Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0336900 | OGI:03033260 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:12509759-12510704 | ||||||||
| Gene Symbol | OsOFP9, OsOFP13 | ||||||||||
| DNA seq | TCACTGGCCGGGAAGAAGCCTCTGGCTGCCGAGGTGGATCCAGACGAGGACGACGCGGCGGAAGAGCGCGACGATGGTGCGGTGGTGCTCGGCGGCGTTGAGCGAGAGGTAGCAGGCGAGGAGGTCCTGCAGGTCCTCCAGCCGACGGACGCCATTGGTGCACAGCATCTCGATCATGCTGTCCACCAGCTCCAGCTCCGGCTCCGTCGACTCCAACACCACCGCCTCGCTCTCCCGCAGCCACATCCGCCGCCGCCGCGGCCGCCGGCTCGGCCTCCCCGCGCTCACCGACGACGACGACGACGCCGGCGCCGGCGCCGACACCGGTGTGCCGGCATTGTTGCTGTCGTGGCCGCCGCCGCTGCTGCCGACGCGGCGCAGCCTCCTGCTGGCGGCGGTCGGTCTCACGTGGAACCCCCGCGCCCTGGTAGACGGCGTCGTGGCCGCCGAGGTGCTTGAGCTGTCCGACGCCTCGTTCTTGCCGGCGGCGGCGTGCCGCCGGCTCGTGACGATGGGCCTCAGCTTGAGCTCCGGCGTCGCTGGCGGCGCGTCGAGGCCGTCGGCCCGGCGGTGGACCACGTCGACGCCGACGTCGAGAGCCTCCTCCTCCTCCACCTCGTCGTCGCACGGGAGCAACATGTCCTGCCTGTCCTCCTGGCGCGCGCGGTCGGCGCTGTTGAGGTAGTACGACTCCCTGTTGGGGCAGTAGCAGCAGCACGGGCTCAGGCCGCCGGCCGGCGCCGCCGCCGCCGGTGGCTGGCGTGGCGCCGCCGGGGGGACGGCGGACGCGTCGGAGGGTCGGGCCGTTGACGCGGGGCTCGCCCGCTTGCTCTTCTTCTTCCTCCTCCTCCGCAGCTTCAGCTTGTGCAACCATGACCAGCGGGAGGAGGAGGAGGAGGCTGGCATCGCGTGGCGTGCGTGGGCTGGGGGCGCGGGAGACAAGAGA
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| CDS seq | ATGCCAGCCTCCTCCTCCTCCTCCCGCTGGTCATGGTTGCACAAGCTGAAGCTGCGGAGGAGGAGGAAGAAGAAGAGCAAGCGGGCGAGCCCCGCGTCAACGGCCCGACCCTCCGACGCGTCCGCCGTCCCCCCGGCGGCGCCACGCCAGCCACCGGCGGCGGCGGCGCCGGCCGGCGGCCTGAGCCCGTGCTGCTGCTACTGCCCCAACAGGGAGTCGTACTACCTCAACAGCGCCGACCGCGCGCGCCAGGAGGACAGGCAGGACATGTTGCTCCCGTGCGACGACGAGGTGGAGGAGGAGGAGGCTCTCGACGTCGGCGTCGACGTGGTCCACCGCCGGGCCGACGGCCTCGACGCGCCGCCAGCGACGCCGGAGCTCAAGCTGAGGCCCATCGTCACGAGCCGGCGGCACGCCGCCGCCGGCAAGAACGAGGCGTCGGACAGCTCAAGCACCTCGGCGGCCACGACGCCGTCTACCAGGGCGCGGGGGTTCCACGTGAGACCGACCGCCGCCAGCAGGAGGCTGCGCCGCGTCGGCAGCAGCGGCGGCGGCCACGACAGCAACAATGCCGGCACACCGGTGTCGGCGCCGGCGCCGGCGTCGTCGTCGTCGTCGGTGAGCGCGGGGAGGCCGAGCCGGCGGCCGCGGCGGCGGCGGATGTGGCTGCGGGAGAGCGAGGCGGTGGTGTTGGAGTCGACGGAGCCGGAGCTGGAGCTGGTGGACAGCATGATCGAGATGCTGTGCACCAATGGCGTCCGTCGGCTGGAGGACCTGCAGGACCTCCTCGCCTGCTACCTCTCGCTCAACGCCGCCGAGCACCACCGCACCATCGTCGCGCTCTTCCGCCGCGTCGTCCTCGTCTGGATCCACCTCGGCAGCCAGAGGCTTCTTCCCGGCCAGTGA
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| Protein seq | MPASSSSSRWSWLHKLKLRRRRKKKSKRASPASTARPSDASAVPPAAPRQPPAAAAPAGGLSPCCCYCPNRESYYLNSADRARQEDRQDMLLPCDDEVEEEEALDVGVDVVHRRADGLDAPPATPELKLRPIVTSRRHAAAGKNEASDSSSTSAATTPSTRARGFHVRPTAASRRLRRVGSSGGGHDSNNAGTPVSAPAPASSSSSVSAGRPSRRPRRRRMWLRESEAVVLESTEPELELVDSMIEMLCTNGVRRLEDLQDLLACYLSLNAAEHHRTIVALFRRVVLVWIHLGSQRLLPGQ |
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| Function | Transcription repressor OFP3 [UniProtKB/Swiss-Prot:Q9LVL4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0336900 | Os03t0336900-00 | Chr03 | 12509759 | 12510704 | - | irgsp1_rep | ||
| CDS seq | ATGCCAGCCTCCTCCTCCTCCTCCCGCTGGTCATGGTTGCACAAGCTGAAGCTGCGGAGGAGGAGGAAGAAGAAGAGCAAGCGGGCGAGCCCCGCGTCAACGGCCCGACCCTCCGACGCGTCCGCCGTCCCCCCGGCGGCGCCACGCCAGCCACCGGCGGCGGCGGCGCCGGCCGGCGGCCTGAGCCCGTGCTGCTGCTACTGCCCCAACAGGGAGTCGTACTACCTCAACAGCGCCGACCGCGCGCGCCAGGAGGACAGGCAGGACATGTTGCTCCCGTGCGACGACGAGGTGGAGGAGGAGGAGGCTCTCGACGTCGGCGTCGACGTGGTCCACCGCCGGGCCGACGGCCTCGACGCGCCGCCAGCGACGCCGGAGCTCAAGCTGAGGCCCATCGTCACGAGCCGGCGGCACGCCGCCGCCGGCAAGAACGAGGCGTCGGACAGCTCAAGCACCTCGGCGGCCACGACGCCGTCTACCAGGGCGCGGGGGTTCCACGTGAGACCGACCGCCGCCAGCAGGAGGCTGCGCCGCGTCGGCAGCAGCGGCGGCGGCCACGACAGCAACAATGCCGGCACACCGGTGTCGGCGCCGGCGCCGGCGTCGTCGTCGTCGTCGGTGAGCGCGGGGAGGCCGAGCCGGCGGCCGCGGCGGCGGCGGATGTGGCTGCGGGAGAGCGAGGCGGTGGTGTTGGAGTCGACGGAGCCGGAGCTGGAGCTGGTGGACAGCATGATCGAGATGCTGTGCACCAATGGCGTCCGTCGGCTGGAGGACCTGCAGGACCTCCTCGCCTGCTACCTCTCGCTCAACGCCGCCGAGCACCACCGCACCATCGTCGCGCTCTTCCGCCGCGTCGTCCTCGTCTGGATCCACCTCGGCAGCCAGAGGCTTCTTCCCGGCCAGTGA
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| Protein seq | MPASSSSSRWSWLHKLKLRRRRKKKSKRASPASTARPSDASAVPPAAPRQPPAAAAPAGGLSPCCCYCPNRESYYLNSADRARQEDRQDMLLPCDDEVEEEEALDVGVDVVHRRADGLDAPPATPELKLRPIVTSRRHAAAGKNEASDSSSTSAATTPSTRARGFHVRPTAASRRLRRVGSSGGGHDSNNAGTPVSAPAPASSSSSVSAGRPSRRPRRRRMWLRESEAVVLESTEPELELVDSMIEMLCTNGVRRLEDLQDLLACYLSLNAAEHHRTIVALFRRVVLVWIHLGSQRLLPGQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0336900 | RBH | 0.0 | 0.0 | 0.731035 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21870 | RBH | 0.0 | 0.0 | 0.133687 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0679200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0016960 | RBH | 0.0 | 0.0 | 1.076515 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0016800 | RBH | 0.0 | 0.0 | 0.146190 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016820 | RBH | 0.0 | 1.747226 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016820 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0016600 | RBH | 0.908712 | 0.0 | 1.472339 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0206800 | RBH | 0.5061115 | 0.847861 | 0.4604305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016470 | RBH | 0.0 | 0.0 | 0.106984 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0211500 | RBH | 0.253398 | 0.077309 | 0.848691 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016700 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0016740 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0016660 | RBH | 0.0 | 0.0 | 0.185939 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0016570 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016520 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0016490 | RBH | 0.0 | 0.0 | 0.0 |
