Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0142800 | OGI:11006690 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:1998790-1999485 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGGGTGAAGAACCATGGTCAAGCGAGGCCTCCGACGATGTCCCCGACACATCGCACATGTCGGACGAACAATTTCAACAGTTCATCGACCAGTACTGGGCAGAGCAAGGATTCAACATTTGGAGTTGGATTCGTGCTTCCAGGACGTCGTCAAGCTCCACGCCGGGGCCAACCAGGCGGACGGCGGCGTCATGGCAGGCCGTCACTTTCGACGGGGACGGCGTCGCGCGCTTCTCCGGCAACTCCGACCGTAGCGGCGGACTCGACGACCAAGCCACCAGCGGCTTCAGCATCGTGGACCTACTGGACGGTATCCTACAAGCGGATGACGACGGCAATGGCGGTGGAGCTACGCCGGCGTCGAGCATGGCGATCGTAAACCTGCCGGAGATTACCGTCGGCGACGAGAAAGGCGAGGCGAAGGACTGCCCGGTGTGCCTTCAGGGCTTCGAGGAGGGCGACAAGCTTAGGAAGATGCCGTGCGCTGATTCGCACTGCTTCCATGAGCAGTGCATATTCAGCTGGCTTCTGATTAACCGCCATTGCCCGCTCTGCCGCTTCCCGTTGCCTGCTGAGACGGAGGAGGATGAAGAGGTGGTCCAGGCAGAGAACGACGACGACGACGATGATGAAGAGACCATCCTATGTCTGCATCGACTGTTCGCTGATGCGGCTGATGAGTATACGAGTTGA
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| CDS seq | ATGGCGGGTGAAGAACCATGGTCAAGCGAGGCCTCCGACGATGTCCCCGACACATCGCACATGTCGGACGAACAATTTCAACAGTTCATCGACCAGTACTGGGCAGAGCAAGGATTCAACATTTGGAGTTGGATTCGTGCTTCCAGGACGTCGTCAAGCTCCACGCCGGGGCCAACCAGGCGGACGGCGGCGTCATGGCAGGCCGTCACTTTCGACGGGGACGGCGTCGCGCGCTTCTCCGGCAACTCCGACCGTAGCGGCGGACTCGACGACCAAGCCACCAGCGGCTTCAGCATCGTGGACCTACTGGACGGTATCCTACAAGCGGATGACGACGGCAATGGCGGTGGAGCTACGCCGGCGTCGAGCATGGCGATCGTAAACCTGCCGGAGATTACCGTCGGCGACGAGAAAGGCGAGGCGAAGGACTGCCCGGTGTGCCTTCAGGGCTTCGAGGAGGGCGACAAGCTTAGGAAGATGCCGTGCGCTGATTCGCACTGCTTCCATGAGCAGTGCATATTCAGCTGGCTTCTGATTAACCGCCATTGCCCGCTCTGCCGCTTCCCGTTGCCTGCTGAGACGGAGGAGGATGAAGAGGTGGTCCAGGCAGAGAACGACGACGACGACGATGATGAAGAGACCATCCTATGTCTGCATCGACTGTTCGCTGATGCGGCTGATGAGTATACGAGTTGA
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| Protein seq | MAGEEPWSSEASDDVPDTSHMSDEQFQQFIDQYWAEQGFNIWSWIRASRTSSSSTPGPTRRTAASWQAVTFDGDGVARFSGNSDRSGGLDDQATSGFSIVDLLDGILQADDDGNGGGATPASSMAIVNLPEITVGDEKGEAKDCPVCLQGFEEGDKLRKMPCADSHCFHEQCIFSWLLINRHCPLCRFPLPAETEEDEEVVQAENDDDDDDEETILCLHRLFADAADEYTS |
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| Function | E3 ubiquitin-protein ligase RNF181 [UniProtKB/Swiss-Prot:Q6GPV5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0142800 | Os11t0142800-00 | Chr11 | 1998790 | 1999485 | + | irgsp1_rep | ||
| CDS seq | ATGGCGGGTGAAGAACCATGGTCAAGCGAGGCCTCCGACGATGTCCCCGACACATCGCACATGTCGGACGAACAATTTCAACAGTTCATCGACCAGTACTGGGCAGAGCAAGGATTCAACATTTGGAGTTGGATTCGTGCTTCCAGGACGTCGTCAAGCTCCACGCCGGGGCCAACCAGGCGGACGGCGGCGTCATGGCAGGCCGTCACTTTCGACGGGGACGGCGTCGCGCGCTTCTCCGGCAACTCCGACCGTAGCGGCGGACTCGACGACCAAGCCACCAGCGGCTTCAGCATCGTGGACCTACTGGACGGTATCCTACAAGCGGATGACGACGGCAATGGCGGTGGAGCTACGCCGGCGTCGAGCATGGCGATCGTAAACCTGCCGGAGATTACCGTCGGCGACGAGAAAGGCGAGGCGAAGGACTGCCCGGTGTGCCTTCAGGGCTTCGAGGAGGGCGACAAGCTTAGGAAGATGCCGTGCGCTGATTCGCACTGCTTCCATGAGCAGTGCATATTCAGCTGGCTTCTGATTAACCGCCATTGCCCGCTCTGCCGCTTCCCGTTGCCTGCTGAGACGGAGGAGGATGAAGAGGTGGTCCAGGCAGAGAACGACGACGACGACGATGATGAAGAGACCATCCTATGTCTGCATCGACTGTTCGCTGATGCGGCTGATGAGTATACGAGTTGA
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| Protein seq | MAGEEPWSSEASDDVPDTSHMSDEQFQQFIDQYWAEQGFNIWSWIRASRTSSSSTPGPTRRTAASWQAVTFDGDGVARFSGNSDRSGGLDDQATSGFSIVDLLDGILQADDDGNGGGATPASSMAIVNLPEITVGDEKGEAKDCPVCLQGFEEGDKLRKMPCADSHCFHEQCIFSWLLINRHCPLCRFPLPAETEEDEEVVQAENDDDDDDEETILCLHRLFADAADEYTS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0142800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g04690 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0139100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002810 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002870 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002830 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002780 | RBH | 0.085971 | 0.348018 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002810 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0038800 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002870 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0036000 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002870 | RBH | 4.926410 | 11.458938 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002800 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002880 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002800 | RBH | 1.075840 | 7.269472 | 4.370488 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002810 | RBH | 0.0 | 0.0 | 0.0 |
