Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0007180 | OGI:09034200 | 8/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:11902715-11903325 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcagtacttctacgcgacggaccacatcgtggctccggcacccgtcctgcagaccgctatcaccacgtcttccacttctgtacatctggacatccctcaattagtatattacgccggtcgcttgccggcttcAaccgagatgccatacatacaattcctgcacttcgccaacttggagcagcagggacggaagttcgacatatattccggcaatactaagtggtattcaacggtctatctatacccaatccaagacggaatcactgtacccttgtactgctatagaagtagctccaccatcacatccaacacctcactagtggccaccaacgactccgtgctgccacccttgctcaatgccatcgagatatactacaagatcgcatatagcgataacacaacctctccagacgatggtacatatactaattcagaaaccgtagcattgccaacattaaTtttttgtatttatttttattTAtatatatgatggtgcaatttactttCcctattcaattcatgcatgccacattagtcgatttattccccaaaatatattcaatggtatgaggcttaTttttttatttttttcttatatcagaaaattag
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| CDS seq | atgcagtacttctacgcgacggaccacatcgtggctccggcacccgtcctgcagaccgctatcaccacgtcttccacttctgtacatctggacatccctcaattagtatattacgccggtcgcttgccggcttcAaccgagatgccatacatacaattcctgcacttcgccaacttggagcagcagggacggaagttcgacatatattccggcaatactaagtggtattcaacggtctatctatacccaatccaagacggaatcactgtacccttgtactgctatagaagtagctccaccatcacatccaacacctcactagtggccaccaacgactccgtgctgccacccttgctcaatgccatcgagatatactacaagatcgcatatagcgataacacaacctctccagacgatgaaaattag
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| Protein seq | MQYFYATDHIVAPAPVLQTAITTSSTSVHLDIPQLVYYAGRLPASTEMPYIQFLHFANLEQQGRKFDIYSGNTKWYSTVYLYPIQDGITVPLYCYRSSSTITSNTSLVATNDSVLPPLLNAIEIYYKIAYSDNTTSPDDEN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0007180 | OsLima_09g0007180.01 | Chr09 | 11902715 | 11903325 | + | NAM | ||
| CDS seq | atgcagtacttctacgcgacggaccacatcgtggctccggcacccgtcctgcagaccgctatcaccacgtcttccacttctgtacatctggacatccctcaattagtatattacgccggtcgcttgccggcttcAaccgagatgccatacatacaattcctgcacttcgccaacttggagcagcagggacggaagttcgacatatattccggcaatactaagtggtattcaacggtctatctatacccaatccaagacggaatcactgtacccttgtactgctatagaagtagctccaccatcacatccaacacctcactagtggccaccaacgactccgtgctgccacccttgctcaatgccatcgagatatactacaagatcgcatatagcgataacacaacctctccagacgatgaaaattag
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| Protein seq | MQYFYATDHIVAPAPVLQTAITTSSTSVHLDIPQLVYYAGRLPASTEMPYIQFLHFANLEQQGRKFDIYSGNTKWYSTVYLYPIQDGITVPLYCYRSSSTITSNTSLVATNDSVLPPLLNAIEIYYKIAYSDNTTSPDDEN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0359500 | SBH | 0.0 | 0.0 | 0.242083 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g18540 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0359500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007060 | SBH | 0.0 | 10.680312 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007060 | SBH | 0.171008 | 6.705332 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007230 | SBH | 0.000000 | 0.0 | 0.582392 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007160 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007240 | RBH | 4.377649 | 0.000000 | 6.404025 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0198700 | RBH | 0 | 0.5887 | 1.266588 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0176200 | SBH | 0.623677 | 1.0631815 | 2.3892725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007260 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007040 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0006940 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0006960 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007550 | RBH | 0.019716 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0007350 | RBH | 0.000000 | 0.000000 | 0.000000 |
