Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g37790 | OGI:11067340 | 13/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:22382419-22384761 | ||||||||
| Gene Symbol | XA39, Xa39, - | ||||||||||
| DNA seq | ATGCTCAAGGAAGAGTATGACTTACAAAAGAATGTGAAGGAGGGGATCAAGTTCCTCAAGGCTGAGCTCGAGAGCATGCAAGCTGCCCTTGAGGATGTCTCGAAGGTGCCGCTAGACCAACTTGCCAAACCAATCAAAATATGGGCTAGGGACATTAGGGAGTTGTCCTACAACATTGAGGACAACATCGATACCTTCATGTTGCGTGTCGATAGTCTTGAACCAAGCAAGAAAAACAAATTCACATGGTTAATTGATGAGTGCAAGAAGTCATTGTCCAAGGTAAAGATTCGCCACAAAATAGCCAATGACATCAAAGATGTTAAGAGCCAAGTCAAGATGGTGATGGAATGCCGCGATAGGTACAACATCAATAATGTGATTGCTAGGCTGCCTACTACTGTTGATCCTCGTATCTTGACACTATATGAGAAGGCCACAAAGCTCATTGGCATTGAGAAGGCAAGTAATGATCTAATCAAGAGGTTGTCAGTGGAGGGCGAGGCATCCAAGAAGCTTAAGATGGTCTCTGTTGTTGGATTTGGAGGATTGGGCAAGACAACTCTTGCTAGAGTAGTGTCTGATATGCTGAAAGAGCAATTTGACTGTGTCGTTTTTGTTCCAATCGGCTAGAAACCTAACATCAAGAATGTTATCAAGGGCATCTTGATTGATCTTAACAAGCACAAATACATGGAATTCGATTCAGCAATACTAAGTGAAAGGCATCTCATTGATGAGCTCCGAGAATATCTTGGAAATAGAAGGTATGAATGCAATCCTTTTAGACAAGGAAGATGAATTATATCCTTGCCTATGCATGCATCTAAGGTACAGACAAACAAAGTCATTATAACTAAAAAAATAAAAGAGTGGGACAAACCCTATAGGAATTAAATTAAGCATAGCAAGAAAGAGAACACAACTTATAAATAATCCGGCATCCAAAGTTGGTGAAGAAGCCCATGATGATCTACTCCGGGTGTGTGGCTCTAGTAGCCATAATATCTTGGTCTGCCTGTTGCTGCATCACATACTAGGTATGGAGCCAGTAGATACACATGAATAAGACTCAATGGAATTAGATGTTTCTTTGTGTAAAAAAACCATGTAAGGATTTTAACTTTTAGGGGAATTCTAATGCTCCATTTGTTCTTCCGACCAATACTTACACTTGAATTCAACAACACATCGCACATTGATTTAATTGTAAATTCTCCGTTCTTATGTGACACCATTTAAAAGAAAGTATATGTATGCAATACCCATAAAACTAATAGTTATTCATGATCTCTATATGCTGATGGGATATTTATTAGCTACTATAGAGTGTTTAATTAGCTGCTGGATGCAGTAGTTGACATCAAGTAAATCTACATTCCTTTATCTAAGGCCTCTTAGAAATTCTTAATGCTAGTACGAGGGGCTAATTTGAGCATTTGATGGGAAAAACAGAAAATGATAGGATTTCTAATATTGTTAGTCGTCGAAGAAGAAAATATTGTTGACCATCTGTGATCACTAGATTACATACTCCACTCATTGCTAGTGCCAGGGGATAATTTGAGTCAAAAGTATTGATTATCAAGCAATTACAATAAAATGAGGATATCATTTATATGCAATTGTTTTAGAAACCCATATTTATTCAATTCAAGAATTGTTGATGTTTTCTTAAGGCACTTCGGATCCATGATGCTTAAGAGTTTGTTTTTTTTTATACAGATATACTCTAGATCATTTTACTAATCCATACCATTTCTACTCTCTTGTCGGTAGGTACTTGATTGTTGTTGATGATATATGGGAGACATCAACATGGAAATTATTAAATGTGCCCTGATTGATAGCAATTGTAGAAGCAGAGTAATCGCAACAACTCGTATCTCTCAAGTTGCTAAAGAAGTTGCTGAAGAGTTTGGTGATATTTACATCATGGAGCCGCTTTCTGAAGATAACTCGAAGAAGTTATTCTACAGCAGAATGTTTGGTGTTAATCACAAAGATGCAGCTGATAATCAATCAATTGAGGTAACTAAAAATATCTTAAAGAAGTGTGGTGGCGTACCATTATCTATAACTACAATAGCTAGTTTGTTGATTGATAAACCTATGGGCGAGTGGTCCACTGTTTATGACTCTATTGGTTTTGGACCGACAGATGAAAATGAGGTAGTTCAAAACACGAGAAAGATATTGTCTTTTAGCTATTATGATATGCCCTCACACTTGAAGACTTGTATGTTGTATCTAAGCATATATCCAGAAGATCATTGGATTGAGAAGGATAGTTTGATATGGAAGTGGATAGCTGAAGGCTTTATCCATGAGGAACAAGGGTAG
More
|
||||||||||
| CDS seq | ATGCTCAAGGAAGAGTATGACTTACAAAAGAATGTGAAGGAGGGGATCAAGTTCCTCAAGGCTGAGCTCGAGAGCATGCAAGCTGCCCTTGAGGATGTCTCGAAGGTGCCGCTAGACCAACTTGCCAAACCAATCAAAATATGGGCTAGGGACATTAGGGAGTTGTCCTACAACATTGAGGACAACATCGATACCTTCATGTTGCGTGTCGATAGTCTTGAACCAAGCAAGAAAAACAAATTCACATGGTTAATTGATGAGTGCAAGAAGTCATTGTCCAAGGTAAAGATTCGCCACAAAATAGCCAATGACATCAAAGATGTTAAGAGCCAAGTCAAGATGGTGATGGAATGCCGCGATAGGTACAACATCAATAATGTGATTGCTAGGCTGCCTACTACTGTTGATCCTCGTATCTTGACACTATATGAGAAGGCCACAAAGCTCATTGGCATTGAGAAGGCAAGTAATGATCTAATCAAGAGGTTGTCAGTGGAGGGCGAGGCATCCAAGAAGCTTAAGATGAAACCTAACATCAAGAATGTTATCAAGGGCATCTTGATTGATCTTAACAAGCACAAATACATGGAATTCGATTCAGCAATACTAAGTGAAAGGCATCTCATTGATGAGCTCCGAGAATATCTTGGAAATAGAAGATATACTCTAGATCATTTTACTAATCCATACCATTTCTACTCTCTTGTCGACATCAACATGGAAATTATTAAATGTGCCCTGATTGATAGCAATTGTAGAAGCAGAGTAATCGCAACAACTCGTATCTCTCAAGTTGCTAAAGAAGTTGCTGAAGAGTTTGGTGATATTTACATCATGGAGCCGCTTTCTGAAGATAACTCGAAGAAGTTATTCTACAGCAGAATGTTTGGTGTTAATCACAAAGATGCAGCTGATAATCAATCAATTGAGGTAACTAAAAATATCTTAAAGAAGTGTGGTGGCGTACCATTATCTATAACTACAATAGCTAGTTTGTTGATTGATAAACCTATGGGCGAGTGGTCCACTGTTTATGACTCTATTGGTTTTGGACCGACAGATGAAAATGAGGTAGTTCAAAACACGAGAAAGATATTGTCTTTTAGCTATTATGATATGCCCTCACACTTGAAGACTTGTATGTTGTATCTAAGCATATATCCAGAAGATCATTGGATTGAGAAGGATAGTTTGATATGGAAGTGGATAGCTGAAGGCTTTATCCATGAGGAACAAGGGTAG
More
|
||||||||||
| Protein seq | MLKEEYDLQKNVKEGIKFLKAELESMQAALEDVSKVPLDQLAKPIKIWARDIRELSYNIEDNIDTFMLRVDSLEPSKKNKFTWLIDECKKSLSKVKIRHKIANDIKDVKSQVKMVMECRDRYNINNVIARLPTTVDPRILTLYEKATKLIGIEKASNDLIKRLSVEGEASKKLKMKPNIKNVIKGILIDLNKHKYMEFDSAILSERHLIDELREYLGNRRYTLDHFTNPYHFYSLVDINMEIIKCALIDSNCRSRVIATTRISQVAKEVAEEFGDIYIMEPLSEDNSKKLFYSRMFGVNHKDAADNQSIEVTKNILKKCGGVPLSITTIASLLIDKPMGEWSTVYDSIGFGPTDENEVVQNTRKILSFSYYDMPSHLKTCMLYLSIYPEDHWIEKDSLIWKWIAEGFIHEEQG |
||||||||||
| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g37790 | LOC_Os11g37790.1 | Chr11 | 22382419 | 22384761 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTCAAGGAAGAGTATGACTTACAAAAGAATGTGAAGGAGGGGATCAAGTTCCTCAAGGCTGAGCTCGAGAGCATGCAAGCTGCCCTTGAGGATGTCTCGAAGGTGCCGCTAGACCAACTTGCCAAACCAATCAAAATATGGGCTAGGGACATTAGGGAGTTGTCCTACAACATTGAGGACAACATCGATACCTTCATGTTGCGTGTCGATAGTCTTGAACCAAGCAAGAAAAACAAATTCACATGGTTAATTGATGAGTGCAAGAAGTCATTGTCCAAGGTAAAGATTCGCCACAAAATAGCCAATGACATCAAAGATGTTAAGAGCCAAGTCAAGATGGTGATGGAATGCCGCGATAGGTACAACATCAATAATGTGATTGCTAGGCTGCCTACTACTGTTGATCCTCGTATCTTGACACTATATGAGAAGGCCACAAAGCTCATTGGCATTGAGAAGGCAAGTAATGATCTAATCAAGAGGTTGTCAGTGGAGGGCGAGGCATCCAAGAAGCTTAAGATGAAACCTAACATCAAGAATGTTATCAAGGGCATCTTGATTGATCTTAACAAGCACAAATACATGGAATTCGATTCAGCAATACTAAGTGAAAGGCATCTCATTGATGAGCTCCGAGAATATCTTGGAAATAGAAGATATACTCTAGATCATTTTACTAATCCATACCATTTCTACTCTCTTGTCGACATCAACATGGAAATTATTAAATGTGCCCTGATTGATAGCAATTGTAGAAGCAGAGTAATCGCAACAACTCGTATCTCTCAAGTTGCTAAAGAAGTTGCTGAAGAGTTTGGTGATATTTACATCATGGAGCCGCTTTCTGAAGATAACTCGAAGAAGTTATTCTACAGCAGAATGTTTGGTGTTAATCACAAAGATGCAGCTGATAATCAATCAATTGAGGTAACTAAAAATATCTTAAAGAAGTGTGGTGGCGTACCATTATCTATAACTACAATAGCTAGTTTGTTGATTGATAAACCTATGGGCGAGTGGTCCACTGTTTATGACTCTATTGGTTTTGGACCGACAGATGAAAATGAGGTAGTTCAAAACACGAGAAAGATATTGTCTTTTAGCTATTATGATATGCCCTCACACTTGAAGACTTGTATGTTGTATCTAAGCATATATCCAGAAGATCATTGGATTGAGAAGGATAGTTTGATATGGAAGTGGATAGCTGAAGGCTTTATCCATGAGGAACAAGGGTAG
More
|
|||||||
| Protein seq | MLKEEYDLQKNVKEGIKFLKAELESMQAALEDVSKVPLDQLAKPIKIWARDIRELSYNIEDNIDTFMLRVDSLEPSKKNKFTWLIDECKKSLSKVKIRHKIANDIKDVKSQVKMVMECRDRYNINNVIARLPTTVDPRILTLYEKATKLIGIEKASNDLIKRLSVEGEASKKLKMKPNIKNVIKGILIDLNKHKYMEFDSAILSERHLIDELREYLGNRRYTLDHFTNPYHFYSLVDINMEIIKCALIDSNCRSRVIATTRISQVAKEVAEEFGDIYIMEPLSEDNSKKLFYSRMFGVNHKDAADNQSIEVTKNILKKCGGVPLSITTIASLLIDKPMGEWSTVYDSIGFGPTDENEVVQNTRKILSFSYYDMPSHLKTCMLYLSIYPEDHWIEKDSLIWKWIAEGFIHEEQG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0589800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0589800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018800 | SBH | 0.0 | 2.681500 | 1.106877 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018890 | SBH | 0.083474 | 0.000000 | 0.872841 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019510 | RBH | 0.483293 | 2.652587 | 3.327611 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018430 | RBH | 0.0 | 0.008935 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019600 | RBH | 1.072494 | 3.071952 | 7.526863 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0354400 | RBH | 3.5851255 | 4.095482 | 8.350278 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020060 | RBH | 0.099127 | 0.273639 | 0.621422 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0358000 | SBH | 0.4338155 | 4.4828455 | 0.036291 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019080 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019220 | SBH | 0.039728 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018740 | RBH | 0.0 | 4.139428 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018470 | SBH | 0.619366 | 0.0 | 0.136617 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0019340 | RBH | 0.000000 | 1.212775 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018730 | SBH | 0.222103 | 2.844661 | 3.268044 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019000 | RBH | 0.085491 | 1.135887 | 0.549001 |
