Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0511400 | OGI:01094760 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:18004602-18008011 | ||||||||
| Gene Symbol | OsOFP9, OsOFP13 | ||||||||||
| DNA seq | GACGGCGGCCACCGGAGGCGGAGGCCAACCGGGTGCACGGGGACGCGCGGTGGCCGGTAGGCTCCCCCTCCTCGTTGTGGGCGCACGGGGACGCACGGGGACACCACCGCCACTGCAGCTCCTCCTCCGAGCCGTCGCGCCGCGCCCCATCCCACCTCCCCGTGCCAGGATCGGCGATGGAGACTGGCGGACGCGGTTCCACCGAGGACGCAGGCGTGAATGGCGACCGGGAATCCCGCTCCACCACCCCAGATCCAAATGCGAGCTCGGTGATGACACATGGAGCTTGGGTCGGCGGCCGCGCGTGCGTCGGCAGCAGCGGCGGCGGCCACGACAGCAACAATGCCGGCACACTAGTGCCAGCGCCGGTGCCGGCGTCGTCGTCGTCGGTGAGCGCGGGGAGGCCGAGCCGGCGGCCGCGGTGGTGGCGGATGTGGCTGCGCGAGAGCGAGGCGGTGGTGATGGAGTCGACGGAGCAGAGCTGGAGCTGTGATGACGCTTTCTCTCGTGGCCCAATCTTCTGGTGAGGGGGATAACTCTCGCTTTGATCGAGTGCGACGTTTGCGATGTGGCTACCAACCAGAACAAGTCCAGGACGCCTGCAATCGCTACACTACAAACGATGTCGTATCAACCGTGACGCGCGGTTGATGATCCCTGCAATGCAAACGAGAGAACACTGCAAGAACAAGATAAGATGCAATCTAAATATTGCGAATAGGTAATTAAGCACAAATGAATAGTTGCAATTGAAGTGGTAGATCTAATCGACCCAGCAAATCAACACACAAACTATTAGGGGCTCTGAATCTATAGTCCTTGACTAATCGAATGAAGACTAGAGACAAGGTGAATGGCACTTGGCAAAATTCAACTAAACAAAACCCAATTGTTTTTAAGGATGTACAAAGCTATTTATAGAGGAAAATAAAGCTAGGGTTAAGTGCTAATTCGTGGAGGTGGAGGGAGACACTTCCGAGATGGGCCTAGTCTATTACAAGGCCCAAGACCCAAGTTCGGTTTGAGCAACATCACTGTCTTGTTTTGGTGATTCCCGTTGACTCGAGATGAATTTGGACATGAGACCGAATGCGTTTGAAAGGTAGCGAGATAGCTTTCCACAAAGTCCAAGATCACCCAAATCGGAGTTGGCAAGAAGGCGCTAGGTCCGTTTGAAGTCAGTGCTGTCTCCGGAGGCCGAAATGGACTTGGACTTGGAATTATCATTGGAACGTGTGAAGTTATGTGCGTTTCCGACGAAGTGATGTCCTCATCATCCTCCCCTTCTTGAATTGGAGTCGTCCTCGACTCAATCCCATCTTCTTGATCGTGTTCACTCTGTCGTCCAGGGGTCATCCTTGGAGGTATCTCATCATGAAAAGCACCCTCATATTCCTGCAAAAGGTTAGTAACAGCGAGTAGCAAAGAATATAAAGTACTGGAAGCAGTAGCCAATGTGGGTATATGATCTTTGCAAAATAGAGGATAGCAACAAGAATCTAGCTCTTCTAGTGCACAAATATTATATTTAGAAGCTAACAAAGCACCCGTCAACTTAATTTCATTCTTTGTGGCACTTGGTTCTGTTGTACTAGGTGAAGCAAGATTCTTAGTAATAATCTGATTTTCACTTTTCGCTTTCTTTTCACATTCAAGACTTGCAAGATCATCTTTCAAAGCAGCGGCTGGAGTCATAGAATGCAAAACAACTCTTTTACCATCGAATATAAATTTATATGTATTAGTCCTACCATCAAAAACAACTTCTCTATCATATTGCCATGGTCGCCCCAAAATAACAGAACAAGCTTGCATATACACAACATCACATTCAATTTGATCATGGTAGGAGCCTATAGAAAAAGTATTTTAACTAAGCGGGTTACCTTCATCTTACCACATGTATTAAACCACTGAATATGATACGGATGTGGATGTGGATGGGTAGTCAAGCCAAGCTTCTTGACCATCTCTTCACTTGCTAAATTGTTGCAACTCCCGCTATCAATAATCACTTTGACGGTATGGCCTTTCACAAGAACTTTGCTTTGGAATAAATTGTGGCGTTGGTTTTGCTCTTCACACTTCTCTTTAGCACTAAGTGCTAGCTTGACAATTAGGCTAGGATACTGATCTAGCGACTCTGGATGCAAATGGACTTCCTCGATGTCATCGTTATCTTGTCCTCCTACATGGTCAGTGGCAACTAAAGCATATTCATCATCACAATCACTAGTAGAAGTATACTCACCATCATCATTCACAAATAGAGCTCGCTGATTTGGATAGTCGCGGGCAATGTGTCCAATGCCATGGCACCTATGACATGTAATATCACGGGTACGTCCAGTGGAAGCTACCGAAGTTGCACTCTTGGCTGGAGTCTGAACTGAAGCATTTTTGCTTGTTTCTTGAGCATGGGATGGCGTGGAGGTAGGTGGACGAACGGCCGTAGTAAATTGACGTGGTGTTGATTGTCGTGTGGAAGTAGCACCTGCAAAAGAACTCCTATGCTTGTTGCGTCCCTGCACTTCTCTTTCAGCTTTGCAAGCAAATTGGAATAATCTATTCACGGTATTGTATTCTTTGTATTCAAGAATACCCCGCATCTCCACCAAAATGATAACAATCCGGCCTAGGTGGGGTTGGCCGAGGCCCAACAAATTAAGGTTGCCTGGACTCAAACAGTTCTTAGGCACACTAACTTGGGGAAAGGCCCAATCTCCCTAAAAGACTAATCCAATAGGGGAAGGGTGGCTCTCCCTTTTAAGGTGTCTTTCTCCTCCCAAGCTAAGCAAGGTGGGATTATTCAGAGGCTCACACGGTCGCCGCCCGACTTTTGCGTCTTTGCCAGCGGATAATAGTGGAGGATGTCCTCATCATTCCCACCCTCTTAACAAGGGCCCAGCTCTGATACCAAATGATAAAGATCTGGCCCAGGTGGGGTTGGCCGAGGCCCAACAAATTAAGGTTGCCCAGACCCCAACAGTTCTTAGGCACACCCACTCGGGGAAAGGCCCAATCTCCCCTAAAAAAATAGTCCAATAGGGGAAGGGTGGCTCTCCCTTTTAAGGTGTCTTCCTTCTCCCAAGCTAAGCAAGGTAGGATTATTCAGAGGCTCATACGGTTAGCGCTCGACTTTTGCGTCTTTGCCAGTGGGTAATAGTAGAGGATGTCCTCATCAAGCTGGTGGACAGCATGATCAAGATGCTGTGCACCAATGGCGTCTGGTGGCTGGAGGACCTGCAGGACCTCCTCGCCTGCTACCTCTCGCTCAACGCCGCCGAGCACCACCGCACCATCGTCGCACTCTTCCGCCGCGTCATCCTCGTCTGAATCCACCTTAGCAGCAGAGGCTTCTTCCCAGCCAAAGGCTTCTTGCTGACGCGGTGCAGCCTCCTGCCGACCGC
More
|
||||||||||
| CDS seq | TGGAGTCGACGGAGCAGAGCTGGAGCTCTGGTGGACAGCATGATCAAGATGCTGTGCACCAATGGCGTCTGGTGGCTGGAGGACCTGCAGGACCTCCTCGCCTGCTACCTCTCGCTCAACGCCGCCGAGCACCACCGCACCATCGTCGCACTCTTCCGCCGCGTCATCCTCGTCTGA |
||||||||||
| Protein seq | WSRRSRAGALVDSMIKMLCTNGVWWLEDLQDLLACYLSLNAAEHHRTIVALFRRVILV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0511400 | Os01t0511400-00 | Chr01 | 18004602 | 18008011 | + | irgsp1_rep | ||
| CDS seq | TGGAGTCGACGGAGCAGAGCTGGAGCTCTGGTGGACAGCATGATCAAGATGCTGTGCACCAATGGCGTCTGGTGGCTGGAGGACCTGCAGGACCTCCTCGCCTGCTACCTCTCGCTCAACGCCGCCGAGCACCACCGCACCATCGTCGCACTCTTCCGCCGCGTCATCCTCGTCTGA |
|||||||
| Protein seq | WSRRSRAGALVDSMIKMLCTNGVWWLEDLQDLLACYLSLNAAEHHRTIVALFRRVILV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0511400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21870 | SBH | 0.0 | 0.0 | 0.133687 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0336900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0033640 | RBH | 0.0 | 0.0 | 1.783406 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0033160 | RBH | 0.0 | 1.070111 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0033600 | RBH | 0.0 | 1.680896 | 0.530667 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0032860 | RBH | 0.0 | 0.009015 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0037510 | SBH | 0.0 | 0.511527 | 0.952479 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0206800 | SBH | 0.5061115 | 0.847861 | 0.4604305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016470 | SBH | 0.0 | 0.0 | 0.106984 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0211500 | SBH | 0.253398 | 0.077309 | 0.848691 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0037440 | SBH | 0.0 | 0.071644 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0037470 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037700 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037720 | SBH | 0.325687 | 0.280586 | 0.135737 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0037550 | SBH | 0.045872 | 0.817611 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016520 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0016490 | SBH | 0.0 | 0.0 | 0.0 |
