Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_11g0002870 OGI:11006690 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr11:2020994-2028587
Gene Symbol -
DNA seq

atggccagtgatcagtccatcgtcatgtccgagcaacagcgagctgtgttttgcttgacattgatggccgtcacgtacggccactgccggcagccagccgacgccgaactgctgcataggctgcaacgtgctgatcagccgccgcccatccgcggcgctagggtggtcgaaaacaccgagcctaatgtcctgttcgcgtatactccacacaatggtttattggtttgtcaccggagttcaacgacgacgacggcgttgctgattattttgcagccgatgatgacgaagcttacagcaacggtggcttcggcgcggtgccggcgttgagcgaggccatcgttagcctgccggagatggccgtcggctgcggctgcggcggcggcggcgaggcgagggagaaggagtgcggggtgtgtctagaggggttcgaggagggtgaaaagctcaggaagatgccatgcgagcactacttccatgagagctgcgttttcaaatggcttcaggtcagccgtctttgtccctactgtcgcttcgccatgcctgcggctgaggaggaggaacataacaatgatgaagaAGaagacgaagcaatgatatgcatccgtttcttgttccctgagtagattagtttaatgttcggtattcagcaaggaagcacTtttttcccgctttgttatgtttaacgatgaaactagaagaaagtgtagttgctcatacactggggttatgatatcttttgattatatagagagtattcaccgtgcatctttcatgaaggcaacttcttaagttaaattatcggaattttttaaacaaaattataatattaatcgctcgtgagaccaacttcgttgtagtttaagccattcttcagattggagttaaaaatttcttgtcaagtggaagaatttcagcgccgagaccttctgaatcgaaggccaacatttcgagttgaaacttatattgttctgaatcgaaggccaacatttcgagttgaaacttatattgttttgagttaatgggaaaacgttgcatgtagaggtggccactgcagatagcggcagggtcgacacaggcacgcagcaccggaacataagaaacgaattcgaggcagaatcccaatcagatcgaagaaacaatagtgatgtcccagttaatcgagagtgattcggattccgatctgcctcttacaaaaagaaacgattctagcagcttaatcagcaatagctcaatactctgttggttttgccccatagccaccgtacgtctccgatctacgttcgcggccaatccagtcacatatccacttcaaaactcaaagcaacaatggccgatgaacagatcagagacctgaacttgtcggagacccatacgttgctgctcatcaacctttatttgtcacacgtacaggggccgagctacgttccacacggtgttgaatcagcatacatccacatcaatcgtgatatcgaagaagatgacgacacgtacagtgatgacgggttctgcgccgtcccggcctccagcgacgccatcgctgcgctgccagtgccagagacgacggtgagtgagaccgagacgagggaggaggaagcatgtgcagtttgcctagagggatttaaggagggtgacagagtcaagaagatgccttgctctcatgacttccacgcgaattgcatctctgaatggcttagggtgagccgcctctgtccacactgccgttttgctctgcctgctgagagggattctgaacagaaaaacccagaagaagcgtgagatagagcatatatggatttatggttattggagtttggctgcacattgtaatgtcaaaaacatAAttggtattaggagtttacaacgaattagaaattaatttgatgcacatctttttttgtccatgcaactatgcaaggttaTttttattttgagtaaatttaggcagtacagtggcaataaaggaacacggagactataaagtgcacctcatgtgcttcctcggtgagatgggccgtgccggcctgtcacgaacaggccgactgtgcttGggGCCTGCGTCCCCCACCCATGCGTGCGTGCACCAGGAAAAAGTACACTGAAGGTCCCTCAACTTATCATCGAGTTACAAAATCATCCTCCAACCGCAAAACCGGATACAACGCATCCCCCAACTTACAAAACCAGTGCAAACCAGGTCCCTTAGCGGTTTTGACCCCAGTTTTGTCTGACGTGGCGGCTGAGTCATCGTGGGACCCACATGGGCCCCACATGTCAGGATGCCACATCAGCTGACCGGCATCTCCCCTTCCTCTCCTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCTCTCTCTCTCTCACTCCTCTCTGGACTCGTCCGACGGCCGGCCGGCGACGCGGCAATGGAGGCACGGGAGAAAGGGAGGGCGGCGGCAGGGCGAGGCGGTGTCCGTGGATGCGGCGGCGGCGGCTACGACACGGGGCGAGGAAGTCCGACGGTCGACCGGCGACACGGCGGCGGAGACACAGGTGAAAGGGGAGGGCGCCTAGCTGCGGCCATGGCGCCGCCGCTCACCCGCCGACACCGTGTCGCCGGCCGGCCGTCGGACCTCCTCGCCCCGCGTCGCAGCCGAAGCCGCCTCGCCCTACCGCCGCCTTCCCTTTTCACCTGTGTCTCCGCCGCCGCGTCGCCGGCCGACCGTCGGACTTCCTCGCCCCGTGTCGTAGCCGCCGCCGCCTCTCCGCCGCCGCATCCGCGGACACCGCCTCGCCCTGTCGCCGCCCTTCCTTTCTCCCATGCCTCCATCGCCGTGTCGCCGGCCAGCCGTCGGACCTCCTTGCGCCGGCGACCTCCTCCCCACCGCCGGCCGGCCTTGCACAGAGTCCAGAGAGGAGTGAGAGAGAGAGAGAGAGAGGAGGAAAGGAGAGGAAGGGGAGAGGCCGGTCTGCTGATGTGGCATCCTGACATGTGGGGCCCACGTGGGTCCCACGATGACTCAGCCGCCACGTCAGACAAAACCGGgggtcaaaaccgctaagggatctggtttgcactagttttgtaagttgggggatgcgttgaatccggttttgcggttggaggacgattttgtaactcgatgataagttgagggaccttcggtgtactttttccgcgtgccccacgaccgagttcgaacttgattccgtctccgaacacgatcagcatatctccctgcaaagctcttcaataaatctctctctctctctctctctctctctctctctctctctttgtttattttgaaaaaagatattccaacaataaatcttgcagtctaggtggtatcactgtatatcaatctgttcgttctgccggaatatggcgggtgaagaaccatggtcaagcgaggcctccgacgatgtccccgacacatcgcacatgtcggacgaacaatttcaacagttcatcgaccagtactGggcagagcaaggattcaacatttggagttggattcgtgcttccaggacgtcgtcaagctccacgccggggccaaccaggcggacggcggcgtcatggcaggccgtcactttcgacggggacggcgtcgcgcgcttctccggcaactccgaccgtagcggcggactcgacgaccaagccaccagcggcttcagcatcgtggacctactggacggtatcctacaagcggatgacgacggcaatggcggtggagctacgccggcgtcgagcatggcgatcgtaaacctgccggagattaccgtcggcgacgagaaaggcgaggcgaaggactgcccggtgtgccttcagggcttcgaggagggcgacaagcttaggaagatgccgtgcgctgattcgcactgcttccatgagcagtgcatattcagctggcttctgattaaccgccattgcccgctctgccgcttcccgttgcctgctgagacggaggaggatgaagaggtggtccaggcagagaacgacgacgacgacgatgatgaagagaccatcctatgtctgcatcgactgttcgctgatgcggctgatgagtatacgagttgatcagcattgagagatgcaatttcagtttttgatgtaaatatggatctgaatggctggaattgttcattacacaattatgccatgtgaaaagagaatatcacgattaattaagagaatttttgagattgctaatgcgcgcgcacgcgcgagatcagcaagtcacgagcgtttcggcgtttgacatggtcctgctgggcctcgtgacttcggaatcgctaattcgcgcgcctcctcccacgccttttttacgtttttttaccgatttttttcattttttcccacttttttctgatttttttaatcttttagcatgttttgagtttgaaagtttttaaattttgagtagaaaatttttaaatctgaacttgaaagtttttaaatcttgagttgaaagttttcaaatctcgatttgaaagttttcaaaattttcaaatatggacttgaaagttttcgactctcaagttaaaagttttcaaatctcgagttgaaaattttcaaatctcaaattgaaagttttcaaatctcaaattgaaagttttcaaaatttttaaatctggacttgaaaattttcgaatcttgattctcgagttgaaagtttttaaatctcgagttgaaagttttcaaaatttaactttaaaatttaaaacttaaatcaaaagttttcaaatctaacttaaatttttttcaatctgttagtaaaaaaatcttccAaaaaattctccagaatctttcctaattactatcattagtgttaagtatattactaatagaggtagttaaggcttaagaGggggggagtgctcgctagcgacgcgcacgcgctagctaggagccccctcgtgacttatcaacgcgattcagtcatgtatgtatatatgctccctattaacacattcaattagtatcttctggttgtaattggacaactgacgtatatacatgcatgcagtgattagaacatttaactaaactttttgacataagatttaattttaaaattgaaaattttgaaaactttcaactcaaattatgaaaactttccactcggcattttaaaactttctattcaaatttgaaagttttcaactcacaatcttaagaatttttcatctccaaattcaaaaaatttcaactaaaaattcgaaactttcaaatcaagttacaaactttcaagtcaaatttgaaaaactttcaactcaatttttgaaactttcgactcaaatttgaaaactttcaacttcaatttcgaaaactttcaactcaacttgaaaacttctatgtcaaatttcaaaaagttcgaatcaaaatttaaaactttcaactcaaattttaaaatcttttgactgcaaatttaaaactttcaattacttttcAaaaaaaattggtaactgaattatttatgttactgttttaaaaataatgctaatgacggtaattaacactaatcaccgtaattaccggcgtcagctcgtggactactagtgagggggcgcgcgcggctgtgcgagttaagaagctggcgcgcacgcgccccctaggaagccctgagaaatttacagtataatatactacctatatatacttgcagtattaataaaaggggttaagtccattttaccctccaactcttcgttttgtctaaaatacacccaaaactataaaactggatatttcacaccctccaactttcaataccgttcactttacaccctcaagtggtttttcaactggttttcaccaacgtggcattgatgtggaagtccattcagcaaataaaaatttggaccacatctcagtccatagccacggagccacttcttcttcttccctcatctcctcttccctttttctctctatccttcttcctcccagagcacgagagcagcggcggtggcattcttgagcttgtggagtaggagatcggtggcggtagagtaggggactcgttgcggcgacgaggctcaagcacatccccagccttcccttctgcgctgactgccggcgagacccaggacaaggtccgcctctcctgtcgtaaccgagctcgccggtggagctagagctgctcggggacgtagagttcgacggtggcaacggggcttggggatgaggaactgaagcttgacgagacggcggcggctggcggatgcggatatgagcttgagcttgtcctctaccaagcgttggcggcgctccatagggaggactcccccccctcgtgtgtagctccggtgaggtccgcctcttgcgcgcggggcagcaagctccaccgtcgtcgccactctccttgccggtgaccacctctgcaaccctggcagccccaccgtcctcgcagcagctccacaccaccgccgccaacggtcgtgaggaagagaagcacgaacagggcagggagagatagagaatatgggcttggcccatattacctcgtgggctgacgtagcgagggttgacgtggcatctgacgtgtcaaaaaccacggtAaaaacagttcgggggttaagtgttcggtattgaaagtttagggtgtattatatctggttttgtaattcgggggtgtattttggacaagcataagagttcgagggtgtaaaatggacttttccctataaaagggtatattagcaatatatcagctttataatgtaaagatgaacttgaaatgaagtgcaatttattactcgtacaaatctcacatgttccccacttcctgtacaggatatgcactttcacctgggcaccctttttaagtgaagatacaagcacagccaacaggcacgtcaacagcatccgcaaaggctccgacagctgatgagcagtgactcactggcagcgaaggcagcaggcggactccaactcggaaccagcattaccatccttgattactgatttcaattccgattcgaactagctcgaacacagcggcgtagtcgcgtgcgtggtatgcgagccctagctataaatctgcacgcacatgcggtacataccgatatacgcgtccctgcacatcaatcttcaaattctcgatcggctagctgctcattggtgccgagcgtcgcgcgcattcttgtcctagtcgccggagcatggcgaccacaggacgattgctgctgccccacgacatgtacaggaggctgcaggctcccacggcagcggccgcggccgcggccgcgctctttattttggcgccccaccttccagaggcctaacgctgccgctgccgtaccggaaggatacagcaacggtcgcttcggctccgtcccggcgtgcagcgaggccatcgccgccttggaggagacgtcgcccggcgaggcgaaggagaaggactgctccgtgtgcctggaggccttcgaggaggagagcgacaagctgatgaggaagatgccgtgctgccatgccttccatgagagctgcatcttcgagtggctgcaggtcagccgcctctgcccgctctgccgcttcgcgctgcccacccaggcggaggcggaggcgggactgtggccattgctcacgcctggttctggttcggggacatga

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CDS seq

atggccagtgatcagtccatcgtcatgtccgagcaacagcgagctgtgttttgcttgacattgatggccgtcacgtacggccactgccggcagccagccgacgccgaactgctgcataggctgcaacgtgctgatcagccgccgcccatccgcggcgctagggtggtcgaaaacaccgagcctaatgtcctgttcgcgtatactccacacaatgccgatgatgacgaagcttacagcaacggtggcttcggcgcggtgccggcgttgagcgaggccatcgttagcctgccggagatggccgtcggctgcggctgcggcggcggcggcgaggcgagggagaaggagtgcggggtgtgtctagaggggttcgaggagggtgaaaagctcaggaagatgccatgcgagcactacttccatgagagctgcgttttcaaatggcttcaggggccgagctacgttccacacggtgttgaatcagcatacatccacatcaatcgtgatatcgaagaagatgacgacacgtacagtgatgacgggttctgcgccgtcccggcctccagcgacgccatcgctgcgctgccagtgccagagacgacggtgagtgagaccgagacgagggaggaggaagcatgtgcagtttgcctagagggatttaaggagggtgacagagtcaagaagatgccttgctctcatgacttccacgcgaattgcatctctgaatggcttagggtgagccgcctctgtccacactgccgttttgctctgcctgctgagagggattctgaacagaaaaacccagaagaagccgaggcctccgacgatgtccccgacacatcgcacatgtcggacgaacaatttcaacagttcatcgaccagtactGggcagagcaaggattcaacatttggagttggattcgtgcttccaggacgtcgtcaagctccacgccggggccaaccaggcggacggcggcgtcatggcaggccgtcactttcgacggggacggcgtcgcgcgcttctccggcaactccgaccgtagcggcggactcgacgaccaagccaccagcggcttcagcatcgtggacctactggacggtatcctacaagcggatgacgacggcaatggcggtggagctacgccggcgtcgagcatggcgatcgtaaacctgccggagattaccgtcggcgacgagaaaggcgaggcgaaggactgcccggtgtgccttcagggcttcgaggagggcgacaagcttaggaagatgccgtgcgctgattcgcactgcttccatgagcagtgcatattcagctggcttctgattaaccgccattgcccgctctgccgcttcccgttgcctgctgagacggaggaggatgaagaggtggtccaggcagagaacgacgacgacgacgatgatgaagagaccatcctatgtctgcatcgactgttcgctgatgcggctgatgagcctaacgctgccgctgccgtaccggaaggatacagcaacggtcgcttcggctccgtcccggcgtgcagcgaggccatcgccgccttggaggagacgtcgcccggcgaggcgaaggagaaggactgctccgtgtgcctggaggccttcgaggaggagagcgacaagctgatgaggaagatgccgtgctgccatgccttccatgagagctgcatcttcgagtggctgcaggtcagccgcctctgcccgctctgccgcttcgcgctgcccacccaggcggaggcggaggcgggactgtggccattgctcacgcctggttctggttcggggacatga

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Protein seq

MASDQSIVMSEQQRAVFCLTLMAVTYGHCRQPADAELLHRLQRADQPPPIRGARVVENTEPNVLFAYTPHNADDDEAYSNGGFGAVPALSEAIVSLPEMAVGCGCGGGGEAREKECGVCLEGFEEGEKLRKMPCEHYFHESCVFKWLQGPSYVPHGVESAYIHINRDIEEDDDTYSDDGFCAVPASSDAIAALPVPETTVSETETREEEACAVCLEGFKEGDRVKKMPCSHDFHANCISEWLRVSRLCPHCRFALPAERDSEQKNPEEAEASDDVPDTSHMSDEQFQQFIDQYWAEQGFNIWSWIRASRTSSSSTPGPTRRTAASWQAVTFDGDGVARFSGNSDRSGGLDDQATSGFSIVDLLDGILQADDDGNGGGATPASSMAIVNLPEITVGDEKGEAKDCPVCLQGFEEGDKLRKMPCADSHCFHEQCIFSWLLINRHCPLCRFPLPAETEEDEEVVQAENDDDDDDEETILCLHRLFADAADEPNAAAAVPEGYSNGRFGSVPACSEAIAALEETSPGEAKEKDCSVCLEAFEEESDKLMRKMPCCHAFHESCIFEWLQVSRLCPLCRFALPTQAEAEAGLWPLLTPGSGSGT

Function E3 ubiquitin-protein ligase RNF181 [UniProtKB/Swiss-Prot:Q6GPV5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_11g0002870 OsKeNa_11g0002870.01 Chr11 2020994 2028587 + NAM
CDS seq

atggccagtgatcagtccatcgtcatgtccgagcaacagcgagctgtgttttgcttgacattgatggccgtcacgtacggccactgccggcagccagccgacgccgaactgctgcataggctgcaacgtgctgatcagccgccgcccatccgcggcgctagggtggtcgaaaacaccgagcctaatgtcctgttcgcgtatactccacacaatgccgatgatgacgaagcttacagcaacggtggcttcggcgcggtgccggcgttgagcgaggccatcgttagcctgccggagatggccgtcggctgcggctgcggcggcggcggcgaggcgagggagaaggagtgcggggtgtgtctagaggggttcgaggagggtgaaaagctcaggaagatgccatgcgagcactacttccatgagagctgcgttttcaaatggcttcaggggccgagctacgttccacacggtgttgaatcagcatacatccacatcaatcgtgatatcgaagaagatgacgacacgtacagtgatgacgggttctgcgccgtcccggcctccagcgacgccatcgctgcgctgccagtgccagagacgacggtgagtgagaccgagacgagggaggaggaagcatgtgcagtttgcctagagggatttaaggagggtgacagagtcaagaagatgccttgctctcatgacttccacgcgaattgcatctctgaatggcttagggtgagccgcctctgtccacactgccgttttgctctgcctgctgagagggattctgaacagaaaaacccagaagaagccgaggcctccgacgatgtccccgacacatcgcacatgtcggacgaacaatttcaacagttcatcgaccagtactGggcagagcaaggattcaacatttggagttggattcgtgcttccaggacgtcgtcaagctccacgccggggccaaccaggcggacggcggcgtcatggcaggccgtcactttcgacggggacggcgtcgcgcgcttctccggcaactccgaccgtagcggcggactcgacgaccaagccaccagcggcttcagcatcgtggacctactggacggtatcctacaagcggatgacgacggcaatggcggtggagctacgccggcgtcgagcatggcgatcgtaaacctgccggagattaccgtcggcgacgagaaaggcgaggcgaaggactgcccggtgtgccttcagggcttcgaggagggcgacaagcttaggaagatgccgtgcgctgattcgcactgcttccatgagcagtgcatattcagctggcttctgattaaccgccattgcccgctctgccgcttcccgttgcctgctgagacggaggaggatgaagaggtggtccaggcagagaacgacgacgacgacgatgatgaagagaccatcctatgtctgcatcgactgttcgctgatgcggctgatgagcctaacgctgccgctgccgtaccggaaggatacagcaacggtcgcttcggctccgtcccggcgtgcagcgaggccatcgccgccttggaggagacgtcgcccggcgaggcgaaggagaaggactgctccgtgtgcctggaggccttcgaggaggagagcgacaagctgatgaggaagatgccgtgctgccatgccttccatgagagctgcatcttcgagtggctgcaggtcagccgcctctgcccgctctgccgcttcgcgctgcccacccaggcggaggcggaggcgggactgtggccattgctcacgcctggttctggttcggggacatga

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Protein seq

MASDQSIVMSEQQRAVFCLTLMAVTYGHCRQPADAELLHRLQRADQPPPIRGARVVENTEPNVLFAYTPHNADDDEAYSNGGFGAVPALSEAIVSLPEMAVGCGCGGGGEAREKECGVCLEGFEEGEKLRKMPCEHYFHESCVFKWLQGPSYVPHGVESAYIHINRDIEEDDDTYSDDGFCAVPASSDAIAALPVPETTVSETETREEEACAVCLEGFKEGDRVKKMPCSHDFHANCISEWLRVSRLCPHCRFALPAERDSEQKNPEEAEASDDVPDTSHMSDEQFQQFIDQYWAEQGFNIWSWIRASRTSSSSTPGPTRRTAASWQAVTFDGDGVARFSGNSDRSGGLDDQATSGFSIVDLLDGILQADDDGNGGGATPASSMAIVNLPEITVGDEKGEAKDCPVCLQGFEEGDKLRKMPCADSHCFHEQCIFSWLLINRHCPLCRFPLPAETEEDEEVVQAENDDDDDDEETILCLHRLFADAADEPNAAAAVPEGYSNGRFGSVPACSEAIAALEETSPGEAKEKDCSVCLEAFEEESDKLMRKMPCCHAFHESCIFEWLQVSRLCPLCRFALPTQAEAEAGLWPLLTPGSGSGT

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0142800 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g04690 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os11g0142800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0002810 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_12g0003170 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0002830 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0002800 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0002830 RBH 0.0 0.000000 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0037600 RBH 0.029483 0.0108645 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0002870 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0035900 RBH 0.149387 0.2336135 0.0063185
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0002760 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0002910 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0002890 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0002800 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0002880 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G002820 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0002810 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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