatgctgtatatgcacattctgcatacttcctccatttcaaactacaatgcctgtgtttttgcattcttacttcaaaataaatacgtgtatatcatatagGtttattgatccatactctcttttatctttgctgcctcttcAtcatttgcgagcaaacacctacacaaactatttctatcatggctattttctgatttaacttcgttagtccctgttcatgctttataagaaataagcgggaatgcatattgatgtctttaaaactttaccttcagcttgtttgAattttctggtggtttgttgacttatgcattctatctttctaacacattaTtatgctttgaaggcggctcaatggcaatcgcttgactGggccaatcccaagggaactggccGgaatatctagtcttaaagttgtgtaagtacaattcctggtgctgagtgcttggctgcaaacaatcttgaatgtgatAaattttacccccttgttctttcagtgatgtttcaagcaatgatctgtgtggaacaattcctacatcaggaccaTttgagcacattcccctaagcaagtaagtttgactgcctttgtgatactattatgatttcttcagcagtattaaagtcattatcattttatattaaatttcAaaactAatggtagcccaaaacaaattctgacacaagtttgttagtgtcgTaatcaatacttccataaggtaaattaaactaggaatttaatgttggtggccaatatgaggatcctatactAAacatttcatgcccatagccccataagtaaggtttctttctgatccctgccatttcatcatcattacatcgtatttccttctgtatttcatattcatttgtacgtatattcaatgtttccttgataacaaGttaacaaacaaaatactcgtgaggAattatttttcactcattactcattagtgttttggggaggcccttcccactgtggcaaatactttattattgttccattattctgattgactactttgtagtaatatagtgtatcatccctatcttctagttttttttaggatatggcctgtaatttgaaaGggcacacgtgagatctatcattgtttaTTgggtctttctaGgaataacttttagccaaatgcccttgtgttgcaagggacttgaaataacattacaaaaTataaagtcaaaaagatttatacattgcttggAaaaaaaatattttcaatcaaacatcaatccagaaatagcctagccacatacccaagcaatctgtttatctagagaatataccatcttacacattttggaggctggattgaattccattgtcgaaaaacatcttgaacacacgcattggcagactcaccatcaccaacacaatatagtagagagaggtatatcacagtatgaagcagctcacctagtggctctgcgttaaattcgagagcggtttaatagttgatccatccAatgcgcttgctttgcctccccttgtgcttgcatgtttctaggcaaccttctgagtattctgtatttctctattgataaagacacataggtaggatgtttacaagtctgtcttctgatctatAtgagcaagtatatatagtcttagtttctgtagacttctgtcctgcgtggatgttttctccttttgcagtgatgcatcttgcttgcattccatttcctgtttctcttatatctagttattgccctcggtGgcttaattaatgttcagtgtcgatgattcctgttttggttataagtatcaacaagttgacctatgcccAttatgcacattctgattacgtgcagctttgagaagaacccacgcttggaaggtccagaactacaaggcctGgctgtatatgacaccaactgctagatggaaacacgaggAaaagaatgggtagaaagtaatgggcgtaaaatgttaccgaaaaccgggtgatatagattatgttaggtttggacctaccactctgtaatcctccatgcatagctcttgTttgtgctgtttgtcggcaatgaagttgtatgttgtagcagaatactttctttctgtgaaagtaaacatggaactgcttatgtcatgagtcaaatgttattgttatcacgcttccctgtgttatattgaccaaactaaagatgAaagttcttgtctgctgattatatcctttgctaatgat
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| CDS seq | CAGCGGCAGGTGGGGGTGGTGGTGTTGTTGTTGCTGCTGCTGCTACTCTTCTTCCCCCTTCCTCGTGTTCCTCCTCTTCGCCTCGTCTCTCTGCCCTGCCTCGTGCGCGTCCAGATCCGGGAGGGATGGGGGCGGGGGCGCTGGGGGTGGTGGCGATGGTGGCGGCGGCGGTGGTGGTGGCGATGGCGGGGGCGAACTCCGAGGGCGACGCGCTGTCGGCGCTGCGGCGGAGCCTCAGGGACCCCGGCGGGGTGCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAAaccgcgtcacgcgcctggatcttgggaatttgaacttatctggtcatctggtgcctgagcttggaaagttggatcatctgcaatatctggagctatacaagaataatattcaaggaacgatcccatcGgaacttggtaatttgaagaatcttataagcttggacctgtacaagaacaacatttctgggactatacctccaacacttgggaaattaacgtcccttgtattcttgcggctcaatggcaatcgcttgactGggccaatcccaagggaactggccGgaatatctagtcttaaagttgttgatgtttcaagcaatgatctgtgtggaacaattcctacatcaggaccaTttgagcacattcccctaagcaactttgagaagaacccacgcttggaaggtccagaactacaaggcctGgctgtatatgacaccaac
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| Protein seq | QRQVGVVVLLLLLLLLFFPLPRVPPLRLVSLPCLVRVQIREGWGRGRWGWWRWWRRRWWWRWRGRTPRATRCRRCGGASGTPAGCCRAGTPRSSTPAPGSTSPATATNRVTRLDLGNLNLSGHLVPELGKLDHLQYLELYKNNIQGTIPSELGNLKNLISLDLYKNNISGTIPPTLGKLTSLVFLRLNGNRLTGPIPRELAGISSLKVVDVSSNDLCGTIPTSGPFEHIPLSNFEKNPRLEGPELQGLAVYDTN |
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| Function | Leucine-rich repeat protein 1 [UniProtKB/Swiss-Prot:Q5VQP7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0036650 | OsLiXu_01g0036650.01 | Chr01 | 35909336 | 35912345 | + | NAM | ||
| CDS seq | atgaagttgaattatttctcaagaacatcttcttctaattgttttcttggaatacatccctcttctaacagggatcttgggaatttgaacttatctggtcatctggtgcctgagcttggaaagttggatcatctgcaatatctggagctatacaagaataatattcaaggaacgatcccatcGgaacttggtaatttgaagaatcttataagcttggacctgtacaagaacaacatttctgggactatacctccaacacttgggaaattaacgtcccttgtattcttgcggctcaatggcaatcgcttgactGggccaatcccaagggaactggccGgaatatctagtcttaaagttgttgatgtttcaagcaatgatctgtgtggaacaattcctacatcaggaccaTttgagcacattcccctaagcaactttgagaagaacccacgcttggaaggtccagaactacaaggcctGgctgtatatgacaccaactgctag
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| Protein seq | MKLNYFSRTSSSNCFLGIHPSSNRDLGNLNLSGHLVPELGKLDHLQYLELYKNNIQGTIPSELGNLKNLISLDLYKNNISGTIPPTLGKLTSLVFLRLNGNRLTGPIPRELAGISSLKVVDVSSNDLCGTIPTSGPFEHIPLSNFEKNPRLEGPELQGLAVYDTNC |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0036650 | OsLiXu_01g0036650.02 | Chr01 | 35908375 | 35912307 | + | IsoSeq | ||
| CDS seq | CAGCGGCAGGTGGGGGTGGTGGTGTTGTTGTTGCTGCTGCTGCTACTCTTCTTCCCCCTTCCTCGTGTTCCTCCTCTTCGCCTCGTCTCTCTGCCCTGCCTCGTGCGCGTCCAGATCCGGGAGGGATGGGGGCGGGGGCGCTGGGGGTGGTGGCGATGGTGGCGGCGGCGGTGGTGGTGGCGATGGCGGGGGCGAACTCCGAGGGCGACGCGCTGTCGGCGCTGCGGCGGAGCCTCAGGGACCCCGGCGGGGTGCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAAaccgcgtcacgcgcctggatcttgggaatttgaacttatctggtcatctggtgcctgagcttggaaagttggatcatctgcaatatctggagctatacaagaataatattcaaggaacgatcccatcGgaacttggtaatttgaagaatcttataagcttggacctgtacaagaacaacatttctgggactatacctccaacacttgggaaattaacgtcccttgtattcttgcggctcaatggcaatcgcttgactGggccaatcccaagggaactggccGgaatatctagtcttaaagttgttgatgtttcaagcaatgatctgtgtggaacaattcctacatcaggaccaTttgagcacattcccctaagcaactttgagaagaacccacgcttggaaggtccagaactacaaggcctGgctgtatatgacaccaac
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| Protein seq | QRQVGVVVLLLLLLLLFFPLPRVPPLRLVSLPCLVRVQIREGWGRGRWGWWRWWRRRWWWRWRGRTPRATRCRRCGGASGTPAGCCRAGTPRSSTPAPGSTSPATATNRVTRLDLGNLNLSGHLVPELGKLDHLQYLELYKNNIQGTIPSELGNLKNLISLDLYKNNISGTIPPTLGKLTSLVFLRLNGNRLTGPIPRELAGISSLKVVDVSSNDLCGTIPTSGPFEHIPLSNFEKNPRLEGPELQGLAVYDTN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.622669 | 14.557862 | 11.032617 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0809300 | SBH | 8.176684 | 6.015032 | 35.882259 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g59440 | SBH | 5.649399 | 4.125950 | 9.420048 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0515300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0037480 | SBH | 3.294843 | 117.095192 | 39.454376 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0036940 | SBH | 1.416334 | 57.577286 | 19.104084 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0037340 | SBH | 4.309937 | 121.433617 | 44.122616 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0036740 | SBH | 0.906643 | 3.853662 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0036380 | SBH | 22.455767 | 178.846283 | 72.693260 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0567200 | SBH | 27.6827515 | 138.289467 | 124.8638875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0036130 | SBH | 1.143541 | 9.462470 | 8.215259 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0564700 | SBH | 37.283126 | 156.0121385 | 68.0994685 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0036270 | SBH | 0.721124 | 2.489517 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004880 | SBH | 0.0 | 13.362262 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004940 | SBH | 0.0 | 84.853699 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0021780 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023370 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G023570 | SBH | 0.038315 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0036630 | SBH | 4.066639 | 126.647491 | 48.220707 |
