Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g04860 | OGI:07006270 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:2140732-2143984 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTTCAGAACGTAACTTCACATCAATAATTTCACACATATCAATCACTGAGATTACAGATTGAAATCAGTAGTTTCATTACCCCTCGAAATGTTTCAGCTAGAAGAAAGATATCTTACATGGGGACGCTGAAAATGTCGGTTGTTCTTGTCAGGAGAAAGGGAGCTTCATGATCATCACACCTCATGGTCTGCTCTGTGAAGGATTAGAGACCTGAATTTCATGAATTTTGCGCTGTATGTGCATCAACCTTCCGTTTTAATTCTTCAACACTATCCAGCACCAACATGAGCAGTTCATTTGATACCACTGCCTTCTCTGCCACTTCATAGAAGGATTTGCATAACAAATCAAACCTTCGTGCAACCGGTGAGTCGACCATCTCATTATAGGACCAGTTAGTAATGGTACCGTGTCTCCGAATCATATCCTTTCTCCATCGCTGCAATACATATTTGGAGGGTACTTTTTTGACCTTCAGTAGAGCAAGTACGGTAATGATGTGGCTACACAATATTCCCCGGAATTCGAAATGACGGCATGTGCATTTACATCTTCCATCACAATCATCTCTGTCCCACCACACTGTGAAATCCAAGCTACATTGTTGCTCCCTAATTTTAACATCTTGCGTCACCTTGAATATGTAAACCGAACCTTCCTGTTTCAGAAGAGTTGGATAACAGTACATCTTACCTTTTAGCTGCTCTTGAAATTCTTCAAACATTTTATTTGTATAAACCTTCTGGAATTTCTTCTCAATGCCATAATGGGTGACACATGGTACAACCTCATGTGAGGATTTCCAGTTAGCATCAGTTTCCTTACAATCAATGCCCACAATTGTTTTATTATATTGGTCCAGAAACTCGTCCAACGTTGTGGTAGAATTGATGTATCCATGAAATAAACTACCAATGCTTTCACTATTTTGTGTGCAAAACATACCAGCACAAAAGTTATTTTTCACATAAGTGGGCACCCATTTATGCCTATTACAGAACAGCATATTAAGCCATGCGCTTCTGCCATGAAGGCCAAACTTGTCAATTATCTTACTCCAATTGTTTTCAAAAACAGTTTGTGTCAATGAATTATGTACCACAGTTGAAAAAGCATTTTCAATGCTTTGAAATCCTGAGAATCCACTGAGATTTTCAGGCATCTTCTTCATGACAGACTGTAAACGCCATATATGACAAGTTTGTGGAAAAACTTTCTCGATAGCATCCTGAATCGCATCGCACTGATCAGTAATTATGACTTCTGGTGGCTTATTTGACATAGCTAGCCAGGATTTGAACAGCTATAGAAAGGTCACAGTGGTCTCATCTGATAGTAGTCCACATCCCAACAAAATCGGCTGCCTGTGATGATTTACACCAACAAAAGGAACAAGAGGGATGCTCTCCTTGTTCATTAAGTATGTAGTGTCAACTGTCACGACATCCGAGAAATATTTACATGAAGCCCTACTTCTTGCATCTGCCCAGAAAACATTTCTCAGGCAGGAGTCCTTGCCAAAGTCCAAAGCATAGAAAAAGCTAGGATTCTTGAACTGCATGCAGAAGAAGTAATGATAAAGCCTATATGCATCACTGAGCTTCAGTTTTCTTTCCAATTGCAAATTGTTCATGGGATCCTTTTGACCAAATGGGCGATTTTCAGCTTGCAAGCAAGGAGTACTGGACTTCTTGTTGGCATGATTGTCTGCTCTCCCATTTGACACCCTTCTTCTTTTAGCACACGAATCAGTTTTTTGTTACATATGAAAACTTCCATTCGACTTGTTTCACTTGGACTGAGATCGTGATTGTGCTCAAGCGTAACTGAAGATAAGAAGAATTTGTCGTCAGGACCATCAAGATCCACAATTATCTTAGCTGGACATTCATTCTGATGATGCTTCCATGCATTGTTTGAGGAGCATTGAGCGTTGTCTTGTCTTCTGCAAGCGAAGGTGAAGGATTGGAAAGTGCTTGAGATTCTCCTTGTTATAGAAAATCCCTTCTTCTGAGCATATCTCTCATAGAACACAAAAGCATCATTCACACTGGCAAATGCCATCCCTTCCTTTGGTTCCATGATTTCCAAGTCATCTTCTGTGGCTTGTTCATCAGTATCACTTCCTGATTCCTCATCGACAAAATCATCCTCATTAACCACTGTTTTCACGAGTGCATTTTCTACTGTTTCCAGGTGCACATTTATCTCTTGCACCTCATCAAGGGATCCGCTTGTTGCCATTACCTAAAGATTTAAGAAATTAAGAGAGTCATAAACCCAGTCGGTAAAAACCTAGAATACAGTATTTCTTTTTGAGGACTCTACTTACTGTGTGAGAATTTGTCACAGCAGCAAGGAAATAAACCAAGTTGCCTTCTAAATTCCAATGCTCAACTCTTTCCAGTGGATAGAAACCAGGTGAGATTTTTGCACTGCTTTAAGGGCTCAGCAACCACGATTTGACCACACCTAAAACGCAAATATTAGGGAATGACCTAATATTAAATAAATAGAAGGGTGAGGCTTCAAACCCAGGCCGGCTAGCCCACCACCTTGTGGAGCTAGCCAAAAAAACCCTTGAGCGTTTCTCACGATTTAACCACACCTAGAACACGACCACTCACAAGCTGAAATAAGTGGCGATAGGAAAAAAAAAAGGGAAAGCAAAGCTTCTGCTTACAACATTTCCCACCCTTTTCCCCGATAATGTTGTAATGTAAGCTATTCACATTAAAACAAAAGAACAAGTTTACCATTTTGACATGACATGATACTAGAAGGTTGAAGAATGAAGACTATATGAATCCGAGCAAAAACAGAACTCAGCATTCTAAGTTTCTAACCCATTAATCAACATAATAACTCCGTACTAGTACTATCCACACTCTACCCCTATTCTTGTTCAGGTATACTAACAGTATTCACTTCTACCAGGATCCAGGAGGCGAGGGTCTCTCATCGGCTGCTGCGCCGCAAATCAAACAGAAGACAATCTTTCATGCATCCTAAGTCCCAGATAAACACACCTGGAAGAGGAAGGACTCGTTGCCGCCGCCGGAGGCAACGTTGGGCCCCGCGAGAAACCGCTCCCCGTCCTCACGCCACCGCACACCGCTGCGAACCAAGCTGACGGGGAGCCGAGAACGGAGGAGCGCGAAGATGCCGGCGGCGGGAGGGAGAGCCGGCGCCGCCGGCGGCACAGGTGGAGGTGGGCGAGCGAGTTCGCCGGCGATGGCGAGGGCAACCAC
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| CDS seq | ATGTCAAATAAGCCACCAGAAGTCATAATTACTGATCAGTGCGATGCGATTCAGGATGCTATCGAGAAAGTTTTTCCACAAACTTGTCATATATGGCGTTTACAGTCTGTCATGAAGAAGATGCCTGAAAATCTCAGTGGATTCTCAGGATTTCAAAGCATTGAAAATGCTTTTTCAACTGTGGTACATAATTCATTGACACAAACTGTTTTTGAAAACAATTGGAGTAAGATAATTGACAAGTTTGGCCTTCATGGCAGAAGCGCATGGCTTAATATGCTGTTCTGTAATAGGCATAAATGGGTGCCCACTTATGTGAAAAATAACTTTTGTGCTGGTATGTTTTGCACACAAAATAGTGAAAGCATTGGTAGTTTATTTCATGGATACATCAATTCTACCACAACGTTGGACGAGTTTCTGGACCAATATAATAAAACAATTGTGGGCATTGATTGTAAGGAAACTGATGCTAACTGGAAATCCTCACATGAGGTTGTACCATGTGTCACCCATTATGGCATTGAGAAGAAATTCCAGAAGGTTTATACAAATAAAATGTTTGAAGAATTTCAAGAGCAGCTAAAAGGTAAGATGTACTGTTATCCAACTCTTCTGAAACAGGAAGGTTCGGTTTACATATTCAAGGTGACGCAAGATGTTAAAATTAGGGAGCAACAATGTAGCTTGGATTTCACAGTGTGGTGGGACAGAGATGATTGTGATGGAAGATGTAAATGCACATGCCGTCATTTCGAATTCCGGGGAATATTGTGTAGCCACATCATTACCGTACTTGCTCTACTGAAGGTCAAAAAAGTACCCTCCAAATATGTATTGCAGCGATGGAGAAAGGATATGATTCGGAGACACGGTACCATTACTAACTGGTCCTATAATGAGATGGTCGACTCACCGGTTGCACGAAGGTTTGATTTGTTATGCAAATCCTTCTATGAAGTGGCAGAGAAGGCAGTGGTATCAAATGAACTGCTCATGTTGGTGCTGGATAGTGTTGAAGAATTAAAACGGAAGGTTGATGCACATACAGCGCAAAATTCATGA
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| Protein seq | MSNKPPEVIITDQCDAIQDAIEKVFPQTCHIWRLQSVMKKMPENLSGFSGFQSIENAFSTVVHNSLTQTVFENNWSKIIDKFGLHGRSAWLNMLFCNRHKWVPTYVKNNFCAGMFCTQNSESIGSLFHGYINSTTTLDEFLDQYNKTIVGIDCKETDANWKSSHEVVPCVTHYGIEKKFQKVYTNKMFEEFQEQLKGKMYCYPTLLKQEGSVYIFKVTQDVKIREQQCSLDFTVWWDRDDCDGRCKCTCRHFEFRGILCSHIITVLALLKVKKVPSKYVLQRWRKDMIRRHGTITNWSYNEMVDSPVARRFDLLCKSFYEVAEKAVVSNELLMLVLDSVEELKRKVDAHTAQNS |
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| Function | Protein FAR1-RELATED SEQUENCE 6 [UniProtKB/Swiss-Prot:Q9SSQ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g04860 | LOC_Os07g04860.1 | Chr07 | 2140732 | 2143984 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCAAATAAGCCACCAGAAGTCATAATTACTGATCAGTGCGATGCGATTCAGGATGCTATCGAGAAAGTTTTTCCACAAACTTGTCATATATGGCGTTTACAGTCTGTCATGAAGAAGATGCCTGAAAATCTCAGTGGATTCTCAGGATTTCAAAGCATTGAAAATGCTTTTTCAACTGTGGTACATAATTCATTGACACAAACTGTTTTTGAAAACAATTGGAGTAAGATAATTGACAAGTTTGGCCTTCATGGCAGAAGCGCATGGCTTAATATGCTGTTCTGTAATAGGCATAAATGGGTGCCCACTTATGTGAAAAATAACTTTTGTGCTGGTATGTTTTGCACACAAAATAGTGAAAGCATTGGTAGTTTATTTCATGGATACATCAATTCTACCACAACGTTGGACGAGTTTCTGGACCAATATAATAAAACAATTGTGGGCATTGATTGTAAGGAAACTGATGCTAACTGGAAATCCTCACATGAGGTTGTACCATGTGTCACCCATTATGGCATTGAGAAGAAATTCCAGAAGGTTTATACAAATAAAATGTTTGAAGAATTTCAAGAGCAGCTAAAAGGTAAGATGTACTGTTATCCAACTCTTCTGAAACAGGAAGGTTCGGTTTACATATTCAAGGTGACGCAAGATGTTAAAATTAGGGAGCAACAATGTAGCTTGGATTTCACAGTGTGGTGGGACAGAGATGATTGTGATGGAAGATGTAAATGCACATGCCGTCATTTCGAATTCCGGGGAATATTGTGTAGCCACATCATTACCGTACTTGCTCTACTGAAGGTCAAAAAAGTACCCTCCAAATATGTATTGCAGCGATGGAGAAAGGATATGATTCGGAGACACGGTACCATTACTAACTGGTCCTATAATGAGATGGTCGACTCACCGGTTGCACGAAGGTTTGATTTGTTATGCAAATCCTTCTATGAAGTGGCAGAGAAGGCAGTGGTATCAAATGAACTGCTCATGTTGGTGCTGGATAGTGTTGAAGAATTAAAACGGAAGGTTGATGCACATACAGCGCAAAATTCATGA
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| Protein seq | MSNKPPEVIITDQCDAIQDAIEKVFPQTCHIWRLQSVMKKMPENLSGFSGFQSIENAFSTVVHNSLTQTVFENNWSKIIDKFGLHGRSAWLNMLFCNRHKWVPTYVKNNFCAGMFCTQNSESIGSLFHGYINSTTTLDEFLDQYNKTIVGIDCKETDANWKSSHEVVPCVTHYGIEKKFQKVYTNKMFEEFQEQLKGKMYCYPTLLKQEGSVYIFKVTQDVKIREQQCSLDFTVWWDRDDCDGRCKCTCRHFEFRGILCSHIITVLALLKVKKVPSKYVLQRWRKDMIRRHGTITNWSYNEMVDSPVARRFDLLCKSFYEVAEKAVVSNELLMLVLDSVEELKRKVDAHTAQNS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.063233 | 0.091057 | 0.235322 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0141500 | RBH | 0.093649 | 0.135214 | 0.915561 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0141500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0010680 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0000500 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0008050 | SBH | 0.163876 | 2.266307 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0008020 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0036900 | RBH | 2.443092 | 3.0872255 | 4.310263 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000220 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0042200 | RBH | 2.805018 | 1.3453065 | 5.1529265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0000220 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000220 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000220 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0010600 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G003130 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0008080 | SBH | 0.0 | 0.0 | 0.0 |
