Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0007280 | OGI:11017790 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:6419875-6426638 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgtccctctcctccatcctcctcggctgcttcctcctcgcagccgccgtcttcctccaccgcaacggcgcctccaccaccaccaccaccaccacccacctccacttctacatgcacgacgcctacaccggcccgtctcccaccgccatgcgcgtcgtctccggccgctccttgttgctcgatggcggcggcgacggctcgccgccgcgtcagttcggcgacatcgtggcgctgaacaacgcgctgacggaggggccatccgccggcagcgcgcgcgtgggcacggcgcaggggttcgcggtgcgggtgtcggagggcggcgtggtgtcggacctgagcctgcacatggtgctggaggccggcgagcaccgcggcagctcggtgacggcgaaggggcgcatcgacatggacgccggcgagcgcgagtcggtggtgatcggcggcacggggcggttccggttggcgcgcgggtacatggtcaccaagaactacgactacagcctcgccaccggtggcatcgtcgagatcgacctctacctgcagcactagctagcacggagctagccatggacaggaaacgcacgcgactactgctgcatatatgcatggctgcatgcatcatctgtgcgaggagttgtgcagcggcggatttatgaagaaaaaatagcgaggggtctgaacaacaatacaaagttataacttctttctatctgtatatattaaaaatatttgatggggttttatgggggctcgtattgtcctcgcgttaatagtagaggctcaagatcccgatgcccccatgatatatatgccctaaagttgcgtgtatagtttctttgtggaatgaaaatccatctcctatatacgtagatagttcaaagtgtcgagaagttgtaactagactaatatatattgtccagttgatgtattgtccagttgtaacattaattatatatttatttatggttttttagcccttgattgttgtttgttttgataaaaaataattagcacgagcccttgatagttgtttgctttaaatataataatttttgaatctgaaattaacaaataagaagatgtatatctattggcattgtctttatcataccggtgatatgagctgatgttatcagctgaatatttgaacatgtgctcagtaatatttagacaagtgcttggatatgattcgacaccactacggttcaggcgtctgatatttagcttaaaaatcggacgcccacctcagcctccatcacacatgtaggcgcaccacacaaagcctaaaaaatcttgcgtagacacgtagctaagtctacattcatgcattcatctaataaaaattaggctattttttctcttaattttcttcttccatttacaatccgataccgctattaaattcgctgcaattaaatgtttagaacaagaccacacatggttatattttaatgaaaaatatttagcatttttacatttcttttaaatgttgcacatattttatttaaatgtttcaactagaatacatataatgtttcactagttaacaacattggttttcctggaatgtttcagcaaacattttataatgtttcaatagttacaatttaatattaatatgtgatataaatatgacttttttcgctctttgggactcattgttttatataggtggttactgttgttgcaatcggtagttttaattgttgcatttctctgaaacactttatacagtgaacaattttctttaaagggtgaaacaatatttgatttatttatcaaaatataattgtgtgatatattattataaatatttaattgtaaggaatacaacagtttatcaaatcatagaacagatattttcgaagaaaaaacatttgaaaaggggagaaaacatgcaaatgaggaagcaaaaacttacgtggacatgcacgactggcatgacatgaaatgcatgtgtagacatatacactatgaacgagaaaaggagagtagcggtgagagagaaaactgactcaacgatagagtagttgaagcgttaggtggacgctcgattttcggttcgttgagatcaggtgtccgactcatagcattactgggatccgtatgtacgagcaagataaaattaattaagcatgtatgatcatgcctatccagtatatatccacaatatattccgggtaagacgttacgtgacggtccaaggattctcgtgggatgccagccaaatataaatctggcgattccatgtaatgcaaatatcttgctaggaacacaatgtctaaataaataggttttaaaataatttgtaagaatgtatgttccgcaatacaaaatttaatttaaagggataacacattttttatagcttgatgcgtaaacaaaaatgtttatattttggaatggggtgagtatttctcatcgatcaattaaatttcatccaggttcactggaccttctcagtattcaaagataggatctggactctttaagtcctcacccgtttttttacgggtgaaaaggatacagaaatttcctgaccatatcaatatcatccgcaaaactaatatattaataataTttttatcgattgttaaaatcttccttgagaaaaatcttacataattaggctttaaaagtatgaaacaacatacttttcccttaaaaaggttatggaacaacttgaaaggaagtaatgcgtgcaatataatgaaattgcttgcaaaatttaaagggaatgtctaaccatcatattgacagaaatcctcctaaaaatctttcaaatataactacagtacaattatagtcataatcataatataattacaatataaattagttacatagatgtaacttgccatgtaactcggaaaaaagatcaaggctgatcaaggctcagtggtggagacatgccatggtatcccgcaggttgtctacgacacacacacatccactatatatgcttgatttttaatttctcaatcctgcatgcacgaaaaaaaaaggaaagaccaattttctatcacatgttagatagtaattcctaaattataTttaaacggatggcatgaggttttaatttggtacaggcagatccggttttaattcaaaatatgattttcttttaattccatcaattagatttcattgaagattaaagaataccctttttatttcaagctttctctaccacaaactctactactcccccatgtcacttttggatggttttatgtgtgtgcctaaaaagaaaatcattggaaaaaggcggtatccaggacatagttaatttcgtctctctcatcttcttatcatccttgattctgtgtggctcccaaaaaaacgtcgaaaattcgttgttcggtgtccatctcatctcctactttaattatcccaggccggtgtctgtctgtggctactggctaccaaaaagttgaaaaattcgtctgaaaattaaaactagatccgatccaccgacaggaaccctcgtgtaaatcacttccaatccttttttttttgttcaaccagtctataccactcaaagctgtacatgtttaaaacatgattactttttgtatggtctcactcataatgtcatattcctctttatgtttccttcccctggctccatcgaagaatccttgtattcacatatgctccgacggcgaaggggatctcgcctgggagagcgaaggcggctggcctgcagcaatttcttagtatccgaaacaagctttattatcagtaaaagctccattgcatatcctcccagtggaattcacgacatgacatggaacacaactcatcgcactcggtccaacttcggcccaatggaaagggacaactcgtgaccctcggaaaacgtccacttatggcccacgaacgaacggcctcttgaaaacagcccaagttacttaaatgaataagtatatttgtacccctcatccatgcacattgtccaatcgcattcctcaatcgcaaacatggtataaggcctcccctaactttaaaaacttagtgcaaatcgacttctttgatgatttaaaaaagaggttttatgataatgtggaaaattgacagtggtcagatcgctaagaaatagacgtattccctaaatcggttcacttttggcccacgtgaaaacttcctagatatgtctcacacaaaagtagcccaactagagcctacgcaggccgatctaagatgcggcccacatagaaccaaacgagcccaagtgagaatgatccagctgtcgaagccatcggcctagactagagcctacttagaccaatcagcgaccaattttgctatatatttatcgaaaaatttgacatgcgtaaatatagtacaattacagtgtaattatattataacttgtatgtaacttttatataattttaaatcgttagatttgctccaagatttgttcaagcgataaggaaagaaaatcacagcatgtacacatatgagggagcaattttacggtccttaaggaggtaccattttttctattgtaaatttggtacctctaaatttttgtacactaaatttttgttattgtaaattttgtacactaaattttttgtacttcatggtacctcctcaaggaccgtagaattgctccatatgaggagattcggtcctacgtcctttgtttcatggaaatagcatgttaccaatggatttcgaaagtcacatagaagttacaaaatgtaattactgttaacacccaaattttgcatccagacatgaaataggaaaatatagccaaatttggaagtaactggtttccactacgcgaggccagtatgaccgctgctataggtctgtcaaacaacaaatgtgtgatgggtctggcaggcagcatgtgcccggttagatcgattgactccgagaccaagtcgagttttgctaggtttcgggttttcttacttgggaggtatttttgtagttctaattagtctctaccccgagttagacgtggagaccaacccctttataaggtcaaggccagttcaattgagacaccaatatacttccaacacaattagccaaatgaatcacacttttaatatcgcatctattttttttctagtcctaacctagttttcatccatcttcatcgatttgcgctgaaaatcgtccatacttgtcaagagagtgcaaatcccctttacatgtttgtcccgccttccgtttcactaagacgggagtttatccctattccatctaaatgggtccgcttgccggtttggttttacaaaacctatcttgatttgattttgttcaggttgaggtggttggtgattacgtatcaccgcaaaacatttggtgtttcggttgtgttttgtcggcatgaaaaaaaagttgctaacaaattgtcaaaaaaaatatataggtagttccgaagatcaagcatgagtggagaagagcacgacacacaaatcttgaatcctctctcgaatttgacctgtactcaccctcaattcctcaaaggacggagagattttcagaaagaaaatcgccaaccatgagagatggaagaactgccacgcatttctaccctcgatattcctccaacaaatcaatccaacaccaccgatccaatcgatcaccaacctccgatttcgacatggcccgacacagtacacccgccccctaacttttgcttaactcgcactgatcatcatatgcataaagcatatcaaagctactgtcctgtcaacctctaccaccgcacatctcacatactcatctttttttttaaagataatagaatataatcccggcctttgctcaaagagctacagccaattattacaccaactcaataaaaactcacacatgaataaacaaaagcacagacgaactaataaaaactcatacagcataaaaagaacacaaaaattattaataaattctacttgtgaatctcacatactcacctgctgatggaccatctcaatagtgccaatggcgccatccaccattacaaaggtgtctccaccgatcgaacgttcgacgtcgaaccaccactagctaactagctagccatgcccctcctgctgcagctggtgctcgccgtcgccgccgtcgccgtcgccgttggcgcggcgacgacgacgacgacgcacacgcggttctacatgcacgacacggtgaccgcgtcggcgtcagggggcgggccggcggcgacggcggtgcgcgtggtgaggggcgcggccgcggcggcgctgccgggcgatgcggtgaaccggttcggcgacctgtacgccgtcgacgacccgctgacggacggccccgacgcgtcgtcgtccgccgccgtggggcgcgccagggggttctacatgttcgcgtcgcggacggactcggcgctgctgttcagcgccaccatggagttcacggcgggggtgcaccgcggcggcgccgtgtcggtgctcgccagggacgccatactcgacgaggtgagggagctgccggtggtcggcggcgccggcgtgctccgcggcgccgccgggtacggcctcctcaggacgcactccttcaacgccaccaccaacaacgccgtcctgcagatcgacatgtacctcaccgtgtagaagatcgactacaagttcttgcccacgatctgaattagttgcagttaccgtgtacttaccgactacaagttgctcaaaggtgccgattctgtacattttcattctacggaagtagaaaaagatcttatgtaccaattttaaataaaccgatacctataagcc
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| CDS seq | atggcgtccctctcctccatcctcctcggctgcttcctcctcgcagccgccgtcttcctccaccgcaacggcgcctccaccaccaccaccaccaccacccacctccacttctacatgcacgacgcctacaccggcccgtctcccaccgccatgcgcgtcgtctccggccgctccttgttgctcgatggcggcggcgacggctcgccgccgcgtcagttcggcgacatcgtggcgctgaacaacgcgctgacggaggggccatccgccggcagcgcgcgcgtgggcacggcgcaggggttcgcggtgcgggtgtcggagggcggcgtggtgtcggacctgagcctgcacatggtgctggaggccggcgagcaccgcggcagctcggtgacggcgaaggggcgcatcgacatggacgccggcgagcgcgagtcggtggtgatcggcggcacggggcggttccggttggcgcgcgggtacatggtcaccaagaactacgactacagcctcgccaccggtggcatcctggtgctcgccgtcgccgccgtcgccgtcgccgttggcgcggcgacgacgacgacgacgcacacgcggttctacatgcacgacacggtgaccgcgtcggcgtcagggggcgggccggcggcgacggcggtgcgcgtggtgaggggcgcggccgcggcggcgctgccgggcgatgcggtgaaccggttcggcgacctgtacgccgtcgacgacccgctgacggacggccccgacgcgtcgtcgtccgccgccgtggggcgcgccagggggttctacatgttcgcgtcgcggacggactcggcgctgctgttcagcgccaccatggagttcacggcgggggtgcaccgcggcggcgccgtgtcggtgctcgccagggacgccatactcgacgaggtgagggagctgccggtggtcggcggcgccggcgtgctccgcggcgccgccgggtacggcctcctcaggacgcactccttcaacgccaccaccaacaacgccgtcctgcagatcgacatgtacctcaccgtgtag
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| Protein seq | MASLSSILLGCFLLAAAVFLHRNGASTTTTTTTHLHFYMHDAYTGPSPTAMRVVSGRSLLLDGGGDGSPPRQFGDIVALNNALTEGPSAGSARVGTAQGFAVRVSEGGVVSDLSLHMVLEAGEHRGSSVTAKGRIDMDAGERESVVIGGTGRFRLARGYMVTKNYDYSLATGGILVLAVAAVAVAVGAATTTTTHTRFYMHDTVTASASGGGPAATAVRVVRGAAAAALPGDAVNRFGDLYAVDDPLTDGPDASSSAAVGRARGFYMFASRTDSALLFSATMEFTAGVHRGGAVSVLARDAILDEVRELPVVGGAGVLRGAAGYGLLRTHSFNATTNNAVLQIDMYLTV |
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| Function | Dirigent protein 19 [UniProtKB/Swiss-Prot:Q9C523] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0007280 | OsLiXu_11g0007280.01 | Chr11 | 6419875 | 6426476 | + | NAM | ||
| CDS seq | atggcgtccctctcctccatcctcctcggctgcttcctcctcgcagccgccgtcttcctccaccgcaacggcgcctccaccaccaccaccaccaccacccacctccacttctacatgcacgacgcctacaccggcccgtctcccaccgccatgcgcgtcgtctccggccgctccttgttgctcgatggcggcggcgacggctcgccgccgcgtcagttcggcgacatcgtggcgctgaacaacgcgctgacggaggggccatccgccggcagcgcgcgcgtgggcacggcgcaggggttcgcggtgcgggtgtcggagggcggcgtggtgtcggacctgagcctgcacatggtgctggaggccggcgagcaccgcggcagctcggtgacggcgaaggggcgcatcgacatggacgccggcgagcgcgagtcggtggtgatcggcggcacggggcggttccggttggcgcgcgggtacatggtcaccaagaactacgactacagcctcgccaccggtggcatcctggtgctcgccgtcgccgccgtcgccgtcgccgttggcgcggcgacgacgacgacgacgcacacgcggttctacatgcacgacacggtgaccgcgtcggcgtcagggggcgggccggcggcgacggcggtgcgcgtggtgaggggcgcggccgcggcggcgctgccgggcgatgcggtgaaccggttcggcgacctgtacgccgtcgacgacccgctgacggacggccccgacgcgtcgtcgtccgccgccgtggggcgcgccagggggttctacatgttcgcgtcgcggacggactcggcgctgctgttcagcgccaccatggagttcacggcgggggtgcaccgcggcggcgccgtgtcggtgctcgccagggacgccatactcgacgaggtgagggagctgccggtggtcggcggcgccggcgtgctccgcggcgccgccgggtacggcctcctcaggacgcactccttcaacgccaccaccaacaacgccgtcctgcagatcgacatgtacctcaccgtgtag
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| Protein seq | MASLSSILLGCFLLAAAVFLHRNGASTTTTTTTHLHFYMHDAYTGPSPTAMRVVSGRSLLLDGGGDGSPPRQFGDIVALNNALTEGPSAGSARVGTAQGFAVRVSEGGVVSDLSLHMVLEAGEHRGSSVTAKGRIDMDAGERESVVIGGTGRFRLARGYMVTKNYDYSLATGGILVLAVAAVAVAVGAATTTTTHTRFYMHDTVTASASGGGPAATAVRVVRGAAAAALPGDAVNRFGDLYAVDDPLTDGPDASSSAAVGRARGFYMFASRTDSALLFSATMEFTAGVHRGGAVSVLARDAILDEVRELPVVGGAGVLRGAAGYGLLRTHSFNATTNNAVLQIDMYLTV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0007280 | OsLiXu_11g0007280.02 | Chr11 | 6425826 | 6426638 | + | IsoSeq | ||
| CDS seq | ctgatggaccatctcaatagtgccaatggcgccatccaccattacaaaggtgtctccaccgatcgaacgttcgacgtcgaaccaccactagct |
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| Protein seq | LMDHLNSANGAIHHYKGVSTDRTFDVEPPLA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.262758 | 0.0 | 2.832543 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0214900 | SBH | 0.341938 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g10840 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0214900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007300 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007370 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007190 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007200 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007150 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0095300 | RBH | 3.9562855 | 0.842782 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007130 | SBH | 0.0 | 0.207704 | 0.667090 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0101900 | RBH | 0.448861 | 0 | 0.025984 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007300 | RBH | 0.475911 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007160 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007190 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0064570 | SBH | 0.0 | 0.0 | 0.245284 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007260 | RBH | 0.470701 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007320 | RBH | 0.0 | 1.878412 | 8.329061 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007130 | SBH | 0.0 | 3.412085 | 0.000000 |
