Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g47160 | OGI:11010520 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:28371257-28373985 | ||||||||
| Gene Symbol | RLCK354, OsRLCK354 | ||||||||||
| DNA seq | ATGGCGCCTGGATCTCCAGTATGCATCAGCGTGTCCGCTCTGCTGTTGATCACTTTGTCCCCTGCGGTTGCTGCTGCTGCTGCTTCTCCTCCAGGGAGGAGCAAGAGCAATGGCAGCGACACCGATCTCGCTGCGCTGCTGGCTTTCAAAGGCGAGCTCTCCGATCCCTACAGCCTTCTTGCCACCAACTGGACTGCTGGCACTCCGTTCTGCCGGTGGATGGGGATCACTTGCAGCCGGCGGCAGCAGCAGCGTGTCACCGGAGTGGAGCTGCCCGGAGTTCCCCTCCAAGGAAAGCTGAGCCCTCACATCGGTAACCTATCTTTCCTCTCCGTCCTTAACCTCACCATCACAAACCTCACGGGCTCAATCCCAGACGATATCGGAAGGCTGCATCGCCTCGAGCTCCTTGATCTTGGCAATAATGCTTTCTCAGGTGTCATCCCAGCCTCCATAGGCAACCTCACGAGGCTTGGCGTTCTTCGTCTCGCGGTTAACCAGCTCTCTGGACAAATCCCAGCCGATCTGCAAGGCCTGCACAGCCTTCGCAGCATCAACATTCGGAACAATGGCCTCACTGGGTCGATCCCAAACAGTCTGTTCAACAACACCCCTTTGTTATCTTACCTCAACATTGCCAACAACAGCCTTTCTGGATCAATACCACCTTGCTTCAATTCCTTGACTTGCAGGTCAATCGTCTCACCGGACCGGTACCACCAGGCGTCTTCAACATGTCTATGCTAGGAGTTATTGCTCTTGCCTTGAACGGCTTAACTGGCCCTATCCCAGGCAACGAAAGCTTCAGACTCCCGAGTCTCTGGTTTTTCTCCGTTGATGCCAACAATTTCACCGGTCCGATACCACAGGGGTTTGCGGCGTGCCAGCAACTCCAGGTTTTTTCCCTCATTCAGAACTTATTCGAGGGTGCTTTGCCATCATGGCTGGGCAAGTTGACGAATCTCGTCAAGCTCAACTTGGGTGAGAATCACTTCGATGGTGGTTCAATCCCTGATGCGTTAAGCAACATTACCATGCTGGCTTCCCTAGAGCTCAGCACGTGCAACCTAACAGGAACCATTCCAGCAGATATTGGAAAGCTTGGAAAACTTTCAGATTTGCTTATTGCAAGGAATCAACTAAGAGGACCCATTCCTGCTTCTCTCGGCAACTTATCTGCATTATCACGCCTGGATTTGAGCACAAACCTGTTGGATGGATCTGTCCCAGCAACAGTTGGCAGCATGAACTCTTTGACATACTTTGTTATTTTCGAAAATAGCTTACAAGGGGATCTCAAATTCTTGTCTGCTCTTTCCAACTGTAGGAAGCTTTCTGTCCTTGAAATCGACTCAAATTATTTCACCGGAAACCTCCCAGACTATGTGGGCAATCTATCAAGCACGCTGCAAGCATTCATCGCACGTCGAAACAATATATCCGGTGTCCTTCCATCTACAGTTTGGAACTTAACTAGTCTCAAGTATCTAGATCTTAGTGATAACCAACTGCACAGTACAATATCAGAATCAATCATGGATTTGGAGATACTACAGTGGCTTGATCTCAGTGAAAATAGCTTGTTTGGCCCCATCCCGTCAAATATCGGCGTGCTGAAGAATATTCAAAGATTATTTCTTGGAACAAACCAATTCTCCAGCTCCATATCGATGGGCATTAGTAACATGACCAAGTTAGAATACCTAGATTTATCTGATAACCAACTAGCATCCACTGTACCACCGAGCTTATTTCATCTTGATAGACTTGTTAAACTAGATCTGTCCCACAATTTCTTAAGTGGTGCATTACCGGCTGATATAGGCTATTTGAAGCAAATGAATATCATGGATCTCTCTAGCAACCACTTCACTGGCATCCTCCCAGATTCAATTGAACTTCAAATGATAGCCTACTTGAACCTATCAGTCAATTTATTCCAAAATTCAATTCCAGATTCTTTTCGTGTGCTTACCAGCTTAGAAACTTTGGATCTATCCCACAACAATATTTCCGGTACCATCCCGGAATACCTGGCCAATTTTACTGTCCTTTCCAGCTTGAACCTATCTTTCAACAACCTACATGGTCAAATACCAGAAACAGGTGTCTTCTCAAACATCACGCTGGAATCCTTGGTTGGGAACTCAGGGCTATGTGGTGCTGTCCGTTTAGGATTTTCACCATGCCAAACAACCTCTCCCAAAAAAAACCATCGGATCATAAAATACTTAGTCCCTCCTATAATTATCACAGTTGGAGCTGTAGCTTGCTGCTTATATGTAATTCTTAAATATAAAGTTAAGCATCAAAAGATGTCTGTTGGTATGGTTGACATGGCCAGACATCAACTACTCTCCTACCATGAGCTTGCTCGTGCTACTAATGATTTCAGTGATGATAATATGTTGGGCTCTGGAAGCTTTGGAAAAGTTTTTAAGGGTCAGCTGAGCAGCGGTTTGGTGGTTGCCATAAAAGTTATACACCAACATATGGAACATGCCATTAGAAGCTTTGATACTGAGTGCCGGGTGCTTAGAACGGCTAGGCATCGCAACTTGATAAAGATACTTAACACTTGTTCCAACCAGGACTTCAGAGCACTGGTTCTTGAGTACATGCCCAATGGAAGCTTAGAGGCACTCCTACACTCTTATCAAAGAATTCAATTAAGTTTCCTTGAGCGGTTGGATATTACTCCCTCCGTCCCACAATATAAGGGATTTTGA
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| CDS seq | ATGGCGCCTGGATCTCCAGTATGCATCAGCGTGTCCGCTCTGCTGTTGATCACTTTGTCCCCTGCGGTTGCTGCTGCTGCTGCTTCTCCTCCAGGGAGGAGCAAGAGCAATGGCAGCGACACCGATCTCGCTGCGCTGCTGGCTTTCAAAGGCGAGCTCTCCGATCCCTACAGCCTTCTTGCCACCAACTGGACTGCTGGCACTCCGTTCTGCCGGTGGATGGGGATCACTTGCAGCCGGCGGCAGCAGCAGCGTGTCACCGGAGTGGAGCTGCCCGGAGTTCCCCTCCAAGGAAAGCTGAGCCCTCACATCGGTAACCTATCTTTCCTCTCCGTCCTTAACCTCACCATCACAAACCTCACGGGCTCAATCCCAGACGATATCGGAAGGCTGCATCGCCTCGAGCTCCTTGATCTTGGCAATAATGCTTTCTCAGGTGTCATCCCAGCCTCCATAGGCAACCTCACGAGGCTTGGCGTTCTTCGTCTCGCGGTCAATCGTCTCACCGGACCGGTACCACCAGGCGTCTTCAACATGTCTATGCTAGGAGTTATTGCTCTTGCCTTGAACGGCTTAACTGGCCCTATCCCAGGCAACGAAAGCTTCAGACTCCCGAGTCTCTGGTTTTTCTCCGTTGATGCCAACAATTTCACCGGTCCGATACCACAGGGGTTTGCGGCGTGCCAGCAACTCCAGGTTTTTTCCCTCATTCAGAACTTATTCGAGGGTGCTTTGCCATCATGGCTGGGCAAGTTGACGAATCTCGTCAAGCTCAACTTGGGTGAGAATCACTTCGATGGTGGTTCAATCCCTGATGCGTTAAGCAACATTACCATGCTGGCTTCCCTAGAGCTCAGCACGTGCAACCTAACAGGAACCATTCCAGCAGATATTGGAAAGCTTGGAAAACTTTCAGATTTGCTTATTGCAAGGAATCAACTAAGAGGACCCATTCCTGCTTCTCTCGGCAACTTATCTGCATTATCACGCCTGGATTTGAGCACAAACCTGTTGGATGGATCTGTCCCAGCAACAGTTGGCAGCATGAACTCTTTGACATACTTTGTTATTTTCGAAAATAGCTTACAAGGGGATCTCAAATTCTTGTCTGCTCTTTCCAACTGTAGGAAGCTTTCTGTCCTTGAAATCGACTCAAATTATTTCACCGGAAACCTCCCAGACTATGTGGGCAATCTATCAAGCACGCTGCAAGCATTCATCGCACGTCGAAACAATATATCCGGTGTCCTTCCATCTACAGTTTGGAACTTAACTAGTCTCAAGTATCTAGATCTTAGTGATAACCAACTGCACAGTACAATATCAGAATCAATCATGGATTTGGAGATACTACAGTGGCTTGATCTCAGTGAAAATAGCTTGTTTGGCCCCATCCCGTCAAATATCGGCGTGCTGAAGAATATTCAAAGATTATTTCTTGGAACAAACCAATTCTCCAGCTCCATATCGATGGGCATTAGTAACATGACCAAGTTAGAATACCTAGATTTATCTGATAACCAACTAGCATCCACTGTACCACCGAGCTTATTTCATCTTGATAGACTTGTTAAACTAGATCTGTCCCACAATTTCTTAAGTGGTGCATTACCGGCTGATATAGGCTATTTGAAGCAAATGAATATCATGGATCTCTCTAGCAACCACTTCACTGGCATCCTCCCAGATTCAATTGAACTTCAAATGATAGCCTACTTGAACCTATCAGTCAATTTATTCCAAAATTCAATTCCAGATTCTTTTCGTGTGCTTACCAGCTTAGAAACTTTGGATCTATCCCACAACAATATTTCCGGTACCATCCCGGAATACCTGGCCAATTTTACTGTCCTTTCCAGCTTGAACCTATCTTTCAACAACCTACATGGTCAAATACCAGAAACAGGTGTCTTCTCAAACATCACGCTGGAATCCTTGGTTGGGAACTCAGGGCTATGTGGTGCTGTCCGTTTAGGATTTTCACCATGCCAAACAACCTCTCCCAAAAAAAACCATCGGATCATAAAATACTTAGTCCCTCCTATAATTATCACAGTTGGAGCTGTAGCTTGCTGCTTATATGTAATTCTTAAATATAAAGTTAAGCATCAAAAGATGTCTGTTGGTATGGTTGACATGGCCAGACATCAACTACTCTCCTACCATGAGCTTGCTCGTGCTACTAATGATTTCAGTGATGATAATATGTTGGGCTCTGGAAGCTTTGGAAAAGTTTTTAAGGGTCAGCTGAGCAGCGGTTTGGTGGTTGCCATAAAAGTTATACACCAACATATGGAACATGCCATTAGAAGCTTTGATACTGAGTGCCGGGTGCTTAGAACGGCTAGGCATCGCAACTTGATAAAGATACTTAACACTTGTTCCAACCAGGACTTCAGAGCACTGGTTCTTGAGTACATGCCCAATGGAAGCTTAGAGGCACTCCTACACTCTTATCAAAGAATTCAATTAAGTTTCCTTGAGCGGTTGGATATTACTCCCTCCGTCCCACAATATAAGGGATTTTGA
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| Protein seq | MAPGSPVCISVSALLLITLSPAVAAAAASPPGRSKSNGSDTDLAALLAFKGELSDPYSLLATNWTAGTPFCRWMGITCSRRQQQRVTGVELPGVPLQGKLSPHIGNLSFLSVLNLTITNLTGSIPDDIGRLHRLELLDLGNNAFSGVIPASIGNLTRLGVLRLAVNRLTGPVPPGVFNMSMLGVIALALNGLTGPIPGNESFRLPSLWFFSVDANNFTGPIPQGFAACQQLQVFSLIQNLFEGALPSWLGKLTNLVKLNLGENHFDGGSIPDALSNITMLASLELSTCNLTGTIPADIGKLGKLSDLLIARNQLRGPIPASLGNLSALSRLDLSTNLLDGSVPATVGSMNSLTYFVIFENSLQGDLKFLSALSNCRKLSVLEIDSNYFTGNLPDYVGNLSSTLQAFIARRNNISGVLPSTVWNLTSLKYLDLSDNQLHSTISESIMDLEILQWLDLSENSLFGPIPSNIGVLKNIQRLFLGTNQFSSSISMGISNMTKLEYLDLSDNQLASTVPPSLFHLDRLVKLDLSHNFLSGALPADIGYLKQMNIMDLSSNHFTGILPDSIELQMIAYLNLSVNLFQNSIPDSFRVLTSLETLDLSHNNISGTIPEYLANFTVLSSLNLSFNNLHGQIPETGVFSNITLESLVGNSGLCGAVRLGFSPCQTTSPKKNHRIIKYLVPPIIITVGAVACCLYVILKYKVKHQKMSVGMVDMARHQLLSYHELARATNDFSDDNMLGSGSFGKVFKGQLSSGLVVAIKVIHQHMEHAIRSFDTECRVLRTARHRNLIKILNTCSNQDFRALVLEYMPNGSLEALLHSYQRIQLSFLERLDITPSVPQYKGF |
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| Function | LRR receptor-like serine/threonine-protein kinase EFR [UniProtKB/Swiss-Prot:C0LGT6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g47160 | LOC_Os11g47160.1 | Chr11 | 28371257 | 28373985 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGCCTGGATCTCCAGTATGCATCAGCGTGTCCGCTCTGCTGTTGATCACTTTGTCCCCTGCGGTTGCTGCTGCTGCTGCTTCTCCTCCAGGGAGGAGCAAGAGCAATGGCAGCGACACCGATCTCGCTGCGCTGCTGGCTTTCAAAGGCGAGCTCTCCGATCCCTACAGCCTTCTTGCCACCAACTGGACTGCTGGCACTCCGTTCTGCCGGTGGATGGGGATCACTTGCAGCCGGCGGCAGCAGCAGCGTGTCACCGGAGTGGAGCTGCCCGGAGTTCCCCTCCAAGGAAAGCTGAGCCCTCACATCGGTAACCTATCTTTCCTCTCCGTCCTTAACCTCACCATCACAAACCTCACGGGCTCAATCCCAGACGATATCGGAAGGCTGCATCGCCTCGAGCTCCTTGATCTTGGCAATAATGCTTTCTCAGGTGTCATCCCAGCCTCCATAGGCAACCTCACGAGGCTTGGCGTTCTTCGTCTCGCGGTCAATCGTCTCACCGGACCGGTACCACCAGGCGTCTTCAACATGTCTATGCTAGGAGTTATTGCTCTTGCCTTGAACGGCTTAACTGGCCCTATCCCAGGCAACGAAAGCTTCAGACTCCCGAGTCTCTGGTTTTTCTCCGTTGATGCCAACAATTTCACCGGTCCGATACCACAGGGGTTTGCGGCGTGCCAGCAACTCCAGGTTTTTTCCCTCATTCAGAACTTATTCGAGGGTGCTTTGCCATCATGGCTGGGCAAGTTGACGAATCTCGTCAAGCTCAACTTGGGTGAGAATCACTTCGATGGTGGTTCAATCCCTGATGCGTTAAGCAACATTACCATGCTGGCTTCCCTAGAGCTCAGCACGTGCAACCTAACAGGAACCATTCCAGCAGATATTGGAAAGCTTGGAAAACTTTCAGATTTGCTTATTGCAAGGAATCAACTAAGAGGACCCATTCCTGCTTCTCTCGGCAACTTATCTGCATTATCACGCCTGGATTTGAGCACAAACCTGTTGGATGGATCTGTCCCAGCAACAGTTGGCAGCATGAACTCTTTGACATACTTTGTTATTTTCGAAAATAGCTTACAAGGGGATCTCAAATTCTTGTCTGCTCTTTCCAACTGTAGGAAGCTTTCTGTCCTTGAAATCGACTCAAATTATTTCACCGGAAACCTCCCAGACTATGTGGGCAATCTATCAAGCACGCTGCAAGCATTCATCGCACGTCGAAACAATATATCCGGTGTCCTTCCATCTACAGTTTGGAACTTAACTAGTCTCAAGTATCTAGATCTTAGTGATAACCAACTGCACAGTACAATATCAGAATCAATCATGGATTTGGAGATACTACAGTGGCTTGATCTCAGTGAAAATAGCTTGTTTGGCCCCATCCCGTCAAATATCGGCGTGCTGAAGAATATTCAAAGATTATTTCTTGGAACAAACCAATTCTCCAGCTCCATATCGATGGGCATTAGTAACATGACCAAGTTAGAATACCTAGATTTATCTGATAACCAACTAGCATCCACTGTACCACCGAGCTTATTTCATCTTGATAGACTTGTTAAACTAGATCTGTCCCACAATTTCTTAAGTGGTGCATTACCGGCTGATATAGGCTATTTGAAGCAAATGAATATCATGGATCTCTCTAGCAACCACTTCACTGGCATCCTCCCAGATTCAATTGAACTTCAAATGATAGCCTACTTGAACCTATCAGTCAATTTATTCCAAAATTCAATTCCAGATTCTTTTCGTGTGCTTACCAGCTTAGAAACTTTGGATCTATCCCACAACAATATTTCCGGTACCATCCCGGAATACCTGGCCAATTTTACTGTCCTTTCCAGCTTGAACCTATCTTTCAACAACCTACATGGTCAAATACCAGAAACAGGTGTCTTCTCAAACATCACGCTGGAATCCTTGGTTGGGAACTCAGGGCTATGTGGTGCTGTCCGTTTAGGATTTTCACCATGCCAAACAACCTCTCCCAAAAAAAACCATCGGATCATAAAATACTTAGTCCCTCCTATAATTATCACAGTTGGAGCTGTAGCTTGCTGCTTATATGTAATTCTTAAATATAAAGTTAAGCATCAAAAGATGTCTGTTGGTATGGTTGACATGGCCAGACATCAACTACTCTCCTACCATGAGCTTGCTCGTGCTACTAATGATTTCAGTGATGATAATATGTTGGGCTCTGGAAGCTTTGGAAAAGTTTTTAAGGGTCAGCTGAGCAGCGGTTTGGTGGTTGCCATAAAAGTTATACACCAACATATGGAACATGCCATTAGAAGCTTTGATACTGAGTGCCGGGTGCTTAGAACGGCTAGGCATCGCAACTTGATAAAGATACTTAACACTTGTTCCAACCAGGACTTCAGAGCACTGGTTCTTGAGTACATGCCCAATGGAAGCTTAGAGGCACTCCTACACTCTTATCAAAGAATTCAATTAAGTTTCCTTGAGCGGTTGGATATTACTCCCTCCGTCCCACAATATAAGGGATTTTGA
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| Protein seq | MAPGSPVCISVSALLLITLSPAVAAAAASPPGRSKSNGSDTDLAALLAFKGELSDPYSLLATNWTAGTPFCRWMGITCSRRQQQRVTGVELPGVPLQGKLSPHIGNLSFLSVLNLTITNLTGSIPDDIGRLHRLELLDLGNNAFSGVIPASIGNLTRLGVLRLAVNRLTGPVPPGVFNMSMLGVIALALNGLTGPIPGNESFRLPSLWFFSVDANNFTGPIPQGFAACQQLQVFSLIQNLFEGALPSWLGKLTNLVKLNLGENHFDGGSIPDALSNITMLASLELSTCNLTGTIPADIGKLGKLSDLLIARNQLRGPIPASLGNLSALSRLDLSTNLLDGSVPATVGSMNSLTYFVIFENSLQGDLKFLSALSNCRKLSVLEIDSNYFTGNLPDYVGNLSSTLQAFIARRNNISGVLPSTVWNLTSLKYLDLSDNQLHSTISESIMDLEILQWLDLSENSLFGPIPSNIGVLKNIQRLFLGTNQFSSSISMGISNMTKLEYLDLSDNQLASTVPPSLFHLDRLVKLDLSHNFLSGALPADIGYLKQMNIMDLSSNHFTGILPDSIELQMIAYLNLSVNLFQNSIPDSFRVLTSLETLDLSHNNISGTIPEYLANFTVLSSLNLSFNNLHGQIPETGVFSNITLESLVGNSGLCGAVRLGFSPCQTTSPKKNHRIIKYLVPPIIITVGAVACCLYVILKYKVKHQKMSVGMVDMARHQLLSYHELARATNDFSDDNMLGSGSFGKVFKGQLSSGLVVAIKVIHQHMEHAIRSFDTECRVLRTARHRNLIKILNTCSNQDFRALVLEYMPNGSLEALLHSYQRIQLSFLERLDITPSVPQYKGF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.066587 | 0.199778 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0691800 | SBH | 0.156598 | 0.000000 | 0.927697 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g46970 | SBH | 0.600322 | 0.124483 | 0.188417 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0691800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024590 | SBH | 0.0 | 5.368335 | 1.046873 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024540 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0024170 | SBH | 0.0 | 0.667104 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0024050 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024390 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0444200 | SBH | 0.024749 | 0.065174 | 0.025844 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024800 | SBH | 0.009890 | 0.000000 | 0.012598 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0442400 | RBH | 0.3193365 | 0 | 0.811963 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024650 | SBH | 0.008922 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024760 | SBH | 0.027641 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024040 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023910 | SBH | 0.018860 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024300 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024300 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017670 | SBH | 0.0 | 0.0 | 0.0 |
