Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0511400 | OGI:01094760 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:18004602-18008011 | ||||||||
| Gene Symbol | OsOFP9, OsOFP13 | ||||||||||
| DNA seq | GACGGCGGCCACCGGAGGCGGAGGCCAACCGGGTGCACGGGGACGCGCGGTGGCCGGTAGGCTCCCCCTCCTCGTTGTGGGCGCACGGGGACGCACGGGGACACCACCGCCACTGCAGCTCCTCCTCCGAGCCGTCGCGCCGCGCCCCATCCCACCTCCCCGTGCCAGGATCGGCGATGGAGACTGGCGGACGCGGTTCCACCGAGGACGCAGGCGTGAATGGCGACCGGGAATCCCGCTCCACCACCCCAGATCCAAATGCGAGCTCGGTGATGACACATGGAGCTTGGGTCGGCGGCCGCGCGTGCGTCGGCAGCAGCGGCGGCGGCCACGACAGCAACAATGCCGGCACACTAGTGCCAGCGCCGGTGCCGGCGTCGTCGTCGTCGGTGAGCGCGGGGAGGCCGAGCCGGCGGCCGCGGTGGTGGCGGATGTGGCTGCGCGAGAGCGAGGCGGTGGTGATGGAGTCGACGGAGCAGAGCTGGAGCTGTGATGACGCTTTCTCTCGTGGCCCAATCTTCTGGTGAGGGGGATAACTCTCGCTTTGATCGAGTGCGACGTTTGCGATGTGGCTACCAACCAGAACAAGTCCAGGACGCCTGCAATCGCTACACTACAAACGATGTCGTATCAACCGTGACGCGCGGTTGATGATCCCTGCAATGCAAACGAGAGAACACTGCAAGAACAAGATAAGATGCAATCTAAATATTGCGAATAGGTAATTAAGCACAAATGAATAGTTGCAATTGAAGTGGTAGATCTAATCGACCCAGCAAATCAACACACAAACTATTAGGGGCTCTGAATCTATAGTCCTTGACTAATCGAATGAAGACTAGAGACAAGGTGAATGGCACTTGGCAAAATTCAACTAAACAAAACCCAATTGTTTTTAAGGATGTACAAAGCTATTTATAGAGGAAAATAAAGCTAGGGTTAAGTGCTAATTCGTGGAGGTGGAGGGAGACACTTCCGAGATGGGCCTAGTCTATTACAAGGCCCAAGACCCAAGTTCGGTTTGAGCAACATCACTGTCTTGTTTTGGTGATTCCCGTTGACTCGAGATGAATTTGGACATGAGACCGAATGCGTTTGAAAGGTAGCGAGATAGCTTTCCACAAAGTCCAAGATCACCCAAATCGGAGTTGGCAAGAAGGCGCTAGGTCCGTTTGAAGTCAGTGCTGTCTCCGGAGGCCGAAATGGACTTGGACTTGGAATTATCATTGGAACGTGTGAAGTTATGTGCGTTTCCGACGAAGTGATGTCCTCATCATCCTCCCCTTCTTGAATTGGAGTCGTCCTCGACTCAATCCCATCTTCTTGATCGTGTTCACTCTGTCGTCCAGGGGTCATCCTTGGAGGTATCTCATCATGAAAAGCACCCTCATATTCCTGCAAAAGGTTAGTAACAGCGAGTAGCAAAGAATATAAAGTACTGGAAGCAGTAGCCAATGTGGGTATATGATCTTTGCAAAATAGAGGATAGCAACAAGAATCTAGCTCTTCTAGTGCACAAATATTATATTTAGAAGCTAACAAAGCACCCGTCAACTTAATTTCATTCTTTGTGGCACTTGGTTCTGTTGTACTAGGTGAAGCAAGATTCTTAGTAATAATCTGATTTTCACTTTTCGCTTTCTTTTCACATTCAAGACTTGCAAGATCATCTTTCAAAGCAGCGGCTGGAGTCATAGAATGCAAAACAACTCTTTTACCATCGAATATAAATTTATATGTATTAGTCCTACCATCAAAAACAACTTCTCTATCATATTGCCATGGTCGCCCCAAAATAACAGAACAAGCTTGCATATACACAACATCACATTCAATTTGATCATGGTAGGAGCCTATAGAAAAAGTATTTTAACTAAGCGGGTTACCTTCATCTTACCACATGTATTAAACCACTGAATATGATACGGATGTGGATGTGGATGGGTAGTCAAGCCAAGCTTCTTGACCATCTCTTCACTTGCTAAATTGTTGCAACTCCCGCTATCAATAATCACTTTGACGGTATGGCCTTTCACAAGAACTTTGCTTTGGAATAAATTGTGGCGTTGGTTTTGCTCTTCACACTTCTCTTTAGCACTAAGTGCTAGCTTGACAATTAGGCTAGGATACTGATCTAGCGACTCTGGATGCAAATGGACTTCCTCGATGTCATCGTTATCTTGTCCTCCTACATGGTCAGTGGCAACTAAAGCATATTCATCATCACAATCACTAGTAGAAGTATACTCACCATCATCATTCACAAATAGAGCTCGCTGATTTGGATAGTCGCGGGCAATGTGTCCAATGCCATGGCACCTATGACATGTAATATCACGGGTACGTCCAGTGGAAGCTACCGAAGTTGCACTCTTGGCTGGAGTCTGAACTGAAGCATTTTTGCTTGTTTCTTGAGCATGGGATGGCGTGGAGGTAGGTGGACGAACGGCCGTAGTAAATTGACGTGGTGTTGATTGTCGTGTGGAAGTAGCACCTGCAAAAGAACTCCTATGCTTGTTGCGTCCCTGCACTTCTCTTTCAGCTTTGCAAGCAAATTGGAATAATCTATTCACGGTATTGTATTCTTTGTATTCAAGAATACCCCGCATCTCCACCAAAATGATAACAATCCGGCCTAGGTGGGGTTGGCCGAGGCCCAACAAATTAAGGTTGCCTGGACTCAAACAGTTCTTAGGCACACTAACTTGGGGAAAGGCCCAATCTCCCTAAAAGACTAATCCAATAGGGGAAGGGTGGCTCTCCCTTTTAAGGTGTCTTTCTCCTCCCAAGCTAAGCAAGGTGGGATTATTCAGAGGCTCACACGGTCGCCGCCCGACTTTTGCGTCTTTGCCAGCGGATAATAGTGGAGGATGTCCTCATCATTCCCACCCTCTTAACAAGGGCCCAGCTCTGATACCAAATGATAAAGATCTGGCCCAGGTGGGGTTGGCCGAGGCCCAACAAATTAAGGTTGCCCAGACCCCAACAGTTCTTAGGCACACCCACTCGGGGAAAGGCCCAATCTCCCCTAAAAAAATAGTCCAATAGGGGAAGGGTGGCTCTCCCTTTTAAGGTGTCTTCCTTCTCCCAAGCTAAGCAAGGTAGGATTATTCAGAGGCTCATACGGTTAGCGCTCGACTTTTGCGTCTTTGCCAGTGGGTAATAGTAGAGGATGTCCTCATCAAGCTGGTGGACAGCATGATCAAGATGCTGTGCACCAATGGCGTCTGGTGGCTGGAGGACCTGCAGGACCTCCTCGCCTGCTACCTCTCGCTCAACGCCGCCGAGCACCACCGCACCATCGTCGCACTCTTCCGCCGCGTCATCCTCGTCTGAATCCACCTTAGCAGCAGAGGCTTCTTCCCAGCCAAAGGCTTCTTGCTGACGCGGTGCAGCCTCCTGCCGACCGC
More
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| CDS seq | TGGAGTCGACGGAGCAGAGCTGGAGCTCTGGTGGACAGCATGATCAAGATGCTGTGCACCAATGGCGTCTGGTGGCTGGAGGACCTGCAGGACCTCCTCGCCTGCTACCTCTCGCTCAACGCCGCCGAGCACCACCGCACCATCGTCGCACTCTTCCGCCGCGTCATCCTCGTCTGA |
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| Protein seq | WSRRSRAGALVDSMIKMLCTNGVWWLEDLQDLLACYLSLNAAEHHRTIVALFRRVILV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0511400 | OsNip_01t0511400-00 | Chr01 | 18004602 | 18008011 | + | RAP2018-11-26 | ||
| CDS seq | TGGAGTCGACGGAGCAGAGCTGGAGCTCTGGTGGACAGCATGATCAAGATGCTGTGCACCAATGGCGTCTGGTGGCTGGAGGACCTGCAGGACCTCCTCGCCTGCTACCTCTCGCTCAACGCCGCCGAGCACCACCGCACCATCGTCGCACTCTTCCGCCGCGTCATCCTCGTCTGA |
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| Protein seq | WSRRSRAGALVDSMIKMLCTNGVWWLEDLQDLLACYLSLNAAEHHRTIVALFRRVILV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0336900 | SBH | 0.0 | 0.0 | 0.731035 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21870 | SBH | 0.0 | 0.0 | 0.133687 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0511400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038530 | SBH | 0.0 | 1.547248 | 2.048020 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0038020 | SBH | 0.0 | 1.240873 | 0.749341 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038430 | SBH | 0.0 | 0.0 | 0.780775 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0037880 | SBH | 0.042048 | 0.034780 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0032630 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0206800 | SBH | 0.5061115 | 0.847861 | 0.4604305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016470 | SBH | 0.0 | 0.0 | 0.106984 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0211500 | SBH | 0.253398 | 0.077309 | 0.848691 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0032520 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0032580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0032820 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0032930 | RBH | 0.0 | 0.334886 | 0.050962 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0032710 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016520 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0016490 | SBH | 0.0 | 0.0 | 0.0 |
