Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g46870 | OGI:07067180 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:28020590-28021848 | ||||||||
| Gene Symbol | OsSDR110C-MI4, SDR110C-MI4, - | ||||||||||
| DNA seq | AACTACGACGACTAGTTCGATCAGGTCGATTCTGCTCTGCATTTTTTTAGCAGGATGTTCAGATCAGCAGCTCTTCTAAGGTACTACTAGTCTATATGAGTTTGATCAAGATATATATTACTATATACCAAGAATTCACTATATATTTTTTATACTATCATAGCTAATCATATATGTGTAGCTGAGTACTGAATAATGGGTATGGATGATCTGGTGTCATAATAGGGAGACGAAGAGAGTTTTTGGAACAACGAGTACTTGGACAGCTGGTTTAGTCGTCAATGGCTTCTCCACGGCGTCCAGCTCGCACCAGAGGTTGGCCGGCAAGGTGGCCGTCATCACCGGCGGCGCCAGCGGCATCGGCAAGGCGACGGCCACGGAGTTCATCAAGAACGGCGCCAAGGTCATCATCGCCGACATCCAGGACGACCTCGGCCACTCGGTGGCGGCGGAGCTCGGCCCGGACGCCGCGTACACGCGCTGCGACGTCGCCGACGAGGCGCAGGTCGCCGCGGCCGTGGGCCTCGCCGTGAAGCGGCACGGCCGCCTCGACGTGTTCCACAACAACGCCGGCATCGCCGGGGCGCTGCCGCAGGACGACATGGCGGCCGTGGACCTCGGCGACTTCGACCGGGTGATGGCGGTGAACGCCCGGTCGACGCTCGCCGCCGTCAAGCACGCCGCGCGCGCCATGGCGCCGCGATGCAGCGGCTGCGTGCTCTGCACGTCGAGCGGCGCGGGCGTCATCCCCGTCCCGGCTGTCCCGGTGTACTCCGTGTCCAAGGCCACCGTGATCGCCATCGTGCGCGCGGCGGCGGAGCCGATGGCGCGCCACGGCCTGCGTGTGAACGCCATCTCGCCGGGCGCCACGAGGACGCCGCTGCTGCTGCGGCAGATCCCGCTGCTCTCCGAGATGTCCCCTAGCCTGAGCGACGGCCTGAAGACGACGGTGGAGAAGGAGGTCGGCGAGGGTGGCGCCGTCGTGCTGCTCGCGCCGGAGGACATCGCGAGGGCGGCGGTGTACCTGGCCTCCGACGAGGCCAGGTACGTGAACGGGCACAACCTCGTCGTCGACGCCGGGTACACCGTGCACAAAGGAGCGTGACAGGTAGACGACGCCGATCGAGCAGGTGGCGTGCATGCATCGCTGCTTGGTTTTCAAAGTCGTCGTTGTTGTAATTGGAATAATAAGGACGTCCGTGACAAAATTTAAGTATTTGAAGATGATGATGCCGTTTGAAACTCATATAGATGTTGAT
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| CDS seq | ATGTTCAGATCAGCAGCTCTTCTAAGGGAGACGAAGAGAGTTTTTGGAACAACGAGTACTTGGACAGCTGGTTTAGTCGTCAATGGCTTCTCCACGGCGTCCAGCTCGCACCAGAGGTTGGCCGGCAAGGTGGCCGTCATCACCGGCGGCGCCAGCGGCATCGGCAAGGCGACGGCCACGGAGTTCATCAAGAACGGCGCCAAGGTCATCATCGCCGACATCCAGGACGACCTCGGCCACTCGGTGGCGGCGGAGCTCGGCCCGGACGCCGCGTACACGCGCTGCGACGTCGCCGACGAGGCGCAGGTCGCCGCGGCCGTGGGCCTCGCCGTGAAGCGGCACGGCCGCCTCGACGTGTTCCACAACAACGCCGGCATCGCCGGGGCGCTGCCGCAGGACGACATGGCGGCCGTGGACCTCGGCGACTTCGACCGGGTGATGGCGGTGAACGCCCGGTCGACGCTCGCCGCCGTCAAGCACGCCGCGCGCGCCATGGCGCCGCGATGCAGCGGCTGCGTGCTCTGCACGTCGAGCGGCGCGGGCGTCATCCCCGTCCCGGCTGTCCCGGTGTACTCCGTGTCCAAGGCCACCGTGATCGCCATCGTGCGCGCGGCGGCGGAGCCGATGGCGCGCCACGGCCTGCGTGTGAACGCCATCTCGCCGGGCGCCACGAGGACGCCGCTGCTGCTGCGGCAGATCCCGCTGCTCTCCGAGATGTCCCCTAGCCTGAGCGACGGCCTGAAGACGACGGTGGAGAAGGAGGTCGGCGAGGGTGGCGCCGTCGTGCTGCTCGCGCCGGAGGACATCGCGAGGGCGGCGGTGTACCTGGCCTCCGACGAGGCCAGGTACGTGAACGGGCACAACCTCGTCGTCGACGCCGGGTACACCGTGCACAAAGGAGCGTGA
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| Protein seq | MFRSAALLRETKRVFGTTSTWTAGLVVNGFSTASSSHQRLAGKVAVITGGASGIGKATATEFIKNGAKVIIADIQDDLGHSVAAELGPDAAYTRCDVADEAQVAAAVGLAVKRHGRLDVFHNNAGIAGALPQDDMAAVDLGDFDRVMAVNARSTLAAVKHAARAMAPRCSGCVLCTSSGAGVIPVPAVPVYSVSKATVIAIVRAAAEPMARHGLRVNAISPGATRTPLLLRQIPLLSEMSPSLSDGLKTTVEKEVGEGGAVVLLAPEDIARAAVYLASDEARYVNGHNLVVDAGYTVHKGA |
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| Function | Short-chain dehydrogenase reductase 3b [UniProtKB/Swiss-Prot:Q94K41] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g46870 | LOC_Os07g46870.1 | Chr07 | 28020590 | 28021848 | + | MSU_osa1r7 | ||
| CDS seq | ATGTTCAGATCAGCAGCTCTTCTAAGGGAGACGAAGAGAGTTTTTGGAACAACGAGTACTTGGACAGCTGGTTTAGTCGTCAATGGCTTCTCCACGGCGTCCAGCTCGCACCAGAGGTTGGCCGGCAAGGTGGCCGTCATCACCGGCGGCGCCAGCGGCATCGGCAAGGCGACGGCCACGGAGTTCATCAAGAACGGCGCCAAGGTCATCATCGCCGACATCCAGGACGACCTCGGCCACTCGGTGGCGGCGGAGCTCGGCCCGGACGCCGCGTACACGCGCTGCGACGTCGCCGACGAGGCGCAGGTCGCCGCGGCCGTGGGCCTCGCCGTGAAGCGGCACGGCCGCCTCGACGTGTTCCACAACAACGCCGGCATCGCCGGGGCGCTGCCGCAGGACGACATGGCGGCCGTGGACCTCGGCGACTTCGACCGGGTGATGGCGGTGAACGCCCGGTCGACGCTCGCCGCCGTCAAGCACGCCGCGCGCGCCATGGCGCCGCGATGCAGCGGCTGCGTGCTCTGCACGTCGAGCGGCGCGGGCGTCATCCCCGTCCCGGCTGTCCCGGTGTACTCCGTGTCCAAGGCCACCGTGATCGCCATCGTGCGCGCGGCGGCGGAGCCGATGGCGCGCCACGGCCTGCGTGTGAACGCCATCTCGCCGGGCGCCACGAGGACGCCGCTGCTGCTGCGGCAGATCCCGCTGCTCTCCGAGATGTCCCCTAGCCTGAGCGACGGCCTGAAGACGACGGTGGAGAAGGAGGTCGGCGAGGGTGGCGCCGTCGTGCTGCTCGCGCCGGAGGACATCGCGAGGGCGGCGGTGTACCTGGCCTCCGACGAGGCCAGGTACGTGAACGGGCACAACCTCGTCGTCGACGCCGGGTACACCGTGCACAAAGGAGCGTGA
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| Protein seq | MFRSAALLRETKRVFGTTSTWTAGLVVNGFSTASSSHQRLAGKVAVITGGASGIGKATATEFIKNGAKVIIADIQDDLGHSVAAELGPDAAYTRCDVADEAQVAAAVGLAVKRHGRLDVFHNNAGIAGALPQDDMAAVDLGDFDRVMAVNARSTLAAVKHAARAMAPRCSGCVLCTSSGAGVIPVPAVPVYSVSKATVIAIVRAAAEPMARHGLRVNAISPGATRTPLLLRQIPLLSEMSPSLSDGLKTTVEKEVGEGGAVVLLAPEDIARAAVYLASDEARYVNGHNLVVDAGYTVHKGA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.296414 | 0.000000 | 0.588076 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0664000 | RBH | 0.328759 | 0.271747 | 2.179168 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g40250 | SBH | 0.000000 | 0.232641 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0664000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0026790 | SBH | 0.0 | 0.0 | 0.658171 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026790 | SBH | 0.043597 | 0.834109 | 1.177725 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0026610 | RBH | 2.168056 | 7.725956 | 3.740138 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026390 | SBH | 0.000000 | 0.104732 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026640 | SBH | 0.0 | 0.263647 | 7.292994 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0455200 | SBH | 1.909187 | 0.9786 | 0.1270485 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027060 | SBH | 0.000000 | 0.586167 | 0.017986 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0467700 | RBH | 0.1906305 | 0.91372 | 0.1204425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026330 | RBH | 0.0 | 0.072331 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026790 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026440 | SBH | 0.0 | 1.074969 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0026910 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026420 | SBH | 0.0 | 3.255497 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026570 | SBH | 0.0 | 0.0 | 0.585537 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026300 | RBH | 0.439231 | 16.591320 | 10.141115 |
