Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g10870 | OGI:11017790 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:5996508-5997541 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATGGCGCCATCCACCATTACAAAGGTGTCTCCACCGATCGAACGTTCGACGTCGAACCACCACTAGCTAGCTAGCTAGCCATGCCCCTCCTGCTGCAGCTGGCGCTCGCCGTCGCCGTCGCCGTCGCCATGGTCGGCACGGCAACGACGACGACGACGCACACGCGGTTCTACATGCACGACACGGTGACCGCGTCGGCGTCAGGGGGCGGGCCGGCGGCGACGGCGGTGCGCGTGGTGAGGGGCGTGGCGGCGGCGGCGCTGCCGGGCGACGCGGTGAACCGGTTCGGAGACCTGTACGCCATCGACGACCCGCTGACGGACGGCGCCGACGCGGCGTCGTCCGCCGCCGTGGGGCGCGCCAGGGGGTTCTACATGTTCTCGTCGCGGACGGACTCGGCGCTGCTGTTCAGCGCCACCATGGAGTTCACGGCGGGGGTGCACCGCGGCGGCGCCGTGTCGGTGCTCGCCAGGGACGCCATCCTCGACGAGGTGAGGGAGCTGCCGGTGGTCGGCGGCGCCGGCGTGCTCCGCGGCGCCGCCGGGTACGGCCTCCTCAGGACGCACTCCTTCAACGCCACCACCAACAACGCCGTCCTGCAGATCGACTTGTACCTCAGCGTGTAGAAGATCGACTACAAGTTCTTGCACACGATCTTAATTGCGCTTACCGTGTACTTACCGACTACAAGTTACTCAAAGGTGTTGATTCCATATATTTTCATTCCACGGAGGAGGAAGAATTTGTCGGTTTTAAATGAATTAGCACATATGAGTCAATATTTATGAGTGGTTTTGTAATTGTATAGGTTCATTACAAGCTAAGAGTTCAAAGCTTGTCTTATACTCCCTCCGTTCATGTTATAAGATGTTTTGACTTTACACAAAGACAAACTGTTTTAAGTTTTACCAACTTTATAGGAAAAAAGTAGTAATATTTTCAACCCAAAATAAATTTATTATAAAAATATAATTAATTATTAATTTAATGGAACTAATTTGGTAATTTAAATATTACTATATTTGTCTATAAA
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| CDS seq | ATGCCCCTCCTGCTGCAGCTGGCGCTCGCCGTCGCCGTCGCCGTCGCCATGGTCGGCACGGCAACGACGACGACGACGCACACGCGGTTCTACATGCACGACACGGTGACCGCGTCGGCGTCAGGGGGCGGGCCGGCGGCGACGGCGGTGCGCGTGGTGAGGGGCGTGGCGGCGGCGGCGCTGCCGGGCGACGCGGTGAACCGGTTCGGAGACCTGTACGCCATCGACGACCCGCTGACGGACGGCGCCGACGCGGCGTCGTCCGCCGCCGTGGGGCGCGCCAGGGGGTTCTACATGTTCTCGTCGCGGACGGACTCGGCGCTGCTGTTCAGCGCCACCATGGAGTTCACGGCGGGGGTGCACCGCGGCGGCGCCGTGTCGGTGCTCGCCAGGGACGCCATCCTCGACGAGGTGAGGGAGCTGCCGGTGGTCGGCGGCGCCGGCGTGCTCCGCGGCGCCGCCGGGTACGGCCTCCTCAGGACGCACTCCTTCAACGCCACCACCAACAACGCCGTCCTGCAGATCGACTTGTACCTCAGCGTGTAG
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| Protein seq | MPLLLQLALAVAVAVAMVGTATTTTTHTRFYMHDTVTASASGGGPAATAVRVVRGVAAAALPGDAVNRFGDLYAIDDPLTDGADAASSAAVGRARGFYMFSSRTDSALLFSATMEFTAGVHRGGAVSVLARDAILDEVRELPVVGGAGVLRGAAGYGLLRTHSFNATTNNAVLQIDLYLSV |
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| Function | Dirigent protein 19 [UniProtKB/Swiss-Prot:Q9C523] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g10870 | LOC_Os11g10870.1 | Chr11 | 5996508 | 5997541 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCCCTCCTGCTGCAGCTGGCGCTCGCCGTCGCCGTCGCCGTCGCCATGGTCGGCACGGCAACGACGACGACGACGCACACGCGGTTCTACATGCACGACACGGTGACCGCGTCGGCGTCAGGGGGCGGGCCGGCGGCGACGGCGGTGCGCGTGGTGAGGGGCGTGGCGGCGGCGGCGCTGCCGGGCGACGCGGTGAACCGGTTCGGAGACCTGTACGCCATCGACGACCCGCTGACGGACGGCGCCGACGCGGCGTCGTCCGCCGCCGTGGGGCGCGCCAGGGGGTTCTACATGTTCTCGTCGCGGACGGACTCGGCGCTGCTGTTCAGCGCCACCATGGAGTTCACGGCGGGGGTGCACCGCGGCGGCGCCGTGTCGGTGCTCGCCAGGGACGCCATCCTCGACGAGGTGAGGGAGCTGCCGGTGGTCGGCGGCGCCGGCGTGCTCCGCGGCGCCGCCGGGTACGGCCTCCTCAGGACGCACTCCTTCAACGCCACCACCAACAACGCCGTCCTGCAGATCGACTTGTACCTCAGCGTGTAG
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| Protein seq | MPLLLQLALAVAVAVAMVGTATTTTTHTRFYMHDTVTASASGGGPAATAVRVVRGVAAAALPGDAVNRFGDLYAIDDPLTDGADAASSAAVGRARGFYMFSSRTDSALLFSATMEFTAGVHRGGAVSVLARDAILDEVRELPVVGGAGVLRGAAGYGLLRTHSFNATTNNAVLQIDLYLSV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.159674 | 0.0 | 1.671497 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0215100 | RBH | 0.275869 | 0.0 | 7.586499 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0215100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007310 | RBH | 0.234088 | 3.292245 | 1.281611 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007380 | RBH | 0.0 | 6.354357 | 5.035847 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007200 | RBH | 0.0 | 0.0 | 8.042654 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007210 | RBH | 0.085290 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007170 | SBH | 6.059134 | 0.0 | 15.975200 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0095300 | RBH | 3.9562855 | 0.842782 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007150 | SBH | 0.249806 | 0.0 | 0.743734 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0102000 | RBH | 4.9200665 | 0.013287 | 0.0461015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007300 | SBH | 0.475911 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007180 | SBH | 0.457558 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007200 | RBH | 8.849732 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007280 | SBH | 0.262758 | 0.0 | 2.832543 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007280 | SBH | 0.146740 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007320 | SBH | 0.0 | 1.878412 | 8.329061 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007150 | SBH | 0.567990 | 0.0 | 9.876303 |
