Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0139100 | OGI:12005110 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:1899904-1900590 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCGGATGAAGAACCATGGTCGCGCGACGCCTCCGACGATGTCCCCGACACATCGCACATGTCGGACGAACAATTTCAACAGCTCATCGACCAGTACTGGGCAGAGCAAGGATTCAACATTTGGAGTTGGATTCGTGCTTCCAGGACGTCGTCAAGTTCCACGCCGGGGCCAACCAGGCGGACGGCGGCGTCATGGCTGGCCGTCACTTTCGACGGGGACGGCGTCGCGCGCTTCTCCGGCAACTCCGACCGTAGCGGCGGACTCGACGATCAGGCCACCGGCGGCTTCAGCATCGTGGACCTACTGGACGGTATCCTACAACCGGACGACGACGGCAATGGCGGTGGAGCTACGCCGGCGTCGAGCATGGCGATCGTGAGCCTGCCGGAGATTACCGTCGGCGACGAGAAAGGCGAGGCGAAGGACTGCCCGGTGTGCCTTCAGGGCTTCGAGGAGGGCGACAAGCTGAGGAGGATGCCGTGCGCTGATTCGCACTGCTTCCATGAGCAGTGCATATTCAGCTGGCTCGTGATTAACCGCCATTGCCCGCTCTGCCGCTTTCCGTTGCCTGCTGAGACGGAGGAGGAAGAAGAGGTGGCCCAGGCAGAGAACGACGACGACGATGACGATGGTGAAGAGACAATCCTATGCCTGCATCGACTGTTCGCTAATGCGGCTGATTGA
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| CDS seq | ATGTCGGATGAAGAACCATGGTCGCGCGACGCCTCCGACGATGTCCCCGACACATCGCACATGTCGGACGAACAATTTCAACAGCTCATCGACCAGTACTGGGCAGAGCAAGGATTCAACATTTGGAGTTGGATTCGTGCTTCCAGGACGTCGTCAAGTTCCACGCCGGGGCCAACCAGGCGGACGGCGGCGTCATGGCTGGCCGTCACTTTCGACGGGGACGGCGTCGCGCGCTTCTCCGGCAACTCCGACCGTAGCGGCGGACTCGACGATCAGGCCACCGGCGGCTTCAGCATCGTGGACCTACTGGACGGTATCCTACAACCGGACGACGACGGCAATGGCGGTGGAGCTACGCCGGCGTCGAGCATGGCGATCGTGAGCCTGCCGGAGATTACCGTCGGCGACGAGAAAGGCGAGGCGAAGGACTGCCCGGTGTGCCTTCAGGGCTTCGAGGAGGGCGACAAGCTGAGGAGGATGCCGTGCGCTGATTCGCACTGCTTCCATGAGCAGTGCATATTCAGCTGGCTCGTGATTAACCGCCATTGCCCGCTCTGCCGCTTTCCGTTGCCTGCTGAGACGGAGGAGGAAGAAGAGGTGGCCCAGGCAGAGAACGACGACGACGATGACGATGGTGAAGAGACAATCCTATGCCTGCATCGACTGTTCGCTAATGCGGCTGATTGA
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| Protein seq | MSDEEPWSRDASDDVPDTSHMSDEQFQQLIDQYWAEQGFNIWSWIRASRTSSSSTPGPTRRTAASWLAVTFDGDGVARFSGNSDRSGGLDDQATGGFSIVDLLDGILQPDDDGNGGGATPASSMAIVSLPEITVGDEKGEAKDCPVCLQGFEEGDKLRRMPCADSHCFHEQCIFSWLVINRHCPLCRFPLPAETEEEEEVAQAENDDDDDDGEETILCLHRLFANAAD |
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| Function | E3 ubiquitin-protein ligase RNF181 [UniProtKB/Swiss-Prot:Q6GPV5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0139100 | Os12t0139100-00 | Chr12 | 1899904 | 1900590 | + | irgsp1_rep | ||
| CDS seq | ATGTCGGATGAAGAACCATGGTCGCGCGACGCCTCCGACGATGTCCCCGACACATCGCACATGTCGGACGAACAATTTCAACAGCTCATCGACCAGTACTGGGCAGAGCAAGGATTCAACATTTGGAGTTGGATTCGTGCTTCCAGGACGTCGTCAAGTTCCACGCCGGGGCCAACCAGGCGGACGGCGGCGTCATGGCTGGCCGTCACTTTCGACGGGGACGGCGTCGCGCGCTTCTCCGGCAACTCCGACCGTAGCGGCGGACTCGACGATCAGGCCACCGGCGGCTTCAGCATCGTGGACCTACTGGACGGTATCCTACAACCGGACGACGACGGCAATGGCGGTGGAGCTACGCCGGCGTCGAGCATGGCGATCGTGAGCCTGCCGGAGATTACCGTCGGCGACGAGAAAGGCGAGGCGAAGGACTGCCCGGTGTGCCTTCAGGGCTTCGAGGAGGGCGACAAGCTGAGGAGGATGCCGTGCGCTGATTCGCACTGCTTCCATGAGCAGTGCATATTCAGCTGGCTCGTGATTAACCGCCATTGCCCGCTCTGCCGCTTTCCGTTGCCTGCTGAGACGGAGGAGGAAGAAGAGGTGGCCCAGGCAGAGAACGACGACGACGATGACGATGGTGAAGAGACAATCCTATGCCTGCATCGACTGTTCGCTAATGCGGCTGATTGA
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| Protein seq | MSDEEPWSRDASDDVPDTSHMSDEQFQQLIDQYWAEQGFNIWSWIRASRTSSSSTPGPTRRTAASWLAVTFDGDGVARFSGNSDRSGGLDDQATGGFSIVDLLDGILQPDDDGNGGGATPASSMAIVSLPEITVGDEKGEAKDCPVCLQGFEEGDKLRRMPCADSHCFHEQCIFSWLVINRHCPLCRFPLPAETEEEEEVAQAENDDDDDDGEETILCLHRLFANAAD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0139100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04460 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0142800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002640 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002860 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002880 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002670 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002910 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0037000 | SBH | 0.042774 | 0 | 0.256267 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002890 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0035300 | RBH | 0.0159125 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002670 | RBH | 0.045569 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002910 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002850 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002830 | RBH | 0.0 | 0.749972 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002730 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002970 | RBH | 0.0 | 0.0 | 0.0 |
