Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g04590 | OGI:12005250 | 10/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:1938983-1941122 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTCATTATCTGAATTTTTTTTATTTCTAGTTTTCCTGCGAGTCCCTTATGGAATATTCCGTCTCCAGTTCTCCCATGAATCCCTTATGGAAATTTGTATCGAAATGTTGAAATTTACATAGTTATATACTTCTGCTTTCTTGATCTTCAATTCAAAGTCTGTAATAGCTCTTTGCATTATCCTTCTTTTTCTCTGTTGTTCTCATTCTTGTTTCTGCGCAAATATGTTCATAGTACAAGTCTGCTCCTCCTTATACGAAGGTGTTCCTACCTCTGTTACTATGTCTGAATTTTCTTCTTTTCTGAACATTCTGAAACCAAAGCAAGAGCAGAGCTCGTGTCAGCAATTTCCCAAGATCAAACTCACCAAAGCACTCACCCTCTGAAATCTCTGAATATTGTCGGACGTGTACAGTACACTGAAGAACTCAGAAAGCAGAGAAACAAGGGAGATGGATTTTGATACCTCTAAGGGGATTGTCCCCTCGTTGTTTACATGCCACTCTAATAGTTATGAAAAAAATTAAGAATATGTTTTAATATGTAATATATCATTCCATAAACATGCAAGTTCAAATTCAATACGATCTGAACCGGGTCATCGCAACTATAAAACAGGAAACATGTAAACCTTAAAAGAACTATTCTTTCGGCCGAATCCAAAGTGTTTCCAGCCGGCTAACTACATGCAAGCAAACAGATAAATCGATGCTCAAGATTACATGTTTATATTCCAACAGCTCATACATGGCGATGTCGTGATGTCGCTGTGGTAATGGCTGTCCTCGGGCTCCAGGACATGAACGCCAATGAGGAGTGCAAGGAGCTTTCTTTGGTAGAGGATGAAGCTTCTACTGCAAGAGAAGCAAGCGAGCTGGGAAGAACTAGAGGAAGCTTTTAGCGGGAAAGTATGTTCATCTTTCGAGGGGAATCCCAATGTTGGCACTGTAATACCCCGAAACAATAGCAATCCGATCATAAAACATGAATAATAACAGATGGTACATGAATGGAATGGTGTTTGATGGAGCATGAGTACGCACAAGAGTTGTATGATTTGTTTCATCTCTGGCCGCGGCGTTATCCTCTTACAGCCTAGTAAGATTGGTCTTGGGTTGGCATCGGGAATCTGCAGAGCGGGCAGCGATGGCTGAGGCGGAGCCAATCCAAGATGCAGGTCGCATGGAAGCAATGCGAGCAGGGCATCCTCGTCAGCTTCTCTCCCGCCTCGAAATCCTCCAGGCACACAGCGCACCCGCGTTCCCTGGCGTCGCTTGCCATCGCCTCCTGCAGCTCGGCCATGGCCTTGCTCGACGCGGGGACAGCGCCGAACCCACCGTTCCTGTACGCATCCTCCACCTCCACTACTCCATCCATGGCAATGGCAGTGGCAGTGCCACGGCGCTGACGCTGAAGAATATGATCGCGAACCTGATCAACAAGCTGCTGCAAGAAGTCGGCGTCCAGTTCTATGCGGCCCCGACGAATGTCAGACCTCAAGCGCTCGCGAATGATCTCATGAGCTTCTTCCTGCGTTAATAGCGTCCGACTACCTGGGCGGTACATCAAGTTGGTGCAGTGGATCCGGTTGCCAATCTTGAAAGTATAACGGGGGATGCCTTCGAAGCTCAAGTTCTCGATGGGAGGGAAATCTCTTGGTAGTGCTCTTGCGACCGCGGAGGCATCCACCTCCATCGATCTGCGGCAGCAACACACGCCGGAGGCGCTCACCGTACGTCCCCTGCACAAGAGATCGACAATGGTGGAGGCGAGCAAATCAATAGGCGGTCGGGTGGGGGGGAATGGATCAGGATTCAGGAGTTAAACGAAACCAAGACACGATCGAGCCCCTACCTGCAGAGTTTATAGACGAAGAAATCGATCGGACTCCGCGTCCCGATCGAAATCGAGAGTGAATCCGACTCGGATCCGCCCCCAAACGTGGATCAACGAGCGGCGCGGGTGGGGACAGAGACTGCGGCGGTGGAGGAAAACAGTGAGCGACGCGGCTGGGGTGGAGGTAGCGACTAGCGAGCGTCACGGCTGTAAACGGAGGCAGCGAGCGGCGCGGCTGGGGACGGAGGAAGCGAGAGGCGCGGTGGAGTAGTGGGGACGAGATCCACATCCACCACGGGATTTTT
More
|
||||||||||
| CDS seq | ATGGAGGTGGATGCCTCCGCGGTCGCAAGAGCACTACCAAGAGATTTCCCTCCCATCGAGAACTTGAGCTTCGAAGGCATCCCCCGTTATACTTTCAAGATTGGCAACCGGATCCACTGCACCAACTTGATGTACCGCCCAGGTAGTCGGACGCTATTAACGCAGGAAGAAGCTCATGAGATCATTCGCGAGCGCTTGAGGTCTGACATTCGTCGGGGCCGCATAGAACTGGACGCCGACTTCTTGCAGCAGCTTGTTGATCAGGTTCGCGATCATATTCTTCAGCGTCAGCGCCGTGGCACTGCCACTGCCATTGCCATGGATGGAGTAGTGGAGGTGGAGGATGCGTACAGGAACGGTGGGTTCGGCGCTGTCCCCGCGTCGAGCAAGGCCATGGCCGAGCTGCAGGAGGCGATGGCAAGCGACGCCAGGGAACGCGGGTGCGCTGTGTGCCTGGAGGATTTCGAGGCGGGAGAGAAGCTGACGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTTGGATTGGCTCCGCCTCAGCCATCGCTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAG
More
|
||||||||||
| Protein seq | MEVDASAVARALPRDFPPIENLSFEGIPRYTFKIGNRIHCTNLMYRPGSRTLLTQEEAHEIIRERLRSDIRRGRIELDADFLQQLVDQVRDHILQRQRRGTATAIAMDGVVEVEDAYRNGGFGAVPASSKAMAELQEAMASDARERGCAVCLEDFEAGEKLTRMPCSHCFHATCILDWLRLSHRCPLCRFPMPTQDQSY |
||||||||||
| Function | E3 ubiquitin-protein ligase RING1-like [UniProtKB/Swiss-Prot:Q8LPN7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g04590 | LOC_Os12g04590.1 | Chr12 | 1939516 | 1941122 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGTGGATGCCTCCGCGGTCGCAAGAGCACTACCAAGAGATTTCCCTCCCATCGAGAACTTGAGCTTCGAAGGCATCCCCCGTTATACTTTCAAGATTGGCAACCGGATCCACTGCACCAACTTGATGTACCGCCCAGGTAGTCGGACGCTATTAACGCAGGAAGAAGCTCATGAGATCATTCGCGAGCGCTTGAGGTCTGACATTCGTCGGGGCCGCATAGAACTGGACGCCGACTTCTTGCAGCAGCTTGTTGATCAGGTTCGCGATCATATTCTTCAGCGTCAGCGCCGTGGCACTGCCACTGCCATTGCCATGGATGGAGTAGTGGAGGTGGAGGATGCGTACAGGAACGGTGGGTTCGGCGCTGTCCCCGCGTCGAGCAAGGCCATGGCCGAGCTGCAGGAGGCGATGGCAAGCGACGCCAGGGAACGCGGGTGCGCTGTGTGCCTGGAGGATTTCGAGGCGGGAGAGAAGCTGACGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTTGGATTGGCTCCGCCTCAGCCATCGCTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAG
More
|
|||||||
| Protein seq | MEVDASAVARALPRDFPPIENLSFEGIPRYTFKIGNRIHCTNLMYRPGSRTLLTQEEAHEIIRERLRSDIRRGRIELDADFLQQLVDQVRDHILQRQRRGTATAIAMDGVVEVEDAYRNGGFGAVPASSKAMAELQEAMASDARERGCAVCLEDFEAGEKLTRMPCSHCFHATCILDWLRLSHRCPLCRFPMPTQDQSY |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g04590 | LOC_Os12g04590.2 | Chr12 | 1938983 | 1941122 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGTGGATGCCTCCGCGGTCGCAAGAGCACTACCAAGAGATTTCCCTCCCATCGAGAACTTGAGCTTCGAAGGCATCCCCCGTTATACTTTCAAGATTGGCAACCGGATCCACTGCACCAACTTGATGTACCGCCCAGGTAGTCGGACGCTATTAACGCAGGAAGAAGCTCATGAGATCATTCGCGAGCGCTTGAGGTCTGACATTCGTCGGGGCCGCATAGAACTGGACGCCGACTTCTTGCAGCAGCTTGTTGATCAGGTTCGCGATCATATTCTTCAGCGTCAGCGCCGTGGCACTGCCACTGCCATTGCCATGGATGGAGTAGTGGAGGTGGAGGATGCGTACAGGAACGGTGGGTTCGGCGCTGTCCCCGCGTCGAGCAAGGCCATGGCCGAGCTGCAGGAGGCGATGGCAAGCGACGCCAGGGAACGCGGGTGCGCTGTGTGCCTGGAGGATTTCGAGGCGGGAGAGAAGCTGACGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTTGGATTGGCTCCGCCTCAGCCATCGCTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAG
More
|
|||||||
| Protein seq | MEVDASAVARALPRDFPPIENLSFEGIPRYTFKIGNRIHCTNLMYRPGSRTLLTQEEAHEIIRERLRSDIRRGRIELDADFLQQLVDQVRDHILQRQRRGTATAIAMDGVVEVEDAYRNGGFGAVPASSKAMAELQEAMASDARERGCAVCLEDFEAGEKLTRMPCSHCFHATCILDWLRLSHRCPLCRFPMPTQDQSY |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.079601 | 0.324713 | 0.765924 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0140200 | RBH | 0.0 | 0.179629 | 2.416075 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g04690 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0140200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002730 | RBH | 0.0 | 0.0 | 1.293752 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0003010 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0003020 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002810 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0003000 | RBH | 1.418157 | 0.0 | 1.519101 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0034400 | RBH | 0.252039 | 0.324493 | 0.9958005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002980 | RBH | 0.0 | 0.109188 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0036600 | RBH | 0.5470355 | 0.2638865 | 2.3918645 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002980 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0003010 | RBH | 1.603629 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002940 | RBH | 0.0 | 0.0 | 0.625290 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002920 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002830 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0003060 | SBH | 0.0 | 0.0 | 0.0 |
