Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0026910 | OGI:07067180 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:27886964-27912155 | ||||||||
| Gene Symbol | OsSDR110C-MI2, SDR110C-MI2, OsSDR110C-MI3, SDR110C-MI3 | ||||||||||
| DNA seq | atggcggtgaacgcccgggcggtgctcgccggcatcaagcacgccgcgcgcgtgatggcaccacgacgcaccggctccatcctctgcacggccagcgtggcgggcatgatgggcggcgagatgccccacgcgtacaacgtctccaaggcggcggtcataggtgtggtgcggtccgccgccggcgagctggcacgccacggcgtgcggctgaacgcgatctcgccgctcggcatcgcgacgccactggcgatgcgcgggttcggcgacatgctggcgtgggcggacgccgagcgggtgaggcggctcatcgaggaggacatgaacgagctagagggcgcgacgctggaggcggaggacatcgcgagggcggcggtgtacctcgcctccgacgaggccaagtacgtcaccgggcataacctcgtcgtcgacggcgggttcaccgtcgggaagcggctcaacgtggcgcgtgcttgagtttagaaaatcagaaaatttaatttccatgtggactttgttttatttgattaataattcagagtttatgtattgattaccagtttgttgtttagatttggtaatagggaaataaggataatcttaatccagaaactatcaattagtttttatactcgacatgtcataaaaatcatatatagaaatatgtacctaataggtgctttctttaaaataattattattcaattacatctcttcttttcctttcatccacgtttctcatcgtttttattcgtagttgctatatgtagagttggcttgcatatattttttacgtgatattaatTgctatgaaaactagctaaaatagagggttagaatcgtcctgagtagaccattcgcccacattctctttcaactaatcgcagcctttcaccatttaaatttctatatacctaatcttctaaaggaatcacaatatctttccatgtaattttattaatttctaatatttgtatttaagtttaaaacatcttatattttaggacagatgacacacaCAaagcaacagcagcgcgatgccatcttgttggactcttattacaaaattattggggtgtggtgtgtttcttttttctctttttccacgtgagatggcacatgccgtgtctctttgatgatgccaaagtttagattgtttcgtatatgtccgagatagatctgggagtattttgattttttttacactaaagagagagctttattagtgactgaataaagggttacattcttggtttaacaagtctagaatttgtactcgagcacaccgcctccactcagcactagacctagtactcgttgccattcgagcaagatcgtgagtcaccctattcgcttttctctttatcttgtgcacttgcatctgCTgaagacaccgcatgaccttttatctccaagattattgccagccagtttgatctcaatgagattttgttctgtagagcttggcaacctctgcattgtctaactccagaatgattggcatatggatccactgagctgcattcctgagaccttcaaggcaggatagcgcttccgcttcagtagctTatccacgaaggtgaagagtattttgttggattcattttgaaccaCAtctctctcactacatttttcacctccaattaatcatcgacgctgacatcatcctcctatcgtcagcatctaccaccgtattgtacctgctctagtggaatagtaccattattataacccctaaccgcacgttttaataactatttcatagattaaagtcaAtaatttaattattgtcctctagcacaataatagtaatccgtacattttccattcttttttcagatttttaatttataaactactcaaccaatccctctccacatactacagtctgtatactccgaggaacctggaagcgaagcaaatttcacgatgatgagcgcagcagccaacaaaattctcaggttcgcatcttctccggtagaaaacgctcgtgcaaactgtgaaattgtgatgaattcaaatttaaattttcttcggatttgtattatgttatatacgtacacgtgttgcagggagaggagcagaggtgttcgtccgatgttctcttccggcttggccgatcgcctcttctcctcgtcggcgtcaagctccaagaggttggaagggaaagtggccgtgatcaccggcgcggtgggcggcatcggcgaggccacggcgaaggagttcgtcaggaatggcgccaaggtcatcctcgccgatatccaggacgacctcggccgcgccatggccgccgagctcggcgcggacgccgcgtcgtacacgcactgcgacgtcaccgtcgaggcggacgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcatcgccggcgccgcggccccgcccacgctctcggcgctcgacctcgacgactacgaccgcgtcatggccgtcaacgcccggtccatggtggcctgcctcaagcacgcggcgcgcgtcatgtccccgcgccgcgccggctgcatcctctgcacggcgagctccacggcgctgatcggcgacctggcggcgccggcgtactgcatctcgaaggcggccgtcgtcggcatggtgcggacggtggcaaggcagctggcgcgcgacggcgtgcgcgtgaacgccatctcgccgcacatcatcccgacggcgctggtgacgcgcgtcatctccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggacatgcaggagctggaaggggcgtcgctggaggtggaggacgtggcgagggcggccgtcttcttggcgtccgacgaggccaagttcgtcaccggccacaacctcgtcgtcgacggcggcttcacggtcggcaaggacctcctCCggaatccaccgagctttgcttgacatcttggaggtgctcgtttcgaattgaaatgctaaaatagaattatactatatatcaggtaacaatttggtcaataatttgtttcaaatgtaaccttgatatatacatcggcatgtgtatgtccgtggttatcttactctacggaagtcctataatctggattggaattagtaaattgtttaacaattaacacgacgattgtagttgctcctatcattaatatatgatgcttaatgctaatcttagtgttaaaaacggttgtatcgtgcgagccataaatttctcctgttggaatctccttattgtacatgccgagttaagggtctttgatttgtagaaaaaaaaatatagaaattttggagaattttaattctatagaaaaaaatttcatcaaggtctttaaaacaaaggattgaattctatcatatcctttgaaaatcctacacaatggataatcctatagagattttagagagaacttaacaagaaattcaacctgttgaaaaattttcctttgagtctatctctcctatctgactcctgtgtgttccgcggtccaatcaaattgtcatttatgtgttttttctatgttttacaattctctatattgtacttgcgtacttatcaaaatcctgcattttctctatatcttcatttttccatttctgggattcaaatgggtcataaaggattgtttaagtcattttacaagggttgatggtctgttccatccagagtggttggatgtgtacttcttgctatttcaacaggtactacattaaaacttggcataaatacaaatcatttTggatgcttttcttctcatcagacgcagagccctaaaacagaacaatgataatctgatatcaatgaacatggctatatcaatgaatatgacagagagttctatcgtcgatgcagagtgttcaaatgcaagttagatcgattatgcctatcgctttaatccccggttatacttcatgacagagagttctgtcctcgatccacactcttcagcttttaaaatggcaactttttgttactaaaggggtccatcgattactcaaaggtagatgatcttgttctccaacaactatacatgatatattataaatatatatctcgttgaaacacacggacacattactttttcaacacagacacattactagcaaattataatttgtaaagaattttgagatgttttgtcatgttccgcgaagggcaacatgatatcaaaaggaagttctcagaacctaggactactattgtggtatttatttttctggacattattgcccaacagttggtcccctcatgtttaaaacatggctccaccaacgcacatgaaagacgccgagtgctctcgtcataggcagggccacaagcgccCtcataagggcccgtgcatgtccaatgtggagcctaatgtccgagctgatctttctaagaccacttcatcgcattatgcatgctccaatggtactttctctaggtcgataatatttgtccttttagataaagctgatgtcaaacttaaaaatatttgactaacctctaatatttgtttgtcttagaaatatggagctcaaatgtataaattaatcttaaaaaatatttcaacaaaatcatatatttgttgacgtttatatacatattataataaaaaatataggttagagttgtttcttagagaccgcatccgtatccaaaatgataagtattatcaatatggaggaagtagtactatcaccaaccatcgtgtatttcaaaaatttacgcaacacaaaacccactaattattgtccttaatttggcccttcacatatatatatatatatatatataatatatatatattaatatatatatatatatatatatatatatatatagacacacacatatcctaccattttcccccatttgtcctattaagtgtccttcttattatcccctatatatactcttctaagccgtacggaaaggggtgacgttcccagggttattcccctacgtttataatcagctcctttac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| CDS seq | atggcggtgaacgcccgggcggtgctcgccggcatcaagcacgccgcgcgcgtgatggcaccacgacgcaccggctccatcctctgcacggccagcgtggcgggcatgatgggcggcgagatgccccacgcgtacaacgtctccaaggcggcggtcataggtgtggtgcggtccgccgccggcgagctggcacgccacggcgtgcggctgaacgcgatctcgccgctcggcatcgcgacgccactggcgatgcgcgggttcggcgacatgctggcgtgggcggacgccgagcgggtgaggcggctcatcgaggaggacatgaacgagctagagggcgcgacgctggaggcggaggacatcgcgagggcggcggtgtacctcgcctccgacgaggccaagtacgtcaccgggcataacctcgtcgtcgacggcgggttcaccgtcgggaagcggctcaactctgtatactccgaggaacctggaagcgaagcaaatttcacgatgatgagcgcagcagccaacaaaattctcagggagaggagcagaggtgttcgtccgatgttctcttccggcttggccgatcgcctcttctcctcgtcggcgtcaagctccaagaggttggaagggaaagtggccgtgatcaccggcgcggtgggcggcatcggcgaggccacggcgaaggagttcgtcaggaatggcgccaaggtcatcctcgccgatatccaggacgacctcggccgcgccatggccgccgagctcggcgcggacgccgcgtcgtacacgcactgcgacgtcaccgtcgaggcggacgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcatcgccggcgccgcggccccgcccacgctctcggcgctcgacctcgacgactacgaccgcgtcatggccgtcaacgcccggtccatggtggcctgcctcaagcacgcggcgcgcgtcatgtccccgcgccgcgccggctgcatcctctgcacggcgagctccacggcgctgatcggcgacctggcggcgccggcgtactgcatctcgaaggcggccgtcgtcggcatggtgcggacggtggcaaggcagctggcgcgcgacggcgtgcgcgtgaacgccatctcgccgcacatcatcccgacggcgctggtgacgcgcgtcatctccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggacatgcaggagctggaaggggcgtcgctggaggtggaggacgtggcgagggcggccgtcttcttggcgtccgacgaggccaagttcgtcaccggccacaacctcgtcgtcgacggcggcttcacggagctggaaggggcgtcgctggaggtggaagacgtcgcgagggcggccgtctttttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcggcttcactgtaggcaaggttgccatcgtcttcttcatattctctagagaaattatgatgattttgatctttttattttcatacggggagcagaggtgttcgtccgatgttctcttccggctggccgatcgctccttctcctcgtcggcgtcaagctccagaaagttggatgggaaagtggccgtgatcaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaacggcgccaaggtcatccttgccgatatccaggacgacctcggccgcgcggtggccggcgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcacggtggaggcggatgtcgccgcggccgtcgacctcgccgtggcgcgccacggtcgtctcaccaacgccggcatcgccggcggcgcacctccggccacgctcgcggcgctcgacctcgacgactacgaccgcgtcatggccgtcaacgccaggtccatggtggcgtgcctcaagcacgcggcgcgcgtcatggcgccgcgccgcgccggctgcatcctctgcacggcgagctccacggcggtgctcggcaacatcgggcccctcgcgtactccatgtcgaaggcggccgtcgtcggcatggtgcagacgacggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacAccatctcgccgcacgccatcccgacggctatggcgctgggcatcatcgccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaaggggcgtcgctggagacgtggagggcggccgtcttcttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcggcttcactgtaggcaaggaatccggccgagcagctagccgcctaccttccgattccccgcgtctagaccgccagctcgccactgcgttgctcgcctataaaaggagcccgagctctcccaaattccccacaccattcccatctctctctcctctttctctccctcgttttgctctctgtaccgccacctatagccgttgtgccgcgccttctagcgccgccgtcaccggcggtgcctcgctggagcaccgcccgaggtcgccaccgcctctcctggccgccggccgcggagccgcgccccgctgccgcggcaccttgccgcctcaagccgagcaaagcgagagcaggaagacgaagccgagcctcgcctcccggcgccgccgtcgccgccggagccccaccggagtccgccgccacctccctcggccgctggtcgcctcgccgcgccccatcgccgcgagcatagctgctcaggtattcttctcctcgtcgtcaagatccagaaagttggatggcaaagtggccgtgataaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaatggcgccaaggttatcattgccgatatcaaggatgatctcggccgcgccgtggccggcgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcaccgtcgagaaggatgtcgcctcggccgtcgacctcgccgtggcgcgacacggccgcctcgacgtcgtgtacagcaacgccgccatcgcgggtggcgcgcctccggccacgctcgcggcgctcgacctcgacgagtacgaccgcgtcatggccgtcaacgccaggtccatgttggcgtgcgtcaagcacgcggcgcgcgtcatggcgccccgccgcgccggttgcatcctctgcacggccagcacggcggcggtgctcggcggcatggcggcgccggcgtactccatgtcgaaggcggccgtcgtcggcatggtgcggacggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctcgccgcacgcagtcccgacgccgatggcgataggtctcttctccgagacgttcccggcggcgaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaaggggcgtcgctggaggtggaagacgtggcgagggcggccgtcttcttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcgggttcacgagcatagctgctcaggtgttctccaacggctccagaaagttggatggcaaagtggccgtgatcaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaacggcgccaaggttatcattgccgatatccaggacgacctcggccgcgccgtggccgccgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcaccgtcgagaaggatgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcgtcataggagcaccggctccggcctcgctcgcggcgctcgacctcgacgagtacgaccgcgtcatggccgtcaacgcccggtcgatgttggcgtgcgtcaagcacgcggcgcgcgtcatggcgccgcgccgcgccggctgcatcctctgcacggccagcacggcggcggtgctcggcggcgtggcgtcgccggtgtactccatgtcgaaggcggccatcgtcggcatggtgcgcgcggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctcgccgcacgccatcccgacgccgatggcgctaggcatcatcgccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaagggacatcgctggaggtggaagacgtggcgagggcggccgtgttcttggcgtccgacgaggccaagttcgtcaccggccacaacctcgtcgtcgacggcggcttcacggtgggcaaagacctcctccgaaatccaccgagctctacttga
More
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| Protein seq | MAVNARAVLAGIKHAARVMAPRRTGSILCTASVAGMMGGEMPHAYNVSKAAVIGVVRSAAGELARHGVRLNAISPLGIATPLAMRGFGDMLAWADAERVRRLIEEDMNELEGATLEAEDIARAAVYLASDEAKYVTGHNLVVDGGFTVGKRLNSVYSEEPGSEANFTMMSAAANKILRERSRGVRPMFSSGLADRLFSSSASSSKRLEGKVAVITGAVGGIGEATAKEFVRNGAKVILADIQDDLGRAMAAELGADAASYTHCDVTVEADVAAAVDLAVARHGRLDVVYSNAGIAGAAAPPTLSALDLDDYDRVMAVNARSMVACLKHAARVMSPRRAGCILCTASSTALIGDLAAPAYCISKAAVVGMVRTVARQLARDGVRVNAISPHIIPTALVTRVISETFPAATAEEVRRMVTRDMQELEGASLEVEDVARAAVFLASDEAKFVTGHNLVVDGGFTELEGASLEVEDVARAAVFLASDEAKFITGHNLVVDGGFTVGKVAIVFFIFSREIMMILIFLFSYGEQRCSSDVLFRLADRSFSSSASSSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVILADIQDDLGRAVAGELGADAASYTHCDVTVEADVAAAVDLAVARHGRLTNAGIAGGAPPATLAALDLDDYDRVMAVNARSMVACLKHAARVMAPRRAGCILCTASSTAVLGNIGPLAYSMSKAAVVGMVQTTVARQLARDGVRVNTISPHAIPTAMALGIIAETFPAATAEEVRRMVTREMQELEGASLETWRAAVFLASDEAKFITGHNLVVDGGFTVGKESGRAASRLPSDSPRLDRQLATALLAYKRSPSSPKFPTPFPSLSPLSLPRFALCTATYSRCAAPSSAAVTGGASLEHRPRSPPPLLAAGRGAAPRCRGTLPPQAEQSESRKTKPSLASRRRRRRRSPTGVRRHLPRPLVASPRPIAASIAAQVFFSSSSRSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVIIADIKDDLGRAVAGELGADAASYTHCDVTVEKDVASAVDLAVARHGRLDVVYSNAAIAGGAPPATLAALDLDEYDRVMAVNARSMLACVKHAARVMAPRRAGCILCTASTAAVLGGMAAPAYSMSKAAVVGMVRTVARQLARDGVRVNAISPHAVPTPMAIGLFSETFPAATAEEVRRMVTREMQELEGASLEVEDVARAAVFLASDEAKFITGHNLVVDGGFTSIAAQVFSNGSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVIIADIQDDLGRAVAAELGADAASYTHCDVTVEKDVAAAVDLAVARHGRLDVVYSNAGVIGAPAPASLAALDLDEYDRVMAVNARSMLACVKHAARVMAPRRAGCILCTASTAAVLGGVASPVYSMSKAAIVGMVRAVARQLARDGVRVNAISPHAIPTPMALGIIAETFPAATAEEVRRMVTREMQELEGTSLEVEDVARAAVFLASDEAKFVTGHNLVVDGGFTVGKDLLRNPPSST |
||||||||||
| Function | Secoisolariciresinol dehydrogenase (Fragment) [UniProtKB/Swiss-Prot:Q94KL7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0026910 | OsLiXu_07g0026910.01 | Chr07 | 27886964 | 27911979 | + | NAM | ||
| CDS seq | atggcggtgaacgcccgggcggtgctcgccggcatcaagcacgccgcgcgcgtgatggcaccacgacgcaccggctccatcctctgcacggccagcgtggcgggcatgatgggcggcgagatgccccacgcgtacaacgtctccaaggcggcggtcataggtgtggtgcggtccgccgccggcgagctggcacgccacggcgtgcggctgaacgcgatctcgccgctcggcatcgcgacgccactggcgatgcgcgggttcggcgacatgctggcgtgggcggacgccgagcgggtgaggcggctcatcgaggaggacatgaacgagctagagggcgcgacgctggaggcggaggacatcgcgagggcggcggtgtacctcgcctccgacgaggccaagtacgtcaccgggcataacctcgtcgtcgacggcgggttcaccgtcgggaagcggctcaactctgtatactccgaggaacctggaagcgaagcaaatttcacgatgatgagcgcagcagccaacaaaattctcagggagaggagcagaggtgttcgtccgatgttctcttccggcttggccgatcgcctcttctcctcgtcggcgtcaagctccaagaggttggaagggaaagtggccgtgatcaccggcgcggtgggcggcatcggcgaggccacggcgaaggagttcgtcaggaatggcgccaaggtcatcctcgccgatatccaggacgacctcggccgcgccatggccgccgagctcggcgcggacgccgcgtcgtacacgcactgcgacgtcaccgtcgaggcggacgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcatcgccggcgccgcggccccgcccacgctctcggcgctcgacctcgacgactacgaccgcgtcatggccgtcaacgcccggtccatggtggcctgcctcaagcacgcggcgcgcgtcatgtccccgcgccgcgccggctgcatcctctgcacggcgagctccacggcgctgatcggcgacctggcggcgccggcgtactgcatctcgaaggcggccgtcgtcggcatggtgcggacggtggcaaggcagctggcgcgcgacggcgtgcgcgtgaacgccatctcgccgcacatcatcccgacggcgctggtgacgcgcgtcatctccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggacatgcaggagctggaaggggcgtcgctggaggtggaggacgtggcgagggcggccgtcttcttggcgtccgacgaggccaagttcgtcaccggccacaacctcgtcgtcgacggcggcttcacggagctggaaggggcgtcgctggaggtggaagacgtcgcgagggcggccgtctttttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcggcttcactgtaggcaaggttgccatcgtcttcttcatattctctagagaaattatgatgattttgatctttttattttcatacggggagcagaggtgttcgtccgatgttctcttccggctggccgatcgctccttctcctcgtcggcgtcaagctccagaaagttggatgggaaagtggccgtgatcaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaacggcgccaaggtcatccttgccgatatccaggacgacctcggccgcgcggtggccggcgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcacggtggaggcggatgtcgccgcggccgtcgacctcgccgtggcgcgccacggtcgtctcaccaacgccggcatcgccggcggcgcacctccggccacgctcgcggcgctcgacctcgacgactacgaccgcgtcatggccgtcaacgccaggtccatggtggcgtgcctcaagcacgcggcgcgcgtcatggcgccgcgccgcgccggctgcatcctctgcacggcgagctccacggcggtgctcggcaacatcgggcccctcgcgtactccatgtcgaaggcggccgtcgtcggcatggtgcagacgacggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacAccatctcgccgcacgccatcccgacggctatggcgctgggcatcatcgccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaaggggcgtcgctggagacgtggagggcggccgtcttcttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcggcttcactgtaggcaaggaatccggccgagcagctagccgcctaccttccgattccccgcgtctagaccgccagctcgccactgcgttgctcgcctataaaaggagcccgagctctcccaaattccccacaccattcccatctctctctcctctttctctccctcgttttgctctctgtaccgccacctatagccgttgtgccgcgccttctagcgccgccgtcaccggcggtgcctcgctggagcaccgcccgaggtcgccaccgcctctcctggccgccggccgcggagccgcgccccgctgccgcggcaccttgccgcctcaagccgagcaaagcgagagcaggaagacgaagccgagcctcgcctcccggcgccgccgtcgccgccggagccccaccggagtccgccgccacctccctcggccgctggtcgcctcgccgcgccccatcgccgcgagcatagctgctcaggtattcttctcctcgtcgtcaagatccagaaagttggatggcaaagtggccgtgataaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaatggcgccaaggttatcattgccgatatcaaggatgatctcggccgcgccgtggccggcgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcaccgtcgagaaggatgtcgcctcggccgtcgacctcgccgtggcgcgacacggccgcctcgacgtcgtgtacagcaacgccgccatcgcgggtggcgcgcctccggccacgctcgcggcgctcgacctcgacgagtacgaccgcgtcatggccgtcaacgccaggtccatgttggcgtgcgtcaagcacgcggcgcgcgtcatggcgccccgccgcgccggttgcatcctctgcacggccagcacggcggcggtgctcggcggcatggcggcgccggcgtactccatgtcgaaggcggccgtcgtcggcatggtgcggacggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctcgccgcacgcagtcccgacgccgatggcgataggtctcttctccgagacgttcccggcggcgaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaaggggcgtcgctggaggtggaagacgtggcgagggcggccgtcttcttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcgggttcacgagcatagctgctcaggtgttctccaacggctccagaaagttggatggcaaagtggccgtgatcaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaacggcgccaaggttatcattgccgatatccaggacgacctcggccgcgccgtggccgccgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcaccgtcgagaaggatgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcgtcataggagcaccggctccggcctcgctcgcggcgctcgacctcgacgagtacgaccgcgtcatggccgtcaacgcccggtcgatgttggcgtgcgtcaagcacgcggcgcgcgtcatggcgccgcgccgcgccggctgcatcctctgcacggccagcacggcggcggtgctcggcggcgtggcgtcgccggtgtactccatgtcgaaggcggccatcgtcggcatggtgcgcgcggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctcgccgcacgccatcccgacgccgatggcgctaggcatcatcgccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaagggacatcgctggaggtggaagacgtggcgagggcggccgtgttcttggcgtccgacgaggccaagttcgtcaccggccacaacctcgtcgtcgacggcggcttcacggtgggcaaagacctcctccgaaatccaccgagctctacttga
More
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| Protein seq | MAVNARAVLAGIKHAARVMAPRRTGSILCTASVAGMMGGEMPHAYNVSKAAVIGVVRSAAGELARHGVRLNAISPLGIATPLAMRGFGDMLAWADAERVRRLIEEDMNELEGATLEAEDIARAAVYLASDEAKYVTGHNLVVDGGFTVGKRLNSVYSEEPGSEANFTMMSAAANKILRERSRGVRPMFSSGLADRLFSSSASSSKRLEGKVAVITGAVGGIGEATAKEFVRNGAKVILADIQDDLGRAMAAELGADAASYTHCDVTVEADVAAAVDLAVARHGRLDVVYSNAGIAGAAAPPTLSALDLDDYDRVMAVNARSMVACLKHAARVMSPRRAGCILCTASSTALIGDLAAPAYCISKAAVVGMVRTVARQLARDGVRVNAISPHIIPTALVTRVISETFPAATAEEVRRMVTRDMQELEGASLEVEDVARAAVFLASDEAKFVTGHNLVVDGGFTELEGASLEVEDVARAAVFLASDEAKFITGHNLVVDGGFTVGKVAIVFFIFSREIMMILIFLFSYGEQRCSSDVLFRLADRSFSSSASSSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVILADIQDDLGRAVAGELGADAASYTHCDVTVEADVAAAVDLAVARHGRLTNAGIAGGAPPATLAALDLDDYDRVMAVNARSMVACLKHAARVMAPRRAGCILCTASSTAVLGNIGPLAYSMSKAAVVGMVQTTVARQLARDGVRVNTISPHAIPTAMALGIIAETFPAATAEEVRRMVTREMQELEGASLETWRAAVFLASDEAKFITGHNLVVDGGFTVGKESGRAASRLPSDSPRLDRQLATALLAYKRSPSSPKFPTPFPSLSPLSLPRFALCTATYSRCAAPSSAAVTGGASLEHRPRSPPPLLAAGRGAAPRCRGTLPPQAEQSESRKTKPSLASRRRRRRRSPTGVRRHLPRPLVASPRPIAASIAAQVFFSSSSRSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVIIADIKDDLGRAVAGELGADAASYTHCDVTVEKDVASAVDLAVARHGRLDVVYSNAAIAGGAPPATLAALDLDEYDRVMAVNARSMLACVKHAARVMAPRRAGCILCTASTAAVLGGMAAPAYSMSKAAVVGMVRTVARQLARDGVRVNAISPHAVPTPMAIGLFSETFPAATAEEVRRMVTREMQELEGASLEVEDVARAAVFLASDEAKFITGHNLVVDGGFTSIAAQVFSNGSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVIIADIQDDLGRAVAAELGADAASYTHCDVTVEKDVAAAVDLAVARHGRLDVVYSNAGVIGAPAPASLAALDLDEYDRVMAVNARSMLACVKHAARVMAPRRAGCILCTASTAAVLGGVASPVYSMSKAAIVGMVRAVARQLARDGVRVNAISPHAIPTPMALGIIAETFPAATAEEVRRMVTREMQELEGTSLEVEDVARAAVFLASDEAKFVTGHNLVVDGGFTVGKDLLRNPPSST
More
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0026910 | OsLiXu_07g0026910.02 | Chr07 | 27886964 | 27911979 | + | NAM | ||
| CDS seq | atggcggtgaacgcccgggcggtgctcgccggcatcaagcacgccgcgcgcgtgatggcaccacgacgcaccggctccatcctctgcacggccagcgtggcgggcatgatgggcggcgagatgccccacgcgtacaacgtctccaaggcggcggtcataggtgtggtgcggtccgccgccggcgagctggcacgccacggcgtgcggctgaacgcgatctcgccgctcggcatcgcgacgccactggcgatgcgcgggttcggcgacatgctggcgtgggcggacgccgagcgggtgaggcggctcatcgaggaggacatgaacgagctagagggcgcgacgctggaggcggaggacatcgcgagggcggcggtgtacctcgcctccgacgaggccaagtacgtcaccgggcataacctcgtcgtcgacggcgggttcaccgtcgggaagcggctcaactctgtatactccgaggaacctggaagcgaagcaaatttcacgatgatgagcgcagcagccaacaaaattctcagggagaggagcagaggtgttcgtccgatgttctcttccggcttggccgatcgcctcttctcctcgtcggcgtcaagctccaagaggttggaagggaaagtggccgtgatcaccggcgcggtgggcggcatcggcgaggccacggcgaaggagttcgtcaggaatggcgccaaggtcatcctcgccgatatccaggacgacctcggccgcgccatggccgccgagctcggcgcggacgccgcgtcgtacacgcactgcgacgtcaccgtcgaggcggacgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcatcgccggcgccgcggccccgcccacgctctcggcgctcgacctcgacgactacgaccgcgtcatggccgtcaacgcccggtccatggtggcctgcctcaagcacgcggcgcgcgtcatgtccccgcgccgcgccggctgcatcctctgcacggcgagctccacggcgctgatcggcgacctggcggcgccggcgtactgcatctcgaaggcggccgtcgtcggcatggtgcggacggtggcaaggcagctggcgcgcgacggcgtgcgcgtgaacgccatctcgccgcacatcatcccgacggcgctggtgacgcgcgtcatctccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggacatgcaggagctggaaggggcgtcgctggaggtggaggacgtggcgagggcggccgtcttcttggcgtccgacgaggccaagttcgtcaccggccacaacctcgtcgtcgacggcggcttcacggttgccatcgtcttcttcatattctctagagaaattatgatgattttgatctttttattttcatacggggagcagaggtgttcgtccgatgttctcttccggctggccgatcgctccttctcctcgtcggcgtcaagctccagaaagttggatgggaaagtggccgtgatcaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaacggcgccaaggtcatccttgccgatatccaggacgacctcggccgcgcggtggccggcgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcacggtggaggcggatgtcgccgcggccgtcgacctcgccgtggcgcgccacggtcgtctcaccaacgccggcatcgccggcggcgcacctccggccacgctcgcggcgctcgacctcgacgactacgaccgcgtcatggccgtcaacgccaggtccatggtggcgtgcctcaagcacgcggcgcgcgtcatggcgccgcgccgcgccggctgcatcctctgcacggcgagctccacggcggtgctcggcaacatcgggcccctcgcgtactccatgtcgaaggcggccgtcgtcggcatggtgcagacgacggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacAccatctcgccgcacgccatcccgacggctatggcgctgggcatcatcgccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaaggggcgtcgctggagacgtggagggcggccgtcttcttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcggcttcactgtaggcaaggaatccggccgagcagctagccgcctaccttccgattccccgcgtctagaccgccagctcgccactgcgttgctcgcctataaaaggagcccgagctctcccaaattccccacaccattcccatctctctctcctctttctctccctcgttttgctctctgtaccgccacctatagccgttgtgccgcgccttctagcgccgccgtcaccggcggtgcctcgctggagcaccgcccgaggtcgccaccgcctctcctggccgccggccgcggagccgcgccccgctgccgcggcaccttgccgcctcaagccgagcaaagcgagagcaggaagacgaagccgagcctcgcctcccggcgccgccgtcgccgccggagccccaccggagtccgccgccacctccctcggccgctggtcgcctcgccgcgccccatcgccgcgagcatagctgctcaggtattcttctcctcgtcgtcaagatccagaaagttggatggcaaagtggccgtgataaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaatggcgccaaggttatcattgccgatatcaaggatgatctcggccgcgccgtggccggcgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcaccgtcgagaaggatgtcgcctcggccgtcgacctcgccgtggcgcgacacggccgcctcgacgtcgtgtacagcaacgccgccatcgcgggtggcgcgcctccggccacgctcgcggcgctcgacctcgacgagtacgaccgcgtcatggccgtcaacgccaggtccatgttggcgtgcgtcaagcacgcggcgcgcgtcatggcgccccgccgcgccggttgcatcctctgcacggccagcacggcggcggtgctcggcggcatggcggcgccggcgtactccatgtcgaaggcggccgtcgtcggcatggtgcggacggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctcgccgcacgcagtcccgacgccgatggcgataggtctcttctccgagacgttcccggcggcgaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaaggggcgtcgctggaggtggaagacgtggcgagggcggccgtcttcttggcgtccgacgaggccaagttcatcaccggccacaacctcgtcgtcgacggcgggttcacgagcatagctgctcaggtgttctccaacggctccagaaagttggatggcaaagtggccgtgatcaccggcgcggcgagcggcatcggcgaggccacggcgaaggagttcgtcaggaacggcgccaaggttatcattgccgatatccaggacgacctcggccgcgccgtggccgccgagctcggcgccgacgccgcgtcgtacacgcactgcgacgtcaccgtcgagaaggatgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcgtcataggagcaccggctccggcctcgctcgcggcgctcgacctcgacgagtacgaccgcgtcatggccgtcaacgcccggtcgatgttggcgtgcgtcaagcacgcggcgcgcgtcatggcgccgcgccgcgccggctgcatcctctgcacggccagcacggcggcggtgctcggcggcgtggcgtcgccggtgtactccatgtcgaaggcggccatcgtcggcatggtgcgcgcggtggcgaggcagctggcgcgcgacggcgtgcgggtgaacgccatctcgccgcacgccatcccgacgccgatggcgctaggcatcatcgccgagacgttcccggcggccaccgcggaggaggtgaggaggatggtgacgagggagatgcaggagctggaagggacatcgctggaggtggaagacgtggcgagggcggccgtgttcttggcgtccgacgaggccaagttcgtcaccggccacaacctcgtcgtcgacggcggcttcacggtgggcaaagacctcctccgaaatccaccgagctctacttga
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| Protein seq | MAVNARAVLAGIKHAARVMAPRRTGSILCTASVAGMMGGEMPHAYNVSKAAVIGVVRSAAGELARHGVRLNAISPLGIATPLAMRGFGDMLAWADAERVRRLIEEDMNELEGATLEAEDIARAAVYLASDEAKYVTGHNLVVDGGFTVGKRLNSVYSEEPGSEANFTMMSAAANKILRERSRGVRPMFSSGLADRLFSSSASSSKRLEGKVAVITGAVGGIGEATAKEFVRNGAKVILADIQDDLGRAMAAELGADAASYTHCDVTVEADVAAAVDLAVARHGRLDVVYSNAGIAGAAAPPTLSALDLDDYDRVMAVNARSMVACLKHAARVMSPRRAGCILCTASSTALIGDLAAPAYCISKAAVVGMVRTVARQLARDGVRVNAISPHIIPTALVTRVISETFPAATAEEVRRMVTRDMQELEGASLEVEDVARAAVFLASDEAKFVTGHNLVVDGGFTVAIVFFIFSREIMMILIFLFSYGEQRCSSDVLFRLADRSFSSSASSSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVILADIQDDLGRAVAGELGADAASYTHCDVTVEADVAAAVDLAVARHGRLTNAGIAGGAPPATLAALDLDDYDRVMAVNARSMVACLKHAARVMAPRRAGCILCTASSTAVLGNIGPLAYSMSKAAVVGMVQTTVARQLARDGVRVNTISPHAIPTAMALGIIAETFPAATAEEVRRMVTREMQELEGASLETWRAAVFLASDEAKFITGHNLVVDGGFTVGKESGRAASRLPSDSPRLDRQLATALLAYKRSPSSPKFPTPFPSLSPLSLPRFALCTATYSRCAAPSSAAVTGGASLEHRPRSPPPLLAAGRGAAPRCRGTLPPQAEQSESRKTKPSLASRRRRRRRSPTGVRRHLPRPLVASPRPIAASIAAQVFFSSSSRSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVIIADIKDDLGRAVAGELGADAASYTHCDVTVEKDVASAVDLAVARHGRLDVVYSNAAIAGGAPPATLAALDLDEYDRVMAVNARSMLACVKHAARVMAPRRAGCILCTASTAAVLGGMAAPAYSMSKAAVVGMVRTVARQLARDGVRVNAISPHAVPTPMAIGLFSETFPAATAEEVRRMVTREMQELEGASLEVEDVARAAVFLASDEAKFITGHNLVVDGGFTSIAAQVFSNGSRKLDGKVAVITGAASGIGEATAKEFVRNGAKVIIADIQDDLGRAVAAELGADAASYTHCDVTVEKDVAAAVDLAVARHGRLDVVYSNAGVIGAPAPASLAALDLDEYDRVMAVNARSMLACVKHAARVMAPRRAGCILCTASTAAVLGGVASPVYSMSKAAIVGMVRAVARQLARDGVRVNAISPHAIPTPMALGIIAETFPAATAEEVRRMVTREMQELEGTSLEVEDVARAAVFLASDEAKFVTGHNLVVDGGFTVGKDLLRNPPSST
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0026910 | OsLiXu_07g0026910.03 | Chr07 | 27910967 | 27912155 | + | IsoSeq | ||
| CDS seq | atgtcgccgcggccgtcgacctcgccgtggcgcgccacggccgcctcgacgtcgtctacagcaacgccggcg |
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| Protein seq | MSPRPSTSPWRATAASTSSTATPA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr07 | 27889882 | 27898701 | + | OsLiXu_07g0026910.01 | OsLiXu_07g0026910.01,OsLiXu_07g0026910.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0663700 | RBH | 2.676528 | 2.934822 | 3.948423 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g46910 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0663600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0021740 | SBH | 0.000000 | 0.000000 | 2.932166 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026830 | RBH | 0.0 | 0.0 | 3.480390 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0026650 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026340 | RBH | 0.022496 | 0.102586 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026630 | SBH | 0.0 | 0.000000 | 4.313056 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0455100 | RBH | 1.3126495 | 5.3683205 | 0.829096 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027160 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0467500 | RBH | 0.2203465 | 0 | 0.5151205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026410 | RBH | 0.0 | 0.122489 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026760 | SBH | 0.0 | 2.073553 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026500 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0040690 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026420 | RBH | 0.0 | 3.255497 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026570 | RBH | 0.0 | 0.0 | 0.585537 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026340 | SBH | 0.098370 | 0.0 | 0.618520 |
