Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g18540 | OGI:09034200 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:11363792-11367121 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATTTTAAAGATGAGGGTGTAGTAACATGTGTACCATCGTCTGGAGAGGTGATGGTATCATCATGTGGGATACTGTAGTAGATCTCGATGGCGTTGAGCAATGGTGGCAGCACGGAGTCGTTGGTGGCGACGAGCGAGACGTTGGACAACATGTAAAGACCGCTTGAGCTGTAACTTGGCTGCATGCTGTACAACTCGTAGACCGATATGTTGTTCTGTTTTTTCCACTTGACCTTGCCGGAGTATATTTCGAACTGACGCTGCTGCTGCTCGAAGCTGGCGAAGTGCAGGAAGTGGAAGTACGCCCGCTCGGTTGGAGGCGGCAACTGACCGACAGAAGCTGCATGAACAGTGATGTTCAGATGTACAGAAGTGGCAGACGTCGTGATCGCGGTCCGGAGGACGTCTCTCGGAACCCGGATGTGGTCATCGGAGTAGTAACCCATGAAAGTGCCGTTTGTAGAGATGTTGAGCCACTCCGTGCTGTACACTGGTGTCCACCAGAAGCGGTCAAACACATCGTTTGGGTACCTGAGAAATATTTAATTTGTCAGTACACTGCCAGAATCTTGTGTGTTCTTTGTCTTTTTTTTTCTTTACTTGTTTTTTTTAGAAAATACTACTCCCTCCGTCTGAGGATATAAGTATAGATGGCCAGAAAGCCCGAAGCCCGACGGCCCGGTCCATGGCACGGCGTTTTGGCCCGGGCCAAGCACCGGGCCGTGCCTGGGCCTCTCCCTCGGCACGTTGGGCTGGCCCAACACGGCACGATGGGCCGCAGGACAGGCCCGACACATAAACACTAGGGAGTAAAAATAGACATATTATATGCCACGGTCGAAAGAATAGGGACGTAAGACTTATTTTGGCTATATATATGTCAGCCCAAAGAGGAGGGATGGAAAATAGACTTATTTTCACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTCACAACCCAAAGTGGAGGGACGAAAAATAGACTTATTTTCGCTATATATATATATATATATATATATATATATATATATATATATATATATATGTCACAGCCCAAAGAGGAGGGACGGAAAATAGACTTATTTAAAAAAGGCACAATGGGCCACCCGCGCCTTCGGGCCGGCCCGGCATGGCCCGACGGCTGGTGGGCCATGCCTGGGCGGGAGGCACAGCCCGTGGGCCGGCACGGCCTGCACGAAGTGCCGATCGGGCCATGCCAGGCGTGCCTTCTGGCCATCTATAGATATAAGACGTTTTGACCGAACTTCTTTAAGTTTGACCAAATTTATAGAAAACAGTAGTAATTTTTTTAACTCAAGAAAACTTTATTATGAAAATATATTTAATTATTGATTTGATGACACTAATTTATTATTATAAATATTACTATATTTGTCTATAAAACTTAGTTAAATTTGAAACAATTTGACTTTCATCAAAGTCAAAATGTCTTATAACATGAAACGAAGGGAATAAGTAATTTCAAAAACAAATCCCCTAATAACATATTTGTAGAATATACGTGGAAGAAATTTATGCCCTTCCATCCACACTACCTGATCCACTAAAAACAGCTGATGGACTAGATACTTGCATCCTGTTTGAGCCTCAAACTACGCTTCCAATAAGGTCAGATTGTTCTCAAAAAAAATAAGGTCAGATTATTGAGGACGATGATTGACAAAGATCGAGTTCGCCCACTCGCTCAACCAGGACTCTAACTGATAGGAGTATCTACCAAGAATAAGTCCACGAGTCTGATCCTAGAAAACGAGGGGACATAGGGGTATATAAATACCTTGTCTCCAGAGTCCGGAGGCGGGATGGGGAAGGAACCTAACAGAACAACGGAACAACATCCAACTATGCCCCACCGAGATCTAAGCCTTCAGCCTACTGAGGCCATTCCCAACCCAATAACTAGAATGGTGTCCATAACATTAAATAAGCTGCCACATATGATAAAAAATGATATGGCAAATGAATAAATGAGAAAAAAGATCGTGTGAGATCTTGCATGAGACATGGTTTTTACATAATATCCAAGACATCGTGTGAGATAAGTAGCATTAAATTTAAGTATGGATTAGTTGTGTTTGCATCGAAAGAGTAGTATCTAGTTCTAGTTTCTTGATGATGTAGAGCATATAGAAACTGTCTAGTATCCTGGGTTGGGAATGGCCTGAGAAGCTTTGCAATCCAGCTTCCACACATGCAACCACCATTTTATCGGGACTCTCGACGAGAGTAGTAGATAGGCTTGAGATAGACACACACACTTCCTTTATACAGTGGCGAAAGCCAGGATTTTTTTTCGCCGGGAAGGCCGAAGTAGGCTATCCGAATGTATTGAAGAAGAAAAAAGTTACAACAAAAACATGACAATGCACCAAAGTGCACGTCCAAGCACCACACCTTAACCACACAAACACAAACAATTGAGAGTGGAACCTAGCTAGCACCAAAACAACCTTCGCTAAGTGTGGTCGATCGCCGCCAGGCCTACGATAATACCACAATGATGAGACTCCGAAAGCGATGCCCCCACGAGGGTCACGACATCAAGGACACCGCCATCGCCTATCTAAGAAAGATGTGGTTTTCACCCAGAGAAACTCGCCAAGGAAAGGAAGAGGGTACCCTCAACAACGCCCCAAGGGGTTACGATGCCCAATGACGTAGCCGCTGCTGGCCCGATGAACCACTGAGCTAGGCTTACGCCTGGAATCCCCATAACCTTCGCTTGTAGTTCGCCGCCTACCAGCTCAGAAACCACCGCACAGGCAATGGCAGCATGTGGCCTCCACCACACCGTATCGGCACCCCTCCGTCGGCCGACTACTAGACTTGCTGCTGCATCCTACCGCCATCCCTGAGAGCTAACCTAGGCCCCCTCCATCCCACCACCTCCACCTGCCGGCCTTCTTGCTAGATTTGGCAGAAGAAGAACCCGGGACTGGATGGCATCGCTTCCCCCGTTGACGAGCTGCCGCCTTAACCCAATCTAGAAACTCCCCACGAAGAAGGGGAGGAGCCCTAGGAAGGGAGGGGATGTTGACTGGTAACAAGGAAGACGACCTTCCACCGCCAGGTCCTTTTCCACAGCCTTTGCTTCCAGCCGCGCTGCCTCTGCGCCTGCCAGTCGCATCGGCACTGGCGCCACCACCGCCGTCCAGGCGACCGGCTGCCTCCGCGCTGCGCCACGCCAGTCCCGGGCCACCACGCCGCCACCGGCCGCCTCTGCGCCGTGCCGCACATTCGGGCCTCCTTCGCCGCAAGACCGGTCGAGCCAT
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| CDS seq | ATGGCTCGACCGGTCTTGCGGCGAAGGAGGCCCGAATGTGCGGCACGGCGCAGAGGCGGCCGGTGGCGGCGTGGTGGCCCGGGACTGGCGTGGCGCAGCGCGGAGGCAGCCGGTCGCCTGGACGGCGGTGGTGGCGCCAGTGCCGATGCGACTGGCAGGCGCAGAGGCAGCGCGGCTGGAAGCAAAGGCTGTGGAAAAGGACCTGGCGGTGGAAGGTCGTCTTCCTTGTTACCAGTCAACATCCCCTCCCTTCCTAGGGCTCCTCCCCTTCTTCGTGGGGAGTTTCTAGATTGGGTTAAGGCGGCAGCTCGTCAACGGGGGAAGCGATGCCATCCAGTCCCGGGTTCTTCTTCTGCCAAATCTAGCAAGAAGGCCGGCAGCTTATTTAATGTTATGGACACCATTCTAGTTATTGGGTTGGGAATGGCCTCAGTTCCTTCCCCATCCCGCCTCCGGACTCTGGAGACAAGGTACCCAAACGATGTGTTTGACCGCTTCTGGTGGACACCAGTGTACAGCACGGAGTGGCTCAACATCTCTACAAACGGCACTTTCATGGGTTACTACTCCGATGACCACATCCGGGTTCCGAGAGACGTCCTCCGGACCGCGATCACGACGTCTGCCACTTCTGTACATCTGAACATCACTGTTCATGCAGCTTCTGTCGGTCAGTTGCCGCCTCCAACCGAGCGGGCGTACTTCCACTTCCTGCACTTCGCCAGCTTCGAGCAGCAGCAGCGTCAGTTCGAAATATACTCCGGCAAGGTCAAGTGGAAAAAACAGAACAACATATCGGTCTACGAGTTGTACAGCATGCAGCCAAGTTACAGCTCAAGCGGTCTTTACATGTTGTCCAACGTCTCGCTCGTCGCCACCAACGACTCCGTGCTGCCACCATTGCTCAACGCCATCGAGATCTACTACAGTATCCCACATGATGATACCATCACCTCTCCAGACGATGGTACACATGTTACTACACCCTCATCTTTAAAATAA
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| Protein seq | MARPVLRRRRPECAARRRGGRWRRGGPGLAWRSAEAAGRLDGGGGASADATGRRRGSAAGSKGCGKGPGGGRSSSLLPVNIPSLPRAPPLLRGEFLDWVKAAARQRGKRCHPVPGSSSAKSSKKAGSLFNVMDTILVIGLGMASVPSPSRLRTLETRYPNDVFDRFWWTPVYSTEWLNISTNGTFMGYYSDDHIRVPRDVLRTAITTSATSVHLNITVHAASVGQLPPPTERAYFHFLHFASFEQQQRQFEIYSGKVKWKKQNNISVYELYSMQPSYSSSGLYMLSNVSLVATNDSVLPPLLNAIEIYYSIPHDDTITSPDDGTHVTTPSSLK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g18540 | LOC_Os09g18540.1 | Chr09 | 11363792 | 11367121 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTCGACCGGTCTTGCGGCGAAGGAGGCCCGAATGTGCGGCACGGCGCAGAGGCGGCCGGTGGCGGCGTGGTGGCCCGGGACTGGCGTGGCGCAGCGCGGAGGCAGCCGGTCGCCTGGACGGCGGTGGTGGCGCCAGTGCCGATGCGACTGGCAGGCGCAGAGGCAGCGCGGCTGGAAGCAAAGGCTGTGGAAAAGGACCTGGCGGTGGAAGGTCGTCTTCCTTGTTACCAGTCAACATCCCCTCCCTTCCTAGGGCTCCTCCCCTTCTTCGTGGGGAGTTTCTAGATTGGGTTAAGGCGGCAGCTCGTCAACGGGGGAAGCGATGCCATCCAGTCCCGGGTTCTTCTTCTGCCAAATCTAGCAAGAAGGCCGGCAGCTTATTTAATGTTATGGACACCATTCTAGTTATTGGGTTGGGAATGGCCTCAGTTCCTTCCCCATCCCGCCTCCGGACTCTGGAGACAAGGTACCCAAACGATGTGTTTGACCGCTTCTGGTGGACACCAGTGTACAGCACGGAGTGGCTCAACATCTCTACAAACGGCACTTTCATGGGTTACTACTCCGATGACCACATCCGGGTTCCGAGAGACGTCCTCCGGACCGCGATCACGACGTCTGCCACTTCTGTACATCTGAACATCACTGTTCATGCAGCTTCTGTCGGTCAGTTGCCGCCTCCAACCGAGCGGGCGTACTTCCACTTCCTGCACTTCGCCAGCTTCGAGCAGCAGCAGCGTCAGTTCGAAATATACTCCGGCAAGGTCAAGTGGAAAAAACAGAACAACATATCGGTCTACGAGTTGTACAGCATGCAGCCAAGTTACAGCTCAAGCGGTCTTTACATGTTGTCCAACGTCTCGCTCGTCGCCACCAACGACTCCGTGCTGCCACCATTGCTCAACGCCATCGAGATCTACTACAGTATCCCACATGATGATACCATCACCTCTCCAGACGATGGTACACATGTTACTACACCCTCATCTTTAAAATAA
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| Protein seq | MARPVLRRRRPECAARRRGGRWRRGGPGLAWRSAEAAGRLDGGGGASADATGRRRGSAAGSKGCGKGPGGGRSSSLLPVNIPSLPRAPPLLRGEFLDWVKAAARQRGKRCHPVPGSSSAKSSKKAGSLFNVMDTILVIGLGMASVPSPSRLRTLETRYPNDVFDRFWWTPVYSTEWLNISTNGTFMGYYSDDHIRVPRDVLRTAITTSATSVHLNITVHAASVGQLPPPTERAYFHFLHFASFEQQQRQFEIYSGKVKWKKQNNISVYELYSMQPSYSSSGLYMLSNVSLVATNDSVLPPLLNAIEIYYSIPHDDTITSPDDGTHVTTPSSLK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0349600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g19136 | RBH | 0.0 | 0.086435 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0349600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007040 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007040 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007230 | SBH | 0.000000 | 0.0 | 0.582392 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007160 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007240 | RBH | 4.377649 | 0.000000 | 6.404025 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0198700 | RBH | 0 | 0.5887 | 1.266588 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0007260 | SBH | 0.036965 | 0.049152 | 0.421858 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0176200 | SBH | 0.623677 | 1.0631815 | 2.3892725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007180 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007010 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0006950 | SBH | 0.563082 | 0.981259 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0006940 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0006960 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007550 | RBH | 0.019716 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0007350 | RBH | 0.000000 | 0.000000 | 0.000000 |
