Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0037440 | OGI:01105280 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:36750298-36751993 | ||||||||
| Gene Symbol | OFP4, OsOFP4, OsOFP06, OsOFP6, OFP6, OsOFP9, OsOFP13 | ||||||||||
| DNA seq | tactactgtttgactccattagatttgtcattaatattatcatttatcaacaccactatttagtctttaccatagttgatttctacagtactagtagtaccctgttttgcctggattagcctctcacatttcatactagctactgtagtatagtaccataaatgtaaagagacagaagaacagcatagtatcccaggtctggataacactatttatcatacccaattttaggatcattaacaggctagagctaaccaagattctcaagacgacagctcttggcacgatgggactcattggattcaccatgcaagacaagagttgcattgcattgcactagcactagtgagcttgagaccgagctcttccgctacatcttgatgtccgcgaggttggcccagatatgctcgaacacgtcgacgatgaggtcgtggtactcggcggcgttgagcgacaggtagcacgccaggaggtcctccaggtcggcggcggtgcggatgccgttctcggcgatcatctcctccatggactcccggaagtccctcctcgggtcccgcgacgacttcaccaccgcgaagctctccgccaggggcggcttcgtcgtcggcgccggcgagcgcgccgccgcgggtggtggtggtggtggtggctttgacttcttggccacgatacgcggggtgttggcgcgcgtcttgaggcggcgcgcggatgacaccgaccgcctcggcttgctctgttcgaggaggggagtgggttttttagccgacgcgcgtctcacgacgtcgatgtgtttctcctccagatcgcagccgtcgagctctctcctcgccggcttggtcacgataggcgggagcaccttctcgggcctcttctcggtccgcaggtcgatgatgatgtctgtggcggaggtgatcaccttgccgtcgagctcgtcacacgcggcgacggcgaccgtcggcttcttgaattccacctcttcctcttcctcgtcatcgtcgtcgtcattgtagccgacgaacttgtcgcggcggcacggtggggtgtcgggcgcctcgaccacgacgagctccggcttgcgcccgcaccggcagccggtggacatcggcgaggacaggacgctgctgccgctgacggacggcgccagcttgacggaccgccgcctgtgcctgcgcctggacttcctcggcggcgacagctgaagaggaGggaattgcgtgtcggagcacttgggatggagcggcgaccccacgagcaggtcgccggcccgcggcgtgtagtagtaggacgccctgtgcgggagcgacaacgcgccgtgcctgggcgtgttcggcagcggccggcacgccctccccgcccgcgacacggccaccgaagactgcgtgaccaccccaccgtggctggccccgccgccgccagcgcccgcacctccccgggcggcgcgcatgtcgcggagcttgaagaaccacgcgttcgggatcatgtcggacagcctgaacttgtgcctccccatggcgcagcgctgcgctctgagctccacagaatgcgcggctgctcgagtataagaagagcaagaagaacaaagctttgtgtgggctgcgtttggttgcttgctgctgctgctgcgcagcttgctctgtacgaggaggagcagaggcgagcagaggaggagatggcgcggagcagaaaagggcgggta
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| CDS seq | atggggaggcacaagttcaggctgtccgacatgatcccgaacgcgtggttcttcaagctccgcgacatgcgcgccgcccggggaggtgcgggcgctggcggcggcggggccagccacggtggggtggtcacgcagtcttcggtggccgtgtcgcgggcggggagggcgtgccggccgctgccgaacacgcccaggcacggcgcgttgtcgctcccgcacagggcgtcctactactacacgccgcgggccggcgacctgctcgtggggtcgccgctccatcccaagtgctccgacacgcaattccCtcctcttcagctgtcgccgccgaggaagtccaggcgcaggcacaggcggcggtccgtcaagctggcgccgtccgtcagcggcagcagcgtcctgtcctcgccgatgtccaccggctgccggtgcgggcgcaagccggagctcgtcgtggtcgaggcgcccgacaccccaccgtgccgccgcgacaagttcgtcggctacaatgacgacgacgatgacgaggaagaggaagaggtggaattcaagaagccgacggtcgccgtcgccgcgtgtgacgagctcgacggcaaggtgatcacctccgccacagacatcatcatcgacctgcggaccgagaagaggcccgagaaggtgctcccgcctatcgtgaccaagccggcgaggagagagctcgacggctgcgatctggaggagaaacacatcgacgtcgtgagacgcgcgtcggctaaaaaacccactcccctcctcgaacagagcaagccgaggcggtcggtgtcatccgcgcgccgcctcaagacgcgcgccaacaccccgcgtatcgtggccaagaagtcaaagccaccaccaccaccaccacccgcggcggcgcgctcgccggcgccgacgacgaagccgcccctggcggagagcttcgcggtggtgaagtcgtcgcgggacccgaggagggacttccgggagtccatggaggagatgatcgccgagaacggcatccgcaccgccgccgacctggaggacctcctggcgtgctacctgtcgctcaacgccgccgagtaccacgacctcatcgtcgacgtgttcgagcatatctgggccaacctcgcggacatcaagatgtag
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| Protein seq | MGRHKFRLSDMIPNAWFFKLRDMRAARGGAGAGGGGASHGGVVTQSSVAVSRAGRACRPLPNTPRHGALSLPHRASYYYTPRAGDLLVGSPLHPKCSDTQFPPLQLSPPRKSRRRHRRRSVKLAPSVSGSSVLSSPMSTGCRCGRKPELVVVEAPDTPPCRRDKFVGYNDDDDDEEEEEVEFKKPTVAVAACDELDGKVITSATDIIIDLRTEKRPEKVLPPIVTKPARRELDGCDLEEKHIDVVRRASAKKPTPLLEQSKPRRSVSSARRLKTRANTPRIVAKKSKPPPPPPPAAARSPAPTTKPPLAESFAVVKSSRDPRRDFRESMEEMIAENGIRTAADLEDLLACYLSLNAAEYHDLIVDVFEHIWANLADIKM |
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| Function | Transcription repressor OFP4 [UniProtKB/Swiss-Prot:F4HNU8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0037440 | OsLima_01g0037440.01 | Chr01 | 36750298 | 36751993 | - | NAM | ||
| CDS seq | atggggaggcacaagttcaggctgtccgacatgatcccgaacgcgtggttcttcaagctccgcgacatgcgcgccgcccggggaggtgcgggcgctggcggcggcggggccagccacggtggggtggtcacgcagtcttcggtggccgtgtcgcgggcggggagggcgtgccggccgctgccgaacacgcccaggcacggcgcgttgtcgctcccgcacagggcgtcctactactacacgccgcgggccggcgacctgctcgtggggtcgccgctccatcccaagtgctccgacacgcaattccCtcctcttcagctgtcgccgccgaggaagtccaggcgcaggcacaggcggcggtccgtcaagctggcgccgtccgtcagcggcagcagcgtcctgtcctcgccgatgtccaccggctgccggtgcgggcgcaagccggagctcgtcgtggtcgaggcgcccgacaccccaccgtgccgccgcgacaagttcgtcggctacaatgacgacgacgatgacgaggaagaggaagaggtggaattcaagaagccgacggtcgccgtcgccgcgtgtgacgagctcgacggcaaggtgatcacctccgccacagacatcatcatcgacctgcggaccgagaagaggcccgagaaggtgctcccgcctatcgtgaccaagccggcgaggagagagctcgacggctgcgatctggaggagaaacacatcgacgtcgtgagacgcgcgtcggctaaaaaacccactcccctcctcgaacagagcaagccgaggcggtcggtgtcatccgcgcgccgcctcaagacgcgcgccaacaccccgcgtatcgtggccaagaagtcaaagccaccaccaccaccaccacccgcggcggcgcgctcgccggcgccgacgacgaagccgcccctggcggagagcttcgcggtggtgaagtcgtcgcgggacccgaggagggacttccgggagtccatggaggagatgatcgccgagaacggcatccgcaccgccgccgacctggaggacctcctggcgtgctacctgtcgctcaacgccgccgagtaccacgacctcatcgtcgacgtgttcgagcatatctgggccaacctcgcggacatcaagatgtag
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| Protein seq | MGRHKFRLSDMIPNAWFFKLRDMRAARGGAGAGGGGASHGGVVTQSSVAVSRAGRACRPLPNTPRHGALSLPHRASYYYTPRAGDLLVGSPLHPKCSDTQFPPLQLSPPRKSRRRHRRRSVKLAPSVSGSSVLSSPMSTGCRCGRKPELVVVEAPDTPPCRRDKFVGYNDDDDDEEEEEVEFKKPTVAVAACDELDGKVITSATDIIIDLRTEKRPEKVLPPIVTKPARRELDGCDLEEKHIDVVRRASAKKPTPLLEQSKPRRSVSSARRLKTRANTPRIVAKKSKPPPPPPPAAARSPAPTTKPPLAESFAVVKSSRDPRRDFRESMEEMIAENGIRTAADLEDLLACYLSLNAAEYHDLIVDVFEHIWANLADIKM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.071644 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0823500 | RBH | 0.0 | 0.323164 | 0.779239 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g60810 | RBH | 0.0 | 0.213707 | 0.180840 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0823500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038530 | RBH | 0.0 | 1.547248 | 2.048020 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0038020 | RBH | 0.0 | 1.240873 | 0.749341 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038430 | RBH | 0.0 | 0.0 | 0.780775 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0037880 | RBH | 0.042048 | 0.034780 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0037510 | RBH | 0.0 | 0.511527 | 0.952479 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0582000 | RBH | 2.9877195 | 2.094048 | 1.4642795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0037210 | RBH | 0.0 | 0.0 | 0.196829 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0577600 | RBH | 3.8273795 | 1.0408205 | 4.104266 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020590 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0037470 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037700 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037720 | RBH | 0.325687 | 0.280586 | 0.135737 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0037550 | RBH | 0.045872 | 0.817611 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G038050 | RBH | 0.0 | 0.0 | 0.622821 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037730 | RBH | 0.270010 | 0.0 | 2.776820 |
