Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0143750 | OGI:12005830 | 1/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:2152838-2153718 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCGGAGGTTTGGCAGCCTCCTCTTCCTTCCGCCGACTCGTTTCATCATCTCCGTCGTCGATCGCGTCGCCGCCGTCGTGCTCCTGGCCGGAGAGATGAATATCCATACAGAAGTATACTATCGCAATGGCCCCCCTCTTCGATGAGCAGGGGAATCTTATCTATAGCCACCTGGTTATTGGCGACCGGAGGCTTCCCCTGAGGGTGGAACAAAATCCGCCGCCGCCGCCGGAAGCTTACGTATCATCATCCGAAGACGTGTATTCATCAATGTCATCTGGCAACGAGGAGGAGATCAATCACCCCACGCCACAGATCTCCGACGAGGCGGCTGCGTCCTACAGGCGAGCTGAGCAAGGCCATCCAAGGCCTGCGTGAGGTGACGGCGGCCGGCGCGAGGGAGGAGGAGTGCGCCGTTTGCTTGCAGGATTTCGTGGCGGAGGAGAAGCTGAGGATGATGCCGTGCTCCCACACCTTCCACCAGCGCTGCATCTTCGACTGGCTCCGGCTCAGCTGCATCTGCCCTCTCTGCCGCCGCGCTCTACCCACACAGCACTACAGCAGGAGGATGACGACAAGCTTGGGTGCCCGGAGCTAGGAGCAACCAGCTGATGAACCGGCCAAAAGGCTGTATTTTGTTCCTCTGTTCACCTAAATATCCTCTGCATTAGGCAGATTGGTGATTTGTCTGTTCCAAGAGTTGTGTTGTACAGACTGAGACGATGTTTTATCGTCCCATCAATGTAAAGCTAAAGCTAGAAGCATGTTTCTCTATCGATCTATTCCAAGATCGAGTAGTACTTTTCAATTGGAAGCATGTTATGTATCTCCTCTACCGAATATCAAACTACAAGTACAATGGCATGTTCATTCCAACTCTC
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| CDS seq | GGGTGGAACAAAATCCGCCGCCGCCGCCGGAAGCTTACGTATCATCATCCGAAGACGTGTATTCATCAATGTCATCTGGCAACGAGGAGGAGATCAATCACCCCACGCCACAGATCTCCGACGAGGCGGCTGCGTCCTACAGGCGAGCTGAGCAAGGCCATCCAAGGCCTGCGTGAGGTGACGGCGGCCGGCGCGAGGGAGGAGGAGTGCGCCGTTTGCTTGCAGGATTTCGTGGCGGAGGAGAAGCTGAGGATGATGCCGTGCTCCCACACCTTCCACCAGCGCTGCATCTTCGACTGGCTCCGGCTCAGCTGCATCTGCCCTCTCTGCCGCCGCGCTCTACCCACACAGCACTACAGCAGGAGGATGACGACAAGCTTGGGTGCCCGGAGCTAG |
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| Protein seq | GWNKIRRRRRKLTYHHPKTCIHQCHLATRRRSITPRHRSPTRRLRPTGELSKAIQGLREVTAAGAREEECAVCLQDFVAEEKLRMMPCSHTFHQRCIFDWLRLSCICPLCRRALPTQHYSRRMTTSLGARS |
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| Function | E3 ubiquitin-protein ligase RNF115 [UniProtKB/Swiss-Prot:Q9D0C1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0143750 | Os12t0143750-01 | Chr12 | 2152838 | 2153718 | + | irgsp1_rep | ||
| CDS seq | GGGTGGAACAAAATCCGCCGCCGCCGCCGGAAGCTTACGTATCATCATCCGAAGACGTGTATTCATCAATGTCATCTGGCAACGAGGAGGAGATCAATCACCCCACGCCACAGATCTCCGACGAGGCGGCTGCGTCCTACAGGCGAGCTGAGCAAGGCCATCCAAGGCCTGCGTGAGGTGACGGCGGCCGGCGCGAGGGAGGAGGAGTGCGCCGTTTGCTTGCAGGATTTCGTGGCGGAGGAGAAGCTGAGGATGATGCCGTGCTCCCACACCTTCCACCAGCGCTGCATCTTCGACTGGCTCCGGCTCAGCTGCATCTGCCCTCTCTGCCGCCGCGCTCTACCCACACAGCACTACAGCAGGAGGATGACGACAAGCTTGGGTGCCCGGAGCTAG
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| Protein seq | GWNKIRRRRRKLTYHHPKTCIHQCHLATRRRSITPRHRSPTRRLRPTGELSKAIQGLREVTAAGAREEECAVCLQDFVAEEKLRMMPCSHTFHQRCIFDWLRLSCICPLCRRALPTQHYSRRMTTSLGARS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0143750 | RBH | 0.0 | 0.0 | 0.677317 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04590 | SBH | 0.079601 | 0.324713 | 0.765924 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0146750 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002640 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003170 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002880 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002670 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002910 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0037000 | SBH | 0.042774 | 0 | 0.256267 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002890 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0039500 | SBH | 0 | 0.013355 | 0.1900315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002670 | SBH | 0.045569 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002890 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002910 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002850 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002830 | SBH | 0.0 | 0.749972 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G003120 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0003130 | SBH | 0.0 | 0.0 | 0.0 |
