Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_12G0039500 | OGI:12005720 | 3/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr12:2157095-2157292 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACTGCCCCGTTGGCATCGGGAATCGGCAGAGCGGGCAGAGATGGCTGAGCGAGAGCCAATCCAAGATGCAGGTCGCATGGAAGCAATGCGAGCAGGGCATCCTCGTCAGCTTCTCTCCTTGGTCGAAGCCCTCAAAGCACACAGCGCAGTCGCTCTCCCTCGCCTCGCTCACCTGCGCTTCCTGCAGCTCGGCCAT |
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| CDS seq | ATGGCCGAGCTGCAGGAAGCGCAGGTGAGCGAGGCGAGGGAGAGCGACTGCGCTGTGTGCTTTGAGGGCTTCGACCAAGGAGAGAAGCTGACGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTTGGATTGGCTCTCGCTCAGCCATCTCTGCCCGCTCTGCCGATTCCCGATGCCAACGGGGCAGTAG |
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| Protein seq | MAELQEAQVSEARESDCAVCFEGFDQGEKLTRMPCSHCFHATCILDWLSLSHLCPLCRFPMPTGQ |
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| Function | E3 ubiquitin-protein ligase RDUF1 [UniProtKB/Swiss-Prot:Q9SNB6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_12G0039500 | OsZS97_12T0039500.1 | Chr12 | 2157095 | 2157292 | - | makerRMon | ||
| CDS seq | ATGGCCGAGCTGCAGGAAGCGCAGGTGAGCGAGGCGAGGGAGAGCGACTGCGCTGTGTGCTTTGAGGGCTTCGACCAAGGAGAGAAGCTGACGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTTGGATTGGCTCTCGCTCAGCCATCTCTGCCCGCTCTGCCGATTCCCGATGCCAACGGGGCAGTAG |
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| Protein seq | MAELQEAQVSEARESDCAVCFEGFDQGEKLTRMPCSHCFHATCILDWLSLSHLCPLCRFPMPTGQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.013355 | 0.1900315 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0140200 | SBH | 0.0 | 0.179629 | 2.416075 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04660 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0140700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002730 | SBH | 0.0 | 0.0 | 1.293752 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003170 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0003020 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002810 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0003000 | SBH | 1.418157 | 0.0 | 1.519101 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0037000 | RBH | 0.042774 | 0 | 0.256267 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002980 | SBH | 0.0 | 0.109188 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0035900 | SBH | 0.149387 | 0.2336135 | 0.0063185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002760 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002980 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0003010 | SBH | 1.603629 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002800 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002920 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002830 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0003060 | SBH | 0.0 | 0.0 | 0.0 |
