Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g04450 | OGI:12005110 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:1896035-1898478 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCCGGTGATCAGTCCATCGTGATGTCCGAGCAACAGCGAGCTGAGTTTTGCCTGACGTTGATGGCCGTAATGTACGGCCACACCCGGCAGCCAGCCGACGCCGAGCTGCTGCGAAGGCCGCAACGCCGCCGTGCTGCTGCTGCTGCTGATCCGCCGCCGCACATCCGCAACGCAAGTGTGGTCGAAAACACCGAGCCTGATGTCCTGTTCGCGTATACTCCACACGATGGTTTGTCACCGGAGTTCGACGATGACAGCGGCGGCGTTGCTGATTATTTTGCAGCCGATGATGACGAAGCTTACAGCAACGGTGGCTTCGGCGCGGTGCCGGCGTTGTCCGAGGCCATCGTTAGCATGCCGGAGTTGTCCGTCGGCGAGGCGAGGGAGAAGCAGTGTGGGGTGTGTCTAGAGGGGTTCGAGGAGGGTGACAAGCTCAGGAAGATGCCATGCGAGCACTACTTCCATGAGAGCTGCGTTTTCAAATGGCTTCAGGTCAGCCGTCTTTGTCCCTACTGTCTCTTCGCCATGCCTGCGGCTGAGGAGGAGGAACATAACAATGATGATGAAGAAGAAGAAGACGAAGCAATGATGTGCATCCGTTTCTTGTTCCCAGAGTAGATTAGTTCAATGTTCGGTATTCAGCAAGGAAGCACTTTTTTCCCGCTTCGTTATGTGTAACAATGAAACTAGAAGAAAGTGCAGTTGCTCATACACTGGGGTTATGATATCTTGTGGAGAATCTTTCATGAAGGCAACTTCTTAAGTTAAATTATCAGATGAGTTTAAACAAAATTATAATATTAATCGCTCGTGAGACCAACTTCATTGTAATTTAAGCCAAAATTTCTAGTCAAGTGGAAGAATTTCAGCGCCAACCTTCTGAATTGAAGGCCAACATTTCGAGTTGAAAACTTGTATTGTTTTGAGTTGATGGGAAAACATTGCATGTAGAGGTGGCCAACTGCAGATAGCGGCAGGGTCGACACAGGCACGCAGCACCGGAACATAAGAAACGAATTCGAGGCAGAATCCCAATCAGACCGAGAAACAATAATGATGTCCCAGTTGATCGAGAGTGATTCGGATTCCGATCTGCCTCTTACAAAAGGGAACGATTCTAGCAGCTTAGTTAGCAATAGTTCAATACACTCTGTTGGTTTTGCCCCACAGCCACATCCACTTCAAAACTCAAAGCAACAATGGCTGATGAACAGATCAGAGACCTGAACTTGTCGGAGACCCATACGTTGCTGCTCATCAACCTTTACTTATCACACGTACAGGGGCCGAGCTACGTTCCACACGGTGTTGAATCAGCATACATCCACATCAATCGTGATATCGAAGAAGATGACGACGCGTACAGTGAGGACGGGTTCTGCGCCGTCCCGGCCTCCAGCGACGCCATCGCTGCGCTGCCGGAGACGACGGTGAGTGAGACCGAGACGAGGGAGGAGGAAGCATGCGCGGTTTGCCTAGAGGGATTTAAGGAGGGTGACAAAGTCAAGAAGATGCCTTGCTCTCATGACTTCCACTCGAGTTGCATCTCTGACTCGGAAATGCTACTAAGCCAGGGATCGCCCAGAGCGATCGGTTCTCTCCCCCTCCCCCTCCCCCTCTCTCTCTCCACCTGGTTTCCTTTTTTGGCACCATATTACTTTTCTATTTTAGTAAATTTATACACCTCAAGTTTACACATTTAAAGTTTAGAGACCAAAAGTTTATAAGTCAAAAGTTTATATATCCTATTCAAATTTGAATTTGAATTCAAATACTTTTTATATATAGTATTTCTATACATCTAAAGTTTATACACCTAAAGTTTATAGACCTAAAGTTTATATATCCGATTCAAATTTGAATTTGGATTATGTCCGATTCAAATTTGAATTTGAATTCAAATATCCGATTCAAATTTGAATTTGAATTCAAATATTTTTCATATATAGTATTTCTATACATATAAAGTTTATACACCTAAAGTTTATAGACCTAAAGTTTATATACCCGATTTCAAATTTGAATTTGAATTATACCCGATTTCAAATTTGAATTTGAATTATACCCGATTTCAAATTTGAATTTGAATTATATCTGATTCAAATTTGAATTTGAATTCAAATTTCTGATTTAAATTTGAATTTAAATTCAAATATTTTTCATATATAGTATTTCTATACCTCTAAAGTTTATACACCTAAAGTTTATAGACCTAAAGTTTATAAATCCAAAGTTTATAAGTCAAAAGTTTACGTACCCGATTCAAATTTGAATTTGAATTCAAATTTTTTATACATAAATTTTTCTAACTTTTTGTTTTTTTTAAATTTTTGTGTGGTGTACTGTAACAGGAAAAGAAGGGGAGGAGGAAGGGAAGAAAGGAGGTGCGGCACCGATCGCTGGCTAAGCGAGCGATCGCCCATCAGGCGCCTCCTCTCTGA
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| CDS seq | ATGGCCGGTGATCAGTCCATCGTGATGTCCGAGCAACAGCGAGCTGAGTTTTGCCTGACGTTGATGGCCGTAATGTACGGCCACACCCGGCAGCCAGCCGACGCCGAGCTGCTGCGAAGGCCGCAACGCCGCCGTGCTGCTGCTGCTGCTGATCCGCCGCCGCACATCCGCAACGCAAGTGTGGTCGAAAACACCGAGCCTGATGTCCTGTTCGCGTATACTCCACACGATGGTTTGTCACCGGAGTTCGACGATGACAGCGGCGGCGTTGCTGATTATTTTGCAGCCGATGATGACGAAGCTTACAGCAACGGTGGCTTCGGCGCGGTGCCGGCGTTGTCCGAGGCCATCGTTAGCATGCCGGAGTTGTCCGTCGGCGAGGCGAGGGAGAAGCAGTGTGGGGTGTGTCTAGAGGGGTTCGAGGAGGGTGACAAGCTCAGGAAGATGCCATGCGAGCACTACTTCCATGAGAGCTGCGTTTTCAAATGGCTTCAGGGGCCGAGCTACGTTCCACACGGTGTTGAATCAGCATACATCCACATCAATCGTGATATCGAAGAAGATGACGACGCGTACAGTGAGGACGGGTTCTGCGCCGTCCCGGCCTCCAGCGACGCCATCGCTGCGCTGCCGGAGACGACGGAAAAGAAGGGGAGGAGGAAGGGAAGAAAGGAGGTGCGGCACCGATCGCTGGCTAAGCGAGCGATCGCCCATCAGGCGCCTCCTCTCTGA
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| Protein seq | MAGDQSIVMSEQQRAEFCLTLMAVMYGHTRQPADAELLRRPQRRRAAAAADPPPHIRNASVVENTEPDVLFAYTPHDGLSPEFDDDSGGVADYFAADDDEAYSNGGFGAVPALSEAIVSMPELSVGEAREKQCGVCLEGFEEGDKLRKMPCEHYFHESCVFKWLQGPSYVPHGVESAYIHINRDIEEDDDAYSEDGFCAVPASSDAIAALPETTEKKGRRKGRKEVRHRSLAKRAIAHQAPPL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g04450 | LOC_Os12g04450.1 | Chr12 | 1896035 | 1898478 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCGGTGATCAGTCCATCGTGATGTCCGAGCAACAGCGAGCTGAGTTTTGCCTGACGTTGATGGCCGTAATGTACGGCCACACCCGGCAGCCAGCCGACGCCGAGCTGCTGCGAAGGCCGCAACGCCGCCGTGCTGCTGCTGCTGCTGATCCGCCGCCGCACATCCGCAACGCAAGTGTGGTCGAAAACACCGAGCCTGATGTCCTGTTCGCGTATACTCCACACGATGGTTTGTCACCGGAGTTCGACGATGACAGCGGCGGCGTTGCTGATTATTTTGCAGCCGATGATGACGAAGCTTACAGCAACGGTGGCTTCGGCGCGGTGCCGGCGTTGTCCGAGGCCATCGTTAGCATGCCGGAGTTGTCCGTCGGCGAGGCGAGGGAGAAGCAGTGTGGGGTGTGTCTAGAGGGGTTCGAGGAGGGTGACAAGCTCAGGAAGATGCCATGCGAGCACTACTTCCATGAGAGCTGCGTTTTCAAATGGCTTCAGGGGCCGAGCTACGTTCCACACGGTGTTGAATCAGCATACATCCACATCAATCGTGATATCGAAGAAGATGACGACGCGTACAGTGAGGACGGGTTCTGCGCCGTCCCGGCCTCCAGCGACGCCATCGCTGCGCTGCCGGAGACGACGGAAAAGAAGGGGAGGAGGAAGGGAAGAAAGGAGGTGCGGCACCGATCGCTGGCTAAGCGAGCGATCGCCCATCAGGCGCCTCCTCTCTGA
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| Protein seq | MAGDQSIVMSEQQRAEFCLTLMAVMYGHTRQPADAELLRRPQRRRAAAAADPPPHIRNASVVENTEPDVLFAYTPHDGLSPEFDDDSGGVADYFAADDDEAYSNGGFGAVPALSEAIVSMPELSVGEAREKQCGVCLEGFEEGDKLRKMPCEHYFHESCVFKWLQGPSYVPHGVESAYIHINRDIEEDDDAYSEDGFCAVPASSDAIAALPETTEKKGRRKGRKEVRHRSLAKRAIAHQAPPL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0143750 | SBH | 0.0 | 0.0 | 0.677317 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g04680 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0143750 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002640 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002860 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002880 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002670 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002910 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0033300 | RBH | 0 | 0.2459015 | 0.072465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002890 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0035200 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002670 | SBH | 0.045569 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002910 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002850 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002830 | SBH | 0.0 | 0.749972 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002730 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002970 | SBH | 0.0 | 0.0 | 0.0 |
