Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0007300 | OGI:11017790 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:6335947-6342795 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgtccctctcctccatcctcctcggctgcttcctcctcgcagccgccgtcttcctccaccgcaacggcgcctccaccaccaccaccaccaccacccacctccacttctacatgcacgacgcctacaccggcccgtctcccaccgccatgcgcgtcgtctccggccgctccttgttgctcgatggcggcggcgacggctcgccgccgcgtcagttcggcgacatcgtggcgctgaacaacgcgctgacggaggggccatccgccggcagcgcgcgcgtgggcacggcgcaggggttcgcggtgcgggtgtcggagggcggcgtggtgtcggacctgagcctgcacatggtgctggaggccggcgagcaccgcggcagctcggtgacggcgaaggggcgcatcgacatggacgccggcgagcgcgagtcggtggtgatcggcggcacggggcggttccggttggcgcgcgggtacatggtcaccaagaactacgactacagcctcgccaccggtggcatcgtcgagatcgacctctacctgcagcactagctagcacggagctagccatggacaggaaacgcacgcgactactgctgcatatatgcatggctgcatgcatcatctgtgcgaggagttgtgcagcggcggatttatgaagaaaaaatagcgaggggtctgaacaacaatacaaagttataacttctttctatctgtatatattaaaaatatttgatggggttttatgggggctcgtattgtcctcgcgttaatagtagaggctcaagatcccgatgcccccatgatatatatgccctaaagttgcgtgtatagtttctttgtggaatgaaaatccatctcctatatacgtagatagttcaaagtgtcgagaagttgtaactagactaatatatattgtccagttgatgtattgtccagttgtaacattaattatatatttatttatggttttttagcccttgattgttgtttgttttgataaaaaataattagcacgagcccttgatagttgtttgctttaaatataataatttttgaatctgaaattaacaaataagaagatgtatatctattggcattgtctttatcataccggtgatatgagctgatgttatcagctgaatatttgaacatgtgctcagtaatatttagacaagtgcttggatatgattcgacaccactacggttcaggcgtctgatatttagcttaaaaatcggacgcccacctcagcctccatcacacatgtaggcgcaccacacaaagcctaaaaaatcttgcgtagacacgtagctaagtctacattcatgcattcatctaataaaaattaggctattttttctcttaattttcttcttccatttacaatccgataccgctattaaattcgctgcaattaaatgtttagaacaagaccacacatggttatattttaatgaaaaatatttagcatttttacatttcttttaaatgttgcacatattttatttaaatgtttcaactagaatacatataatgtttcactagttaacaacattggttttcctggaatgtttcagcaaacattttataatgtttcaatagttacaatttaatattaatatgtgatataaatatgacttttttcgctctttgggactcattgttttatataggtggttactgttgttgcaatcggtagttttaattgttgcatttctctgaaacactttatacagtgaacaattttctttaaagggtgaaacaatatttgatttatttatcaaaatataattgtgtgatatattattataaatatttaattgtaaggaatacaacagtttatcaaatcatagaacagataattattttcgaagaaaaaacatttgaaaaggggagaaaacatgcaaatgaggaagcaaaaacttacgtggacatgcacgactggcatgacatgaaatgcatgtgtagacatatacactatgaacgagaaaaggagagtagcggtgagagagaaaactgactcaacgatagagtagttgaagcgttaggtggacgctcgattttcggttcgttgagatcaggtgtccgactcatagcattactgggatccgtatgtacgagcaagataaaattaattaagcatgtatgatcatgcctatccagtatatatccacaatatattccgggtaagacgttacgtgacggtccaaggattctcgtgggatgccagccaaatataaatctggcgattccatgtaatgcaaatatcttgctaggaacacaatgtctaaataaataggttttaaaataatttgtaagaatgtatgttccgcaatacaaaatttaatttaaagggataacacattttttatagcttgatgcgtaaacaaaaatgtttatattttggaatggggtgagtatttctcatcgatcaattaaatttcatccaggttcactggaccttctcagtattcaaagataggatctggactctttaagtcctcacccgtttttttacgggtgaaaaggatacagaaatttcctgaccatatcaatatcatccgcaaaactaatatattaataatatttttatcgattgttaaaatcttccttgagaaaaatcttacataattaggctttaaaagtatgaaacaacatacttttcccttaaaaaggttatggaacaacttgaaaggaagtaatgcgtgcaatataatgaaattgcttgcaaaatttaaagggaatgtctaaccatcatattgacagaaatcctcctaaaaatctttcaaatataactacagtacaattatagtcataatcataatataattacaatataaattagttacatagatgtaacttgccatgtaactcggaaaaaagatcaaggctgatcaaggctcagtggtggagacatgccatggtatcccgcaggttgtctacgacacacacacatccactatatatgcttgatttttaatttctcaatcctgcatgcacgaaaaaaaaaggaaagaccaattttctatcacatgttagatagtaattcctaaattatatttaaacggatggcatgaggttttaatttggtacaggcagatccggttttaattcaaaatatgattttcttttaattccatcaattagatttcattgaagattaaagaataccctttttatttcaagctttctctaccacaaactctactactcccccatgtcacttttggatggttttatgtgtgtgcctaaaaagaaaatcattggaaaaaggcggtatccaggacatagttaatttcgtctctctcatcttcttatcatccttgattctgtgtggctcccaaaaaaacgtcgaaaattcgttgttcggtgtccatctcatctcctactttaattatcccaggccggtgtctgtctgtggctactggctaccaaaaagttgaaaaattcgtctgaaaattaaaactagatccgatccaccgacaggaaccctcgtgtaaatcacttccaatcctttttttttttgttcaaccagtctataccactcaaagctgtacatgtttaaaacatgattactttttgtatggtctcactcataatgtcatattcctctttatgtttccttcccctggctccatcgaagaatccttgtattcacatatgctccgacggcgaaggggatctcgcctgggagagcgaaggcggctggcctgcagcaatttcttagtatccgaaacaagctttattatcagtaaaagctccattgcatatcctcccagtggaattcacgacatgacatggaacacaactcatcgcactcggtccaacttcggcccaatggaaagggacaactcgtgaccctcggaaaacgtccacttatggcccacgaacgaacggcctcttgaaaacagcccaagttacttaaatgaataagtatatttgtacccctcatccatgcacattgtccaatcgcattcctcaatcgcaaacatggtataaggcctcccctaactttaaaaacttagtgcaaatcgacttctttgatgatttaaaaaagaggttttatgataatgtggaaaattgacagtggtcagatcgctaagaaatagacgtattccctaaatcggttcacttttggcccacgtgaaaacttcctagatatgtctcacacaaaagtagcccaactagagcctacgcaggccgatctaagatgcggcccacatagaaccaaacgagcccaagtgagaatgatccagctgtcgaagccatcggcctagactagagcctacttagaccaatcagcgaccaattttgctatatatttatcgaaaaatttgacatgcgtaaatatagtacaattacagtgtaattatattataacttgtatgtaacttttatataattttaaatcgttagatttgctccaagatttgttcaagcgataaggaaagaaaatcacagcatgtacacatatgagggagcaattttacggtccttaaggaggtaccattttttctattgtaaatttggtacctctaaatttttgtacactaaatttttgttattgtaaattttgtacactaaattttttgtacttcatggtacctcctcaaggaccgtagaattgctccatatgaggagattcggtcctacgtcctttgtttcatggaaatagcatgttaccaatggatttcgaaagtcacatagaagttacaaaatgtaattactgttaacacccaaattttgcatccagacatgaaataggaaaatatagccaaatttggaagtaactggtttccactacgcgaggccagtatgaccgctgctataggtctgtcaaacaacaaatgtgtgatgggtctggcaggcagcatgtgcccggttagatcgattgactccgagaccaagtcgagttttgctaggtttcgggttttcttacttgggaggtatttttgtagttctaattagtctctaccccgagttagacgtggagaccaacccctttataaggtcaaggccagttcaattgagacaccaatatacttccaacacaattagccaaatgaatcacacttttaatatcgcatctattttttttctagtcctaacctagttttcatccatcttcatcgatttgcgctgaaaatcgtccatacttgtcaagagagtgcaaatcccctttacatgtttgtcccgccttccgtttcactaagacgggagtttatccctattccatctaaatgggtccgcttgccggtttggttttacaaaacctatcttgatttgattttgttcaggttgaggtggttggtgattacgtatcaccgcaaaacatttggtgtttcggttgtgttttgtcggcatgaaaaaaaagttgctaacaaattgtcaaaaaaaatatataggtagttccgaagatcaagcatgagtggagaagagcacgacacacaaatcttgaatcctctctcgaatttgacctgtactcaccctcaattcctcaaaggacggagagattttcagaaagaaaatcgccaaccatgagagatggaagaactgccacgcatttctaccctcgatattcctccaacaaatcaatccaacaccaccgatccaatcgatcaccaacctccgatttcgacatggcccgacacagtacacccgccccctaacttttgcttaactcgcactgatcatcatatgcataaagcatatcaaagctactgtcctgtcaacctctaccaccgcacatctcacatactcatctttttttttaaagataatagaatataatcccggcctttgctcaaagagctacagccaattattacaccaactcaataaaaactcacacatgaataaacaaaagcacagacgaactaataaaaactcatacagcataaaaagaacacaaaaattattaataaattctacttgtgaatctcacatactcacctgctgatggaccatctcaatagtgccaatggcgccatccaccattacaaaggtgtctccaccgatcgaacgttcgacgtcgaaccaccactagctaactagctagccatgcccctcctgctgcagctggtgctcgccgtcgccgccgtcgccgtcgccgttggcgcggcgacgacgacgacgacgcacacgcggttctacatgcacgacacggtgaccgcgtcggcgtcagggggcgggccggcggcgacggcggtgcgcgtggtgaggggcgcggccgcggcggcgctgccgggcgatgcggtgaaccggttcggcgacctgtacgccgtcgacgacccgctgacggacggccccgacgcgtcgtcgtccgccgccgtggggcgcgccagggggttctacatgttcgcgtcgcggacggactcggcgctgctgttcagcgccaccatggagttcacggcgggggtgcaccgcggcggcgccgtgtcggtgctcgccagggacgccatactcgacgaggtgagggagctgccggtggtcggcggcgccggcgtgctccgcggcgccgccgggtacggcctcctcaggacgcactccttcaacgccaccaccaacaacgccgtcctgcagatcgacatgtacctcaccgtgtagaagatcgactacaagttcttgcccacgatctgaattagttgcagttaccgtgtacttaccgactacaagttgctcaaaggtgccgattctgtacattttcattctacggaagtagaaaaagatcttatgtaccaattttaaataaaccgatacctataagccaatacttatgaggggttttgtagcagtataaattcattactagcgagagttcaaagtaggtcttataataagttagacat
More
|
||||||||||
| CDS seq | atggcgtccctctcctccatcctcctcggctgcttcctcctcgcagccgccgtcttcctccaccgcaacggcgcctccaccaccaccaccaccaccacccacctccacttctacatgcacgacgcctacaccggcccgtctcccaccgccatgcgcgtcgtctccggccgctccttgttgctcgatggcggcggcgacggctcgccgccgcgtcagttcggcgacatcgtggcgctgaacaacgcgctgacggaggggccatccgccggcagcgcgcgcgtgggcacggcgcaggggttcgcggtgcgggtgtcggagggcggcgtggtgtcggacctgagcctgcacatggtgctggaggccggcgagcaccgcggcagctcggtgacggcgaaggggcgcatcgacatggacgccggcgagcgcgagtcggtggtgatcggcggcacggggcggttccggttggcgcgcgggtacatggtcaccaagaactacgactacagcctcgccaccggtggcatcctggtgctcgccgtcgccgccgtcgccgtcgccgttggcgcggcgacgacgacgacgacgcacacgcggttctacatgcacgacacggtgaccgcgtcggcgtcagggggcgggccggcggcgacggcggtgcgcgtggtgaggggcgcggccgcggcggcgctgccgggcgatgcggtgaaccggttcggcgacctgtacgccgtcgacgacccgctgacggacggccccgacgcgtcgtcgtccgccgccgtggggcgcgccagggggttctacatgttcgcgtcgcggacggactcggcgctgctgttcagcgccaccatggagttcacggcgggggtgcaccgcggcggcgccgtgtcggtgctcgccagggacgccatactcgacgaggtgagggagctgccggtggtcggcggcgccggcgtgctccgcggcgccgccgggtacggcctcctcaggacgcactccttcaacgccaccaccaacaacgccgtcctgcagatcgacatgtacctcaccgtgtag
More
|
||||||||||
| Protein seq | MASLSSILLGCFLLAAAVFLHRNGASTTTTTTTHLHFYMHDAYTGPSPTAMRVVSGRSLLLDGGGDGSPPRQFGDIVALNNALTEGPSAGSARVGTAQGFAVRVSEGGVVSDLSLHMVLEAGEHRGSSVTAKGRIDMDAGERESVVIGGTGRFRLARGYMVTKNYDYSLATGGILVLAVAAVAVAVGAATTTTTHTRFYMHDTVTASASGGGPAATAVRVVRGAAAAALPGDAVNRFGDLYAVDDPLTDGPDASSSAAVGRARGFYMFASRTDSALLFSATMEFTAGVHRGGAVSVLARDAILDEVRELPVVGGAGVLRGAAGYGLLRTHSFNATTNNAVLQIDMYLTV |
||||||||||
| Function | Dirigent protein 19 [UniProtKB/Swiss-Prot:Q9C523] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0007300 | OsLima_11g0007300.01 | Chr11 | 6335947 | 6342795 | + | NAM | ||
| CDS seq | atggcgtccctctcctccatcctcctcggctgcttcctcctcgcagccgccgtcttcctccaccgcaacggcgcctccaccaccaccaccaccaccacccacctccacttctacatgcacgacgcctacaccggcccgtctcccaccgccatgcgcgtcgtctccggccgctccttgttgctcgatggcggcggcgacggctcgccgccgcgtcagttcggcgacatcgtggcgctgaacaacgcgctgacggaggggccatccgccggcagcgcgcgcgtgggcacggcgcaggggttcgcggtgcgggtgtcggagggcggcgtggtgtcggacctgagcctgcacatggtgctggaggccggcgagcaccgcggcagctcggtgacggcgaaggggcgcatcgacatggacgccggcgagcgcgagtcggtggtgatcggcggcacggggcggttccggttggcgcgcgggtacatggtcaccaagaactacgactacagcctcgccaccggtggcatcctggtgctcgccgtcgccgccgtcgccgtcgccgttggcgcggcgacgacgacgacgacgcacacgcggttctacatgcacgacacggtgaccgcgtcggcgtcagggggcgggccggcggcgacggcggtgcgcgtggtgaggggcgcggccgcggcggcgctgccgggcgatgcggtgaaccggttcggcgacctgtacgccgtcgacgacccgctgacggacggccccgacgcgtcgtcgtccgccgccgtggggcgcgccagggggttctacatgttcgcgtcgcggacggactcggcgctgctgttcagcgccaccatggagttcacggcgggggtgcaccgcggcggcgccgtgtcggtgctcgccagggacgccatactcgacgaggtgagggagctgccggtggtcggcggcgccggcgtgctccgcggcgccgccgggtacggcctcctcaggacgcactccttcaacgccaccaccaacaacgccgtcctgcagatcgacatgtacctcaccgtgtag
More
|
|||||||
| Protein seq | MASLSSILLGCFLLAAAVFLHRNGASTTTTTTTHLHFYMHDAYTGPSPTAMRVVSGRSLLLDGGGDGSPPRQFGDIVALNNALTEGPSAGSARVGTAQGFAVRVSEGGVVSDLSLHMVLEAGEHRGSSVTAKGRIDMDAGERESVVIGGTGRFRLARGYMVTKNYDYSLATGGILVLAVAAVAVAVGAATTTTTHTRFYMHDTVTASASGGGPAATAVRVVRGAAAAALPGDAVNRFGDLYAVDDPLTDGPDASSSAAVGRARGFYMFASRTDSALLFSATMEFTAGVHRGGAVSVLARDAILDEVRELPVVGGAGVLRGAAGYGLLRTHSFNATTNNAVLQIDMYLTV
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0007300 | OsLima_11g0007300.02 | Chr11 | 6341979 | 6342716 | + | IsoSeq | ||
| CDS seq | gaaccaccactagct |
|||||||
| Protein seq | EPPLA |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.475911 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0214900 | RBH | 0.341938 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g10840 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0214900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007300 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007370 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007190 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007200 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007150 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0095200 | RBH | 0.214191 | 0.156146 | 0.526149 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007150 | RBH | 0.249806 | 0.0 | 0.743734 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0101400 | RBH | 0.4081035 | 0 | 0.038103 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007290 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007180 | RBH | 0.457558 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007190 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007280 | RBH | 0.262758 | 0.0 | 2.832543 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007280 | RBH | 0.146740 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007300 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007150 | RBH | 0.567990 | 0.0 | 9.876303 |
