Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g04680 | OGI:11006690 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:1995427-1997202 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCCAGTGATCAGTCCATCGTCATGTCCGAGCAACAGCGAGCTGTGTTTTGCTTGACATTGATGGCCGTCACGTACGGCCACTGCCGGCAGCCAGCCGACGCCGAACTGCTGCATAGGCTGCAACGTGCTGATCAGCCGCCGCCCATCCGCGGCGCTAGGGTGGTCGAAAACACCGAGCCTAATGTCCTGTTCGCGTATACTCCACACAATGGTTTATTGGTTTGTCACCGGAGTTCAACGACGACGACGGCGTTGCTGATTATTTTGCAGCCGATGATGACGAAGCTTACAGCAACGGTGGCTTCGGCGCGGTGCCGGCGTTGAGCGAGGCCATCGTTAGCCTGCCGGAGATGGCCGTCGGCTGCGGCTGCGGCGGCGGCGGCGAGGCGAGGGAGAAGGAGTGCGGGGTGTGTCTAGAGGGGTTCGAGGAGGGTGAAAAGCTCAGGAAGATGCCATGCGAGCACTACTTCCATGAGAGCTGCGTTTTCAAATGGCTTCAGGTCAGCCGTCTTTGTCCCTACTGTCGCTTCGCCATGCCTGCGGCTGAGGAGGAGGAACATAACAATGATGAAGAAGAAGACGAAGCAATGATATGCATCCGTTTCTTGTTCCCTGAGTAGATTAGTTTAATGTTCGGTATTCAGCAAGGAAGCACTTTTTTCCCGCTTTGTTATGTTTAACGATGAAACTAGAAGAAAGTGTAGTTGCTCATACACTGGGGTTATGATATCTTTTGATTATATAGAGAGTATTCACCGTGCATCTTTCATGAAGGCAACTTCTTAAGTTAAATTATCGGAATTTTTTAAACAAAATTATAATATTAATCGCTCGTGAGACCAACTTCGTTGTAGTTTAAGCCATTCTTCAGATTGGAGTTAAAAATTTCTTGTCAAGTGGAAGAATTTCAGCGCCGAGACCTTCTGAATCGAAGGCCAACATTTCGAGTTGAAACTTATATTGTTCTGAATCGAAGGCCAACATTTCGAGTTGAAACTTATATTGTTTTGAGTTAATGGGAAAACGTTGCATGTAGAGGTGGCCACTGCAGATAGCGGCAGGGTCGACACAGGCACGCAGCACCGGAACATAAGAAACGAATTCGAGGCAGAATCCCAATCAGATCGAAGAAACAATAGTGATGTCCCAGTTAATCGAGAGTGATTCGGATTCCGATCTGCCTCTTACAAAAAGAAACGATTCTAGCAGCTTAATCAGCAATAGCTCAATACTCTGTTGGTTTTGCCCCATAGCCACCGTACGTCTCCGATCTACGTTCGCGGCCAATCCAGTCACATATCCACTTCAAAACTCAAAGCAACAATGGCCGATGAACAGATCAGAGACCTGAACTTGTCGGAGACCCATACGTTGCTGCTCATCAACCTTTATTTGTCACACGTACAGGGGCCGAGCTACGTTCCACACGGTGTTGAATCAGCATACATCCACATCAATCGTGATATCGAAGAAGATGACGACACGTACAGTGATGACGGGTTCTGCGCCGTCCCGGCCTCCAGCGACGCCATCGCTGCGCTGCCAGTGCCAGAGACGACGGTGAGTGAGACCGAGACGAGGGAGGAGGAAGCATGTGCAGTTTGCCTAGAGGGATTTAAGGAGGGTGACAGAGTCAAGAAGATGCCTTGCTCTCATGACTTCCACGCGAATTGCATCTCTGAATGGCTTAGGGTGAGCCGCCTCTGTCCACACTGCCGTTTTGCTCTGCCTGCTGAGAGGGATTCTGAACAGAAAAACCCAGAAGAAGCGTGA
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| CDS seq | ATGGCCAGTGATCAGTCCATCGTCATGTCCGAGCAACAGCGAGCTGTGTTTTGCTTGACATTGATGGCCGTCACGTACGGCCACTGCCGGCAGCCAGCCGACGCCGAACTGCTGCATAGGCTGCAACGTGCTGATCAGCCGCCGCCCATCCGCGGCGCTAGGGTGGTCGAAAACACCGAGCCTAATGTCCTGTTCGCGTATACTCCACACAATGCCGATGATGACGAAGCTTACAGCAACGGTGGCTTCGGCGCGGTGCCGGCGTTGAGCGAGGCCATCGTTAGCCTGCCGGAGATGGCCGTCGGCTGCGGCTGCGGCGGCGGCGGCGAGGCGAGGGAGAAGGAGTGCGGGGTGTGTCTAGAGGGGTTCGAGGAGGGTGAAAAGCTCAGGAAGATGCCATGCGAGCACTACTTCCATGAGAGCTGCGTTTTCAAATGGCTTCAGGGGCCGAGCTACGTTCCACACGGTGTTGAATCAGCATACATCCACATCAATCGTGATATCGAAGAAGATGACGACACGTACAGTGATGACGGGTTCTGCGCCGTCCCGGCCTCCAGCGACGCCATCGCTGCGCTGCCAGTGCCAGAGACGACGGTGAGTGAGACCGAGACGAGGGAGGAGGAAGCATGTGCAGTTTGCCTAGAGGGATTTAAGGAGGGTGACAGAGTCAAGAAGATGCCTTGCTCTCATGACTTCCACGCGAATTGCATCTCTGAATGGCTTAGGGTGAGCCGCCTCTGTCCACACTGCCGTTTTGCTCTGCCTGCTGAGAGGGATTCTGAACAGAAAAACCCAGAAGAAGCGTGA
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| Protein seq | MASDQSIVMSEQQRAVFCLTLMAVTYGHCRQPADAELLHRLQRADQPPPIRGARVVENTEPNVLFAYTPHNADDDEAYSNGGFGAVPALSEAIVSLPEMAVGCGCGGGGEAREKECGVCLEGFEEGEKLRKMPCEHYFHESCVFKWLQGPSYVPHGVESAYIHINRDIEEDDDTYSDDGFCAVPASSDAIAALPVPETTVSETETREEEACAVCLEGFKEGDRVKKMPCSHDFHANCISEWLRVSRLCPHCRFALPAERDSEQKNPEEA |
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| Function | E3 ubiquitin-protein ligase RING1-like [UniProtKB/Swiss-Prot:Q8LPN7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g04680 | LOC_Os11g04680.1 | Chr11 | 1995427 | 1997202 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCAGTGATCAGTCCATCGTCATGTCCGAGCAACAGCGAGCTGTGTTTTGCTTGACATTGATGGCCGTCACGTACGGCCACTGCCGGCAGCCAGCCGACGCCGAACTGCTGCATAGGCTGCAACGTGCTGATCAGCCGCCGCCCATCCGCGGCGCTAGGGTGGTCGAAAACACCGAGCCTAATGTCCTGTTCGCGTATACTCCACACAATGCCGATGATGACGAAGCTTACAGCAACGGTGGCTTCGGCGCGGTGCCGGCGTTGAGCGAGGCCATCGTTAGCCTGCCGGAGATGGCCGTCGGCTGCGGCTGCGGCGGCGGCGGCGAGGCGAGGGAGAAGGAGTGCGGGGTGTGTCTAGAGGGGTTCGAGGAGGGTGAAAAGCTCAGGAAGATGCCATGCGAGCACTACTTCCATGAGAGCTGCGTTTTCAAATGGCTTCAGGGGCCGAGCTACGTTCCACACGGTGTTGAATCAGCATACATCCACATCAATCGTGATATCGAAGAAGATGACGACACGTACAGTGATGACGGGTTCTGCGCCGTCCCGGCCTCCAGCGACGCCATCGCTGCGCTGCCAGTGCCAGAGACGACGGTGAGTGAGACCGAGACGAGGGAGGAGGAAGCATGTGCAGTTTGCCTAGAGGGATTTAAGGAGGGTGACAGAGTCAAGAAGATGCCTTGCTCTCATGACTTCCACGCGAATTGCATCTCTGAATGGCTTAGGGTGAGCCGCCTCTGTCCACACTGCCGTTTTGCTCTGCCTGCTGAGAGGGATTCTGAACAGAAAAACCCAGAAGAAGCGTGA
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| Protein seq | MASDQSIVMSEQQRAVFCLTLMAVTYGHCRQPADAELLHRLQRADQPPPIRGARVVENTEPNVLFAYTPHNADDDEAYSNGGFGAVPALSEAIVSLPEMAVGCGCGGGGEAREKECGVCLEGFEEGEKLRKMPCEHYFHESCVFKWLQGPSYVPHGVESAYIHINRDIEEDDDTYSDDGFCAVPASSDAIAALPVPETTVSETETREEEACAVCLEGFKEGDRVKKMPCSHDFHANCISEWLRVSRLCPHCRFALPAERDSEQKNPEEA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0142800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04450 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0142800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002810 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002870 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002830 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002670 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002910 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0037600 | RBH | 0.029483 | 0.0108645 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002890 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0035900 | RBH | 0.149387 | 0.2336135 | 0.0063185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002760 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002890 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002870 | SBH | 4.926410 | 11.458938 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002800 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002830 | SBH | 0.0 | 0.749972 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002800 | SBH | 1.075840 | 7.269472 | 4.370488 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002970 | SBH | 0.0 | 0.0 | 0.0 |
