Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0019340 | OGI:11067340 | 13/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:25195042-25198575 | ||||||||
| Gene Symbol | XA39, Xa39, - | ||||||||||
| DNA seq | gaacaaaatgcaaaaccttccctccaagaaagatcaaattaaatttaagcacgtacggattttttttcattcttcccagaatgaagttcaatcatggatagaaaatgtaaatactgtggctgtatatataactctataacaaatgctccacatttaatcacacatagcgaagccagtgacgcctagacggttggggtgggcatcaatctctcgctccaaagccacctccgtttgcttcacctgactggccgtcgcacccttgcagttgatgtaaacaccaaccgtctcgagcattgacaggttccccaagccaacgacgtcattggcagcaccatcctccctgcacgccagcacgccgaatttgacagccatgagcatcggcatcgctccccgcagaaacgtgagctcaatgttggtggcgcagcgtctcagcttcaggaacaatccgtcaccaccgtggacggtccatgaaaacctctcctcgacgtacacgccgaggaagaggagcatgggcatcctcgcgaggatgtccaggtcccgtgcttccacggccgaaagagtaaggtctaggcaggaaagccgcggaacgatggtggagttcacccacgcgggcagccgaggcaggcaggtaccgtccacagagaagtggcagacctgccgcggtggctcccagccttgccagctgctcagcacggccgtcgtacggcacgagagatcaaggtactggattctgcgcagggtgtggatagactccaccagagcgccgagggaggccgtgcgctcaaccatctcgatcccaaacacatcaatgtcgagctcgagcatccttaggtcggtcagtttgcacagctccagagcgaaacttcgcaagctctcggcagataggctcagctgcagttgctgcaggaacgtcagcttcccaacactggccagcattcttgtgctgccgttggagcgcagggccatcaattggcttagttcgctaactgtcgctggcagtgccaccaagtcagtgtccctaacgtccagtacctgcaggtgaacgagatcccgcagtgttttgcttgggagctcaacaacacgtgtatttctcagcccaaggtacctcaactgaagcagcttcccaagatgcttcagtttacagcctcctgtgacatcacaaccttccagcgctaacacacgtagaacctggaatctcgcaggcaggggaatcatgctaatagggcactcaatggcattgaatgacctcagctgctgctccatgcccatcgccggattattgtttttatgctggttccaactcttatgcagtgctagcctacggactgatctgcaatgcgaagatgagttgtgctcctcatgtgctctatccaatatttttacaaagttctcttcttttgccgacatgcggatgaggtccagcaccatgtcatggatgtgacaaccactaatagtgccaaggtagtatgtgtcttctattggctggatcatgcttttgttgataagctcgatgaagtacctctcaccaacctcgaatagccctttcccttgttcctcatggacaaacccttcagctacccacttccatatcaaacaatttttatcgatccgatgatcttctggatatatgcttagatgcaacatacaagtctttaggtataaaggcagatcgtaataactaaaagacaatatcttcctagtgttatgaactacttcattttgatctgcaaccccaaaaccgatggagtcataaactgctgaccactcctccactggtttataaaccaacaaacttgcgattgtaattatagacaatggtacgccaccgcatttctttaagatcttctcagttgcctcaaccaattgattatcggctggacctttgcaatcagcaccaaatattctgctatagaataacttttttgagttatcgtcagaaagtggctccatgatgtgaacatcaccatcttcttcagcaacttgtttggcaacctcaaaaatacgagttgttgtgattactttgcttccgcaattactatcaaccaaagcacatttaataaatttccatgttgatgtctcccaaacgtcatcaacaacaatcaaatacctaatgatatgggaatagaggagggatggattagtgaatgaactagagtatatgtttacaaataataagcaaacatcatgaatccaaagaggcataggcaatcatcaacaggtaattcgatgaggagataaaattccctcgtgcaatctcatttttcagtctcaaagtgaatttaatatgagtgcataaaaacatttatgtataaatgagtttaccattttattactctatatgcttttgaatcaatatgttttagattgaattgctcactcgcactggcaataggtggattaatgtggcgatattaaatagtcaagatctttcttcttctacgaataatgtgaggaattcctaccattttttgtttctcttgtctaatgccaaactttctttcttttccaactaaagtgagggtttcttaaagagactcaagttagtaaaggtaaataaagatggataaagatctacataccaccgatacagatttacttaatatacaactaccacaaccatcagctactaaaacactcatcaggtagccaataaaactcccatcggcatacacagatcatgaagaacaattagttttgttgggtaatgcatacatacctcttattgtcaagatagtctcggagctcatcaatgagatgcctttcatttagtgctgccacatcgaaaaccatgtacttttccttgtcaaattcaatcaggatgtccttgagaactttctttatgttagggttctgaccgaccggaacaaaaccggtacattcaaattgtgctttaagcatgtcgaacactactttggcaagggtcgtcttgcccaatcctccaagtccaacaacagagaccatcttgagcttcttggatgcctcatcccccacggacaacctcttgtttagatcattaattaacttatcaatgccaacaagcttagtggccttctcatataatgtaaagatgcgagggtcaacaaccgttggaagcttaaaagcaatatcatcaactttgtacctatcacggcgttccatcacttccttcacttggttcttgacatcattgatgttgttggctattttgtggtggatctttatcttggacaaggaattgtggcacttatcgattagccatgtgaaattatgtttcttggttggctcaaggctgttgacacgcagcatgaaggtgtcgatgttatcctcaatgttgtaggacaactccctaacgtccatagcccacatcttgatttgcttgtcaagctggtctagtggcacatttgagaccttctcgagggcagcttgcatgctctcgagctcagcctttaggaacctaatcccctccttcacactcttctgcaggtcatactcttccttgagtaggtcacccagcttagggagtagtgtgtgcattgcccctgtggcgaactccat
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| CDS seq | atggagttcgccacaggggcaatgcacacactactccctaagctgggtgacctactcaaggaagagtatgacctgcagaagagtgtgaaggaggggattaggttcctaaaggctgagctcgagagcatgcaagctgccctcgagaaggtctcaaatgtgccactagaccagcttgacaagcaaatcaagatgtgggctatggacgttagggagttgtcctacaacattgaggataacatcgacaccttcatgctgcgtgtcaacagccttgagccaaccaagaaacataatttcacatggctaatcgataagtgccacaattccttgtccaagataaagatccaccacaaaatagccaacaacatcaatgatgtcaagaaccaagtgaaggaagtgatggaacgccgtgataggtacaaagttgatgatattgcttttaagcttccaacggttgttgaccctcgcatctttacattatatgagaaggccactaagcttgttggcattgataagttaattaatgatctaaacaagaggttgtccgtgggggatgaggcatccaagaagctcaagatggtctctgttgttggacttggaggattgggcaagacgacccttgccaaagtagtgttcgacatgcttaaagcacaatttgaatgtaccggttttgttccggtcggtcagaaccctaacataaagaaagttctcaaggacatcctgattgaatttgacaaggaaaagtacatggttttcgatgtggcagcactaaatgaaaggcatctcattgatgagctccgagactatcttgacaataagaggtatttgattgttgttgatgacgtttgggagacatcaacatggaaatttattaaatgtgctttggttgatagtaattgcggaagcaaagtaatcacaacaactcgtatttttgaggttgccaaacaagttgctgaagaagatggtgatgttcacatcatggagccactttctgacgataactcaaaaaagttattctatagcagaatatttggtgctgattgcaaaggtccagccgataatcaattggttgaggcaactgagaagatcttaaagaaatgcggtggcgtaccattgtctataattacaatcgcaagtttgttggtttataaaccagtggaggagtggtcagcagtttatgactccatcggttttggggttgcagatcaaaatgaagtagttcataacactaggaagatattgtcttttagttattacgatctgcctttatacctaaagacttgtatgttgcatctaagcatatatccagaagatcatcggatcgataaaaattgtttgatatggaagtgggtagctgaagggtttgtccatgaggaacaagggaaagggctattcgaggttggtgagaggtacttcatcgagcttatcaacaaaagcatgatccagccaatagaagacacatactaccttggcactattagtggttgtcacatccatgacatggtgctggacctcatccgcatgtcggcaaaagaagagaactttgtaaaaatattggatagagcacatgaggagcacaactcatcttcgcattgcagatcagtccgtaggctagcactgcataagagttggaaccagcataaaaacaataatccggcgatgggcatggagcagcagctgaggtcattcaatgccattgagtgccctattagcatgattcccctgcctgcgagattccaggttctacgtgtgttagcgctggaaggttgtgatgtcacaggaggctgtaaactgaagcatcttgggaagctgcttcagttgaggtaccttgggctgagaaatacacgtgttgttgagctcccaagcaaaacactgcgggatctcgttcacctgcaggtactggacgttagggacactgacttggtggcactgccagcgacagttagcgaactaagccaattgatggccctgcgctccaacggcagcacaagaatgctggccagtgttgggaagctgacgttcctgcagcaactgcagctgagcctatctgccgagagcttgcgaagtttcgctctggagctgtgcaaactgaccgacctaaggatgctcgagctcgacattgatgtgtttgggatcgagatggttgagcgcacggcctccctcggcgctctggtggagtctatccacaccctgcgcagaatccagtaccttgatctctcgtgccgtacgacggccgtgctgagcagctggcaaggctgggagccaccgcggcaggtctgccacttctctgtggacggtacctgcctgcctcggctgcccgcgtgggtgaactccaccatcgttccgcggctttcctgcctagaccttactctttcggccgtggaagcacgggacctggacatcctcgcgaggatgcccatgctcctcttcctcggcgtgtacgtcgaggagaggttttcatggaccgtccacggtggtgacggattgttcctgaagctgagacgctgcgccaccaacattgagctcacgtttctgcggggagcgatgccgatgctcatggctgtcaaattcggcgtgctggcgtgcagggaggatggtgctgccaatgacgtcgttggcttggggaacctgtcaatgctcgagacggttggtgtttacatcaactgcaagggtgcgacggccagtcaggtgaagcaaacggaggtggctttggagcgagagattgatgcccaccccaaccgtctaggcgtcactggcttcgctatgtgtgattaa
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| Protein seq | MEFATGAMHTLLPKLGDLLKEEYDLQKSVKEGIRFLKAELESMQAALEKVSNVPLDQLDKQIKMWAMDVRELSYNIEDNIDTFMLRVNSLEPTKKHNFTWLIDKCHNSLSKIKIHHKIANNINDVKNQVKEVMERRDRYKVDDIAFKLPTVVDPRIFTLYEKATKLVGIDKLINDLNKRLSVGDEASKKLKMVSVVGLGGLGKTTLAKVVFDMLKAQFECTGFVPVGQNPNIKKVLKDILIEFDKEKYMVFDVAALNERHLIDELRDYLDNKRYLIVVDDVWETSTWKFIKCALVDSNCGSKVITTTRIFEVAKQVAEEDGDVHIMEPLSDDNSKKLFYSRIFGADCKGPADNQLVEATEKILKKCGGVPLSIITIASLLVYKPVEEWSAVYDSIGFGVADQNEVVHNTRKILSFSYYDLPLYLKTCMLHLSIYPEDHRIDKNCLIWKWVAEGFVHEEQGKGLFEVGERYFIELINKSMIQPIEDTYYLGTISGCHIHDMVLDLIRMSAKEENFVKILDRAHEEHNSSSHCRSVRRLALHKSWNQHKNNNPAMGMEQQLRSFNAIECPISMIPLPARFQVLRVLALEGCDVTGGCKLKHLGKLLQLRYLGLRNTRVVELPSKTLRDLVHLQVLDVRDTDLVALPATVSELSQLMALRSNGSTRMLASVGKLTFLQQLQLSLSAESLRSFALELCKLTDLRMLELDIDVFGIEMVERTASLGALVESIHTLRRIQYLDLSCRTTAVLSSWQGWEPPRQVCHFSVDGTCLPRLPAWVNSTIVPRLSCLDLTLSAVEARDLDILARMPMLLFLGVYVEERFSWTVHGGDGLFLKLRRCATNIELTFLRGAMPMLMAVKFGVLACREDGAANDVVGLGNLSMLETVGVYINCKGATASQVKQTEVALEREIDAHPNRLGVTGFAMCD |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0019340 | OsLaMu_11g0019340.01 | Chr11 | 25195042 | 25198575 | - | NAM | ||
| CDS seq | atggagttcgccacaggggcaatgcacacactactccctaagctgggtgacctactcaaggaagagtatgacctgcagaagagtgtgaaggaggggattaggttcctaaaggctgagctcgagagcatgcaagctgccctcgagaaggtctcaaatgtgccactagaccagcttgacaagcaaatcaagatgtgggctatggacgttagggagttgtcctacaacattgaggataacatcgacaccttcatgctgcgtgtcaacagccttgagccaaccaagaaacataatttcacatggctaatcgataagtgccacaattccttgtccaagataaagatccaccacaaaatagccaacaacatcaatgatgtcaagaaccaagtgaaggaagtgatggaacgccgtgataggtacaaagttgatgatattgcttttaagcttccaacggttgttgaccctcgcatctttacattatatgagaaggccactaagcttgttggcattgataagttaattaatgatctaaacaagaggttgtccgtgggggatgaggcatccaagaagctcaagatggtctctgttgttggacttggaggattgggcaagacgacccttgccaaagtagtgttcgacatgcttaaagcacaatttgaatgtaccggttttgttccggtcggtcagaaccctaacataaagaaagttctcaaggacatcctgattgaatttgacaaggaaaagtacatggttttcgatgtggcagcactaaatgaaaggcatctcattgatgagctccgagactatcttgacaataagaggtatttgattgttgttgatgacgtttgggagacatcaacatggaaatttattaaatgtgctttggttgatagtaattgcggaagcaaagtaatcacaacaactcgtatttttgaggttgccaaacaagttgctgaagaagatggtgatgttcacatcatggagccactttctgacgataactcaaaaaagttattctatagcagaatatttggtgctgattgcaaaggtccagccgataatcaattggttgaggcaactgagaagatcttaaagaaatgcggtggcgtaccattgtctataattacaatcgcaagtttgttggtttataaaccagtggaggagtggtcagcagtttatgactccatcggttttggggttgcagatcaaaatgaagtagttcataacactaggaagatattgtcttttagttattacgatctgcctttatacctaaagacttgtatgttgcatctaagcatatatccagaagatcatcggatcgataaaaattgtttgatatggaagtgggtagctgaagggtttgtccatgaggaacaagggaaagggctattcgaggttggtgagaggtacttcatcgagcttatcaacaaaagcatgatccagccaatagaagacacatactaccttggcactattagtggttgtcacatccatgacatggtgctggacctcatccgcatgtcggcaaaagaagagaactttgtaaaaatattggatagagcacatgaggagcacaactcatcttcgcattgcagatcagtccgtaggctagcactgcataagagttggaaccagcataaaaacaataatccggcgatgggcatggagcagcagctgaggtcattcaatgccattgagtgccctattagcatgattcccctgcctgcgagattccaggttctacgtgtgttagcgctggaaggttgtgatgtcacaggaggctgtaaactgaagcatcttgggaagctgcttcagttgaggtaccttgggctgagaaatacacgtgttgttgagctcccaagcaaaacactgcgggatctcgttcacctgcaggtactggacgttagggacactgacttggtggcactgccagcgacagttagcgaactaagccaattgatggccctgcgctccaacggcagcacaagaatgctggccagtgttgggaagctgacgttcctgcagcaactgcagctgagcctatctgccgagagcttgcgaagtttcgctctggagctgtgcaaactgaccgacctaaggatgctcgagctcgacattgatgtgtttgggatcgagatggttgagcgcacggcctccctcggcgctctggtggagtctatccacaccctgcgcagaatccagtaccttgatctctcgtgccgtacgacggccgtgctgagcagctggcaaggctgggagccaccgcggcaggtctgccacttctctgtggacggtacctgcctgcctcggctgcccgcgtgggtgaactccaccatcgttccgcggctttcctgcctagaccttactctttcggccgtggaagcacgggacctggacatcctcgcgaggatgcccatgctcctcttcctcggcgtgtacgtcgaggagaggttttcatggaccgtccacggtggtgacggattgttcctgaagctgagacgctgcgccaccaacattgagctcacgtttctgcggggagcgatgccgatgctcatggctgtcaaattcggcgtgctggcgtgcagggaggatggtgctgccaatgacgtcgttggcttggggaacctgtcaatgctcgagacggttggtgtttacatcaactgcaagggtgcgacggccagtcaggtgaagcaaacggaggtggctttggagcgagagattgatgcccaccccaaccgtctaggcgtcactggcttcgctatgtgtgattaa
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| Protein seq | MEFATGAMHTLLPKLGDLLKEEYDLQKSVKEGIRFLKAELESMQAALEKVSNVPLDQLDKQIKMWAMDVRELSYNIEDNIDTFMLRVNSLEPTKKHNFTWLIDKCHNSLSKIKIHHKIANNINDVKNQVKEVMERRDRYKVDDIAFKLPTVVDPRIFTLYEKATKLVGIDKLINDLNKRLSVGDEASKKLKMVSVVGLGGLGKTTLAKVVFDMLKAQFECTGFVPVGQNPNIKKVLKDILIEFDKEKYMVFDVAALNERHLIDELRDYLDNKRYLIVVDDVWETSTWKFIKCALVDSNCGSKVITTTRIFEVAKQVAEEDGDVHIMEPLSDDNSKKLFYSRIFGADCKGPADNQLVEATEKILKKCGGVPLSIITIASLLVYKPVEEWSAVYDSIGFGVADQNEVVHNTRKILSFSYYDLPLYLKTCMLHLSIYPEDHRIDKNCLIWKWVAEGFVHEEQGKGLFEVGERYFIELINKSMIQPIEDTYYLGTISGCHIHDMVLDLIRMSAKEENFVKILDRAHEEHNSSSHCRSVRRLALHKSWNQHKNNNPAMGMEQQLRSFNAIECPISMIPLPARFQVLRVLALEGCDVTGGCKLKHLGKLLQLRYLGLRNTRVVELPSKTLRDLVHLQVLDVRDTDLVALPATVSELSQLMALRSNGSTRMLASVGKLTFLQQLQLSLSAESLRSFALELCKLTDLRMLELDIDVFGIEMVERTASLGALVESIHTLRRIQYLDLSCRTTAVLSSWQGWEPPRQVCHFSVDGTCLPRLPAWVNSTIVPRLSCLDLTLSAVEARDLDILARMPMLLFLGVYVEERFSWTVHGGDGLFLKLRRCATNIELTFLRGAMPMLMAVKFGVLACREDGAANDVVGLGNLSMLETVGVYINCKGATASQVKQTEVALEREIDAHPNRLGVTGFAMCD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 1.212775 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0588600 | SBH | 7.568878 | 7.147371 | 7.533903 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g37790 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0588600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018860 | SBH | 0.033359 | 2.025336 | 0.335204 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018960 | SBH | 0.0 | 1.094639 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019510 | RBH | 0.483293 | 2.652587 | 3.327611 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018310 | SBH | 0.000000 | 0.310080 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019600 | RBH | 1.072494 | 3.071952 | 7.526863 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0354400 | RBH | 3.5851255 | 4.095482 | 8.350278 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020060 | RBH | 0.099127 | 0.273639 | 0.621422 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0358000 | SBH | 0.4338155 | 4.4828455 | 0.036291 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019860 | RBH | 0.042528 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020060 | RBH | 0.187078 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019520 | RBH | 0.000000 | 8.534792 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0019260 | RBH | 0.459692 | 0.0 | 0.369805 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018790 | SBH | 0.000000 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019010 | SBH | 0.0 | 0.0 | 0.000000 |
