Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g11950 | OGI:11019820 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:6631958-6634662 | ||||||||
| Gene Symbol | YR5 | ||||||||||
| DNA seq | CTAAACACGAATCTCTGGAACATGCTGCATCTTCTGATGCATTCTGTTTTTGTGCCATTGAGTTTTGAAGTCCCTGTGCAGGTACAGAAGCCAGAGCTTCTTCAGGGTCCGAAGGGACTCAATGCCCTCAGGGACTATATCCAGCTTTGAGAGTGACACAACGTACAAACCTTCAATGGATGGAAGTGCCCCATCCATGATCTTTAGCTGGTTCACATTGGGCATGTGCTTTAAGACAAGTGTCTTCAGGTGGGGAAAAGACTGTAGAAAGAACCAAAATGTTTGCACTATGCATGTTGTTCAGTCTCAAATAAGTGAGGTTCGGCAAATGCGAAGCGAGCATCCCTAGTGGATCTTCACCAAGATGACACCAACTTAGAGCTAGATATTTAAGATTTGTGCCGTTCCCGTGAAATATTGGGCAATCAAGTGTACCCTTAGCCCATCGCCCTCTGATGATTAGTCTGTGGAGTTCTGTTGACCTTGGCCTAAGAGCCTCGAAGCAGAGTTCCTCATTTTCATCTTTTGCAGAAAGAAGCAAGCTGGAAAGAAATAGCGAAAATATTTGCACAATCAGCAGAACTTATGTTGTCAATCCACACACTTCTTAGTTGCATCAATTTCTTCAGTTGCTCAGCCAGGTCTTTGCTAGACTCCACAGTTTCTAGAGTCTGCAGCTCTTGCAAGTTGGAAAGTTCTTTAGGGGCATGCATTCCAACAAAGTACCGGAAATCTGACTGCCTCTCATCAACGTATCTATCGGCTATAAGGTGTCTTAGCTTCTTGATCTTAACAATACTTCGTGGTAGCTTCTCAATTTTGGTTTGCTTGATGTCAAGCGTGTGGAGGTTAGATAACTTTCCAATAGACTCCGGAAGTGATTTGACTTTGGTGCGTCGTAAGCCAATGTAACGTAGATTAAACATATTCCCAATAGAAGTCGGCACTTCAGTAATCTCTGAGTCTTGCAGCTCAAGAACTGTAAGGTAGCTAGATCCACACAAAATTGAGGATAACATCTCAAGGGGCAATGAGGTTGTCGAAAGTGAGATCAGGGTCCGAAGGCGCATGAATTTAACTGTTGATACAGTATCATCACTCCATCCACATGTTGACAAGCGACGAACTTCCTTATCCATAAGCAACATTGTGCCAAGATCATTGGCTGAACCAAACCTCTCCTCTTTAGCAATAGAAAGAGCCAATACACGCACAATGTCATGCATCTTACAGGAGTTTACCCTGCCAATCTCATCATTGTCCACAACTTCCAGCATATTCCGGTGGATCAGTTCCATAAGGTTTCCCTCTGCGACATCCTCTAGCGTGTTCTTTTCTTTGCCTAGCACAAAGCCTTCTGCAACCCACAACCTCAGAAGGCTCTCCCGTGTCATTGTGTAGTCTTCAGGGAACAAGCTACAGTACAAGAAGCAATTTCTGAGGTCTCCTGATAGGTCATGGTAGCTCAAATTTAGAATTGCTCGGACATGATCATTGTTTGCTAGCTCAGTCCGAAGCTGTTTGTATATTTTATTCCAAACAAATTCTGCTGCTGGTCTTGAAGACAGAAGGCTTCCTATCGTTACAATTGCTAGTGGTAGGCCATGACACCTATCCACTATAGAATTAGCAACCTTCTCTAGCTCCTTGGGGCATTTGTGGCCCTTGTTATAGAAAGCCCTTCTACAGAAGAGTTCAAATGCATCAGCGCCATTCAAAGGCTGGAGGTTGAGACGGCGTGTTGAGGTAGCAAGGGCTGCAACATCATTCTCTCGAGTTGTGATGATGACTCGAGTTGCTTGAAGATTCTGGAATGCATCTTGCATCTGAAAGTACACTTTTTTGTCCCAGACATCATCCAGCACAATCAAACATTTGCTATCTTCAATCTTTTTCTTAATTTCTTCTTTCAGGTCATGTGCATCCATATTGTTCAAGCTATCAAGTGACAGTTCAGTAGACCCAATCTTTCTAAGGAGCTTTCTTAATAGAGCCTCCACATTGTAGGTCTGGGAGACAACAATCCATGCATGAGCAGCAAAGTTGACCTTTTCACGCTCATAAACATTTGTGACTAATGTGGTTTTTCCCAACCCACCTATACCAGATACTGTTATCACTGCTCTATCTGGCTCATCAGAGTACAACCATCCAGCCAGCAATCTCTTGTGGTCTTCAATCCCCACAAGATCTTCATCTTTGACAAGATATGGGAAGTTGTCGTGAGACCGTGGTCTGCCAGTCTCAGCAAGCTGGTTGGGATTGAGCTGGGAAGGGTGCAACCACTGCTCTTTAAGCTTTATAACTTGCTGGATTTGCTTCTCTAACTTGACTACCTCCTCAGCAATATCACTAAATACCACGACTTAATGAGAACCTTTAACGAAGTACTTCTTCAAGAAACCTTCTTCCTCAAGTTGAATAGCATGATATGAGTACTTGTCCATTACGTCCTCAACATGGTAGGCTAACTTTCTCACCTCTGCAATCCAATTCTTTACAACTATACCAGTGAGGTATGAGGTGCCTATCTGTAGTATAACACTGTTCATGATTGTCAGTTGCTTCCTTATTTCCTCGACCTTCTCTGGCATCTCCTTCAAATTAGTAACCTTTTCAGACACCTTGGCAATGACAGCGTTGGCAGCTTCATCTGCTAACACGTTGCCAACCTTTTTGACAGAAAGGAGCACTGCCTCAGCCAT
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| CDS seq | ATGGCTGAGGCAGTGCTCCTTTCTGTCAAAAAGGTTGGCAACGTGTTAGCAGATGAAGCTGCCAACGCTGTCATTGCCAAGGTGTCTGAAAAGGTTACTAATTTGAAGGAGATGCCAGAGAAGGTCGAGGAAATAAGGAAGCAACTGACAATCATGAACAGTGTTATACTACAGATAGGCACCTCATACCTCACTGGTATAGTTGTAAAGAATTGGATTGCAGAGGTGAGAAAGTTAGCCTACCATGTTGAGGACGTAATGGACAAGTACTCATATCATGCTATTCAACTTGAGGAAGAAGGTTTCTTGAAGAATGATATTGCTGAGGAGGTAGTCAAGTTAGAGAAGCAAATCCAGCAAGTTATAAAGCTTAAAGAGCAGTGGTTGCACCCTTCCCAGCTCAATCCCAACCAGCTTGCTGAGACTGGCAGACCACGGTCTCACGACAACTTCCCATATCTTGTCAAAGATGAAGATCTTGTGGGGATTGAAGACCACAAGAGATTGCTGGCTGGATGGTTGTACTCTGATGAGCCAGATAGAGCAGTGATAACAGTATCTGGTATAGGTGGGTTGGGAAAAACCACATTAGTCACAAATGTTTATGAGCGTGAAAAGGTCAACTTTGCTGCTCATGCATGGATTGTTGTCTCCCAGACCTACAATGTGGAGGCTCTATTAAGAAAGCTCCTTAGAAAGATTGGGTCTACTGAACTGTCACTTGATAGCTTGAACAATATGGATGCACATGACCTGAAAGAAGAAATTAAGAAAAAGATTGAAGATAGCAAATGTTTGATTGTGCTGGATGATGTCTGGGACAAAAAAGTGTACTTTCAGATGCAAGATGCATTCCAGAATCTTCAAGCAACTCGAGTCATCATCACAACTCGAGAGAATGATGTTGCAGCCCTTGCTACCTCAACACGCCGTCTCAACCTCCAGCCTTTGAATGGCGCTGATGCATTTGAACTCTTCTGTAGAAGGGCTTTCTATAACAAGGGCCACAAATGCCCCAAGGAGCTAGAGAAGGTTGCTAATTCTATAGTGGATAGGTGTCATGGCCTACCACTAGCAATTGTAACGATAGGAAGCCTTCTGTCTTCAAGACCAGCAGCAGAATTTGTTTGGAATAAAATATACAAACAGCTTCGGACTGAGCTAGCAAACAATGATCATGTCCGAGCAATTCTAAATTTGAGCTACCATGACCTATCAGGAGACCTCAGAAATTGCTTCTTGTACTGTAGCTTGTTCCCTGAAGACTACACAATGACACGGGAGAGCCTTCTGAGGTTGTGGGTTGCAGAAGGCTTTGTGCTAGGCAAAGAAAAGAACACGCTAGAGGATGTCGCAGAGGGAAACCTTATGGAACTGATCCACCGGAATATGCTGGAAGTTGTGGACAATGATGAGATTGGCAGGGTAAACTCCTGTAAGATGCATGACATTGTGCGTGTATTGGCTCTTTCTATTGCTAAAGAGGAGAGGTTTGGTTCAGCCAATGATCTTGGCACAATGTTGCTTATGGATAAGGAAGTTCGTCGCTTGTCAACATGTGGATGGAGTGATGATACTGTATCAACAGTTAAATTCATGCGCCTTCGGACCCTGATCTCACTTTCGACAACCTCATTGCCCCTTGAGATGTTATCCTCAATTTTGTGTGGATCTAGCTACCTTACAGTTCTTGAGCTGCAAGACTCAGAGATTACTGAAGTGCCGACTTCTATTGGGAATATGTTTAATCTACGTTACATTGGCTTACGACGCACCAAAGTCAAATCACTTCCGGAGTCTATTGGAAAGTTATCTAACCTCCACACGCTTGACATCAAGCAAACCAAAATTGAGAAGCTACCACGAAGTATTGTTAAGATCAAGAAGCTAAGACACCTTATAGCCGATAGATACGTTGATGAGAGGCAGTCAGATTTCCGGTACTTTGTTGGAATGCATGCCCCTAAAGAACTTTCCAACTTGCAAGAGCTGCAGACTCTAGAAACTGTGGAGTCTAGCAAAGACCTGGCTGAGCAACTGAAGAAATTGATGCAACTAAGAAGTTCTTTTCCCCACCTGAAGACACTTGTCTTAAAGCACATGCCCAATGTGAACCAGCTAAAGATCATGGATGGGGCACTTCCATCCATTGAAGGTTTGTACGTTGTGTCACTCTCAAAGCTGGATATAGTCCCTGAGGGCATTGAGTCCCTTCGGACCCTGAAGAAGCTCTGGCTTCTGTACCTGCACAGGGACTTCAAAACTCAATGGCACAAAAACAGAATGCATCAGAAGATGCAGCATGTTCCAGAGATTCGTGTTTAG
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| Protein seq | MAEAVLLSVKKVGNVLADEAANAVIAKVSEKVTNLKEMPEKVEEIRKQLTIMNSVILQIGTSYLTGIVVKNWIAEVRKLAYHVEDVMDKYSYHAIQLEEEGFLKNDIAEEVVKLEKQIQQVIKLKEQWLHPSQLNPNQLAETGRPRSHDNFPYLVKDEDLVGIEDHKRLLAGWLYSDEPDRAVITVSGIGGLGKTTLVTNVYEREKVNFAAHAWIVVSQTYNVEALLRKLLRKIGSTELSLDSLNNMDAHDLKEEIKKKIEDSKCLIVLDDVWDKKVYFQMQDAFQNLQATRVIITTRENDVAALATSTRRLNLQPLNGADAFELFCRRAFYNKGHKCPKELEKVANSIVDRCHGLPLAIVTIGSLLSSRPAAEFVWNKIYKQLRTELANNDHVRAILNLSYHDLSGDLRNCFLYCSLFPEDYTMTRESLLRLWVAEGFVLGKEKNTLEDVAEGNLMELIHRNMLEVVDNDEIGRVNSCKMHDIVRVLALSIAKEERFGSANDLGTMLLMDKEVRRLSTCGWSDDTVSTVKFMRLRTLISLSTTSLPLEMLSSILCGSSYLTVLELQDSEITEVPTSIGNMFNLRYIGLRRTKVKSLPESIGKLSNLHTLDIKQTKIEKLPRSIVKIKKLRHLIADRYVDERQSDFRYFVGMHAPKELSNLQELQTLETVESSKDLAEQLKKLMQLRSSFPHLKTLVLKHMPNVNQLKIMDGALPSIEGLYVVSLSKLDIVPEGIESLRTLKKLWLLYLHRDFKTQWHKNRMHQKMQHVPEIRV |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g11950 | LOC_Os11g11950.1 | Chr11 | 6631958 | 6634662 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTGAGGCAGTGCTCCTTTCTGTCAAAAAGGTTGGCAACGTGTTAGCAGATGAAGCTGCCAACGCTGTCATTGCCAAGGTGTCTGAAAAGGTTACTAATTTGAAGGAGATGCCAGAGAAGGTCGAGGAAATAAGGAAGCAACTGACAATCATGAACAGTGTTATACTACAGATAGGCACCTCATACCTCACTGGTATAGTTGTAAAGAATTGGATTGCAGAGGTGAGAAAGTTAGCCTACCATGTTGAGGACGTAATGGACAAGTACTCATATCATGCTATTCAACTTGAGGAAGAAGGTTTCTTGAAGAATGATATTGCTGAGGAGGTAGTCAAGTTAGAGAAGCAAATCCAGCAAGTTATAAAGCTTAAAGAGCAGTGGTTGCACCCTTCCCAGCTCAATCCCAACCAGCTTGCTGAGACTGGCAGACCACGGTCTCACGACAACTTCCCATATCTTGTCAAAGATGAAGATCTTGTGGGGATTGAAGACCACAAGAGATTGCTGGCTGGATGGTTGTACTCTGATGAGCCAGATAGAGCAGTGATAACAGTATCTGGTATAGGTGGGTTGGGAAAAACCACATTAGTCACAAATGTTTATGAGCGTGAAAAGGTCAACTTTGCTGCTCATGCATGGATTGTTGTCTCCCAGACCTACAATGTGGAGGCTCTATTAAGAAAGCTCCTTAGAAAGATTGGGTCTACTGAACTGTCACTTGATAGCTTGAACAATATGGATGCACATGACCTGAAAGAAGAAATTAAGAAAAAGATTGAAGATAGCAAATGTTTGATTGTGCTGGATGATGTCTGGGACAAAAAAGTGTACTTTCAGATGCAAGATGCATTCCAGAATCTTCAAGCAACTCGAGTCATCATCACAACTCGAGAGAATGATGTTGCAGCCCTTGCTACCTCAACACGCCGTCTCAACCTCCAGCCTTTGAATGGCGCTGATGCATTTGAACTCTTCTGTAGAAGGGCTTTCTATAACAAGGGCCACAAATGCCCCAAGGAGCTAGAGAAGGTTGCTAATTCTATAGTGGATAGGTGTCATGGCCTACCACTAGCAATTGTAACGATAGGAAGCCTTCTGTCTTCAAGACCAGCAGCAGAATTTGTTTGGAATAAAATATACAAACAGCTTCGGACTGAGCTAGCAAACAATGATCATGTCCGAGCAATTCTAAATTTGAGCTACCATGACCTATCAGGAGACCTCAGAAATTGCTTCTTGTACTGTAGCTTGTTCCCTGAAGACTACACAATGACACGGGAGAGCCTTCTGAGGTTGTGGGTTGCAGAAGGCTTTGTGCTAGGCAAAGAAAAGAACACGCTAGAGGATGTCGCAGAGGGAAACCTTATGGAACTGATCCACCGGAATATGCTGGAAGTTGTGGACAATGATGAGATTGGCAGGGTAAACTCCTGTAAGATGCATGACATTGTGCGTGTATTGGCTCTTTCTATTGCTAAAGAGGAGAGGTTTGGTTCAGCCAATGATCTTGGCACAATGTTGCTTATGGATAAGGAAGTTCGTCGCTTGTCAACATGTGGATGGAGTGATGATACTGTATCAACAGTTAAATTCATGCGCCTTCGGACCCTGATCTCACTTTCGACAACCTCATTGCCCCTTGAGATGTTATCCTCAATTTTGTGTGGATCTAGCTACCTTACAGTTCTTGAGCTGCAAGACTCAGAGATTACTGAAGTGCCGACTTCTATTGGGAATATGTTTAATCTACGTTACATTGGCTTACGACGCACCAAAGTCAAATCACTTCCGGAGTCTATTGGAAAGTTATCTAACCTCCACACGCTTGACATCAAGCAAACCAAAATTGAGAAGCTACCACGAAGTATTGTTAAGATCAAGAAGCTAAGACACCTTATAGCCGATAGATACGTTGATGAGAGGCAGTCAGATTTCCGGTACTTTGTTGGAATGCATGCCCCTAAAGAACTTTCCAACTTGCAAGAGCTGCAGACTCTAGAAACTGTGGAGTCTAGCAAAGACCTGGCTGAGCAACTGAAGAAATTGATGCAACTAAGAAGTTCTTTTCCCCACCTGAAGACACTTGTCTTAAAGCACATGCCCAATGTGAACCAGCTAAAGATCATGGATGGGGCACTTCCATCCATTGAAGGTTTGTACGTTGTGTCACTCTCAAAGCTGGATATAGTCCCTGAGGGCATTGAGTCCCTTCGGACCCTGAAGAAGCTCTGGCTTCTGTACCTGCACAGGGACTTCAAAACTCAATGGCACAAAAACAGAATGCATCAGAAGATGCAGCATGTTCCAGAGATTCGTGTTTAG
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| Protein seq | MAEAVLLSVKKVGNVLADEAANAVIAKVSEKVTNLKEMPEKVEEIRKQLTIMNSVILQIGTSYLTGIVVKNWIAEVRKLAYHVEDVMDKYSYHAIQLEEEGFLKNDIAEEVVKLEKQIQQVIKLKEQWLHPSQLNPNQLAETGRPRSHDNFPYLVKDEDLVGIEDHKRLLAGWLYSDEPDRAVITVSGIGGLGKTTLVTNVYEREKVNFAAHAWIVVSQTYNVEALLRKLLRKIGSTELSLDSLNNMDAHDLKEEIKKKIEDSKCLIVLDDVWDKKVYFQMQDAFQNLQATRVIITTRENDVAALATSTRRLNLQPLNGADAFELFCRRAFYNKGHKCPKELEKVANSIVDRCHGLPLAIVTIGSLLSSRPAAEFVWNKIYKQLRTELANNDHVRAILNLSYHDLSGDLRNCFLYCSLFPEDYTMTRESLLRLWVAEGFVLGKEKNTLEDVAEGNLMELIHRNMLEVVDNDEIGRVNSCKMHDIVRVLALSIAKEERFGSANDLGTMLLMDKEVRRLSTCGWSDDTVSTVKFMRLRTLISLSTTSLPLEMLSSILCGSSYLTVLELQDSEITEVPTSIGNMFNLRYIGLRRTKVKSLPESIGKLSNLHTLDIKQTKIEKLPRSIVKIKKLRHLIADRYVDERQSDFRYFVGMHAPKELSNLQELQTLETVESSKDLAEQLKKLMQLRSSFPHLKTLVLKHMPNVNQLKIMDGALPSIEGLYVVSLSKLDIVPEGIESLRTLKKLWLLYLHRDFKTQWHKNRMHQKMQHVPEIRV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.258888 | 0.289718 | 0.132135 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0226800 | RBH | 0.365759 | 0.403701 | 0.384855 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g12020 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0226800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008030 | SBH | 0.193260 | 19.767826 | 1.430310 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008040 | RBH | 0.198904 | 6.296239 | 0.434316 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007970 | SBH | 0.305399 | 8.817049 | 1.676870 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007850 | SBH | 0.093551 | 0.271765 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007860 | RBH | 1.050933 | 5.437952 | 4.828925 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0105300 | RBH | 7.778872 | 29.778783 | 12.4184995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007900 | RBH | 0.246380 | 0.692657 | 0.378460 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0111500 | SBH | 5.456746 | 174.322876 | 2.407701 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008010 | SBH | 0.031650 | 0.052251 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008000 | SBH | 0.160174 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008060 | SBH | 1.234372 | 13.013433 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007960 | SBH | 0.033460 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007980 | SBH | 0.180296 | 1.474919 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008000 | RBH | 0.370055 | 4.354017 | 0.451209 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007810 | SBH | 1.236004 | 20.805704 | 1.013925 |
