Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0141500 | OGI:07006270 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:2140736-2143984 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAGAACGTAACTTCACATCAATAATTTCACACATATCAATCACTGAGATTACAGATTGAAATCAGTAGTTTCATTACCCCTCGAAATGTTTCAGCTAGAAGAAAGATATCTTACATGGGGACGCTGAAAATGTCGGTTGTTCTTGTCAGGAGAAAGGGAGCTTCATGATCATCACACCTCATGGTCTGCTCTGTGAAGGATTAGAGACCTGAATTTCATGAATTTTGCGCTGTATGTGCATCAACCTTCCGTTTTAATTCTTCAACACTATCCAGCACCAACATGAGCAGTTCATTTGATACCACTGCCTTCTCTGCCACTTCATAGAAGGATTTGCATAACAAATCAAACCTTCGTGCAACCGGTGAGTCGACCATCTCATTATAGGACCAGTTAGTAATGGTACCGTGTCTCCGAATCATATCCTTTCTCCATCGCTGCAATACATATTTGGAGGGTACTTTTTTGACCTTCAGTAGAGCAAGTACGGTAATGATGTGGCTACACAATATTCCCCGGAATTCGAAATGACGGCATGTGCATTTACATCTTCCATCACAATCATCTCTGTCCCACCACACTGTGAAATCCAAGCTACATTGTTGCTCCCTAATTTTAACATCTTGCGTCACCTTGAATATGTAAACCGAACCTTCCTGTTTCAGAAGAGTTGGATAACAGTACATCTTACCTTTTAGCTGCTCTTGAAATTCTTCAAACATTTTATTTGTATAAACCTTCTGGAATTTCTTCTCAATGCCATAATGGGTGACACATGGTACAACCTCATGTGAGGATTTCCAGTTAGCATCAGTTTCCTTACAATCAATGCCCACAATTGTTTTATTATATTGGTCCAGAAACTCGTCCAACGTTGTGGTAGAATTGATGTATCCATGAAATAAACTACCAATGCTTTCACTATTTTGTGTGCAAAACATACCAGCACAAAAGTTATTTTTCACATAAGTGGGCACCCATTTATGCCTATTACAGAACAGCATATTAAGCCATGCGCTTCTGCCATGAAGGCCAAACTTGTCAATTATCTTACTCCAATTGTTTTCAAAAACAGTTTGTGTCAATGAATTATGTACCACAGTTGAAAAAGCATTTTCAATGCTTTGAAATCCTGAGAATCCACTGAGATTTTCAGGCATCTTCTTCATGACAGACTGTAAACGCCATATATGACAAGTTTGTGGAAAAACTTTCTCGATAGCATCCTGAATCGCATCGCACTGATCAGTAATTATGACTTCTGGTGGCTTATTTGACATAGCTAGCCAGGATTTGAACAGCTATAGAAAGGTCACAGTGGTCTCATCTGATAGTAGTCCACATCCCAACAAAATCGGCTGCCTGTGATGATTTACACCAACAAAAGGAACAAGAGGGATGCTCTCCTTGTTCATTAAGTATGTAGTGTCAACTGTCACGACATCCGAGAAATATTTACATGAAGCCCTACTTCTTGCATCTGCCCAGAAAACATTTCTCAGGCAGGAGTCCTTGCCAAAGTCCAAAGCATAGAAAAAGCTAGGATTCTTGAACTGCATGCAGAAGAAGTAATGATAAAGCCTATATGCATCACTGAGCTTCAGTTTTCTTTCCAATTGCAAATTGTTCATGGGATCCTTTTGACCAAATGGGCGATTTTCAGCTTGCAAGCAAGGAGTACTGGACTTCTTGTTGGCATGATTGTCTGCTCTCCCATTTGACACCCTTCTTCTTTTAGCACACGAATCAGTTTTTTGTTACATATGAAAACTTCCATTCGACTTGTTTCACTTGGACTGAGATCGTGATTGTGCTCAAGCGTAACTGAAGATAAGAAGAATTTGTCGTCAGGACCATCAAGATCCACAATTATCTTAGCTGGACATTCATTCTGATGATGCTTCCATGCATTGTTTGAGGAGCATTGAGCGTTGTCTTGTCTTCTGCAAGCGAAGGTGAAGGATTGGAAAGTGCTTGAGATTCTCCTTGTTATAGAAAATCCCTTCTTCTGAGCATATCTCTCATAGAACACAAAAGCATCATTCACACTGGCAAATGCCATCCCTTCCTTTGGTTCCATGATTTCCAAGTCATCTTCTGTGGCTTGTTCATCAGTATCACTTCCTGATTCCTCATCGACAAAATCATCCTCATTAACCACTGTTTTCACGAGTGCATTTTCTACTGTTTCCAGGTGCACATTTATCTCTTGCACCTCATCAAGGGATCCGCTTGTTGCCATTACCTAAAGATTTAAGAAATTAAGAGAGTCATAAACCCAGTCGGTAAAAACCTAGAATACAGTATTTCTTTTTGAGGACTCTACTTACTGTGTGAGAATTTGTCACAGCAGCAAGGAAATAAACCAAGTTGCCTTCTAAATTCCAATGCTCAACTCTTTCCAGTGGATAGAAACCAGGTGAGATTTTTGCACTGCTTTAAGGGCTCAGCAACCACGATTTGACCACACCTAAAACGCAAATATTAGGGAATGACCTAATATTAAATAAATAGAAGGGTGAGGCTTCAAACCCAGGCCGGCTAGCCCACCACCTTGTGGAGCTAGCCAAAAAAACCCTTGAGCGTTTCTCACGATTTAACCACACCTAGAACACGACCACTCACAAGCTGAAATAAGTGGCGATAGGAAAAAAAAAAGGGAAAGCAAAGCTTCTGCTTACAACATTTCCCACCCTTTTCCCCGATAATGTTGTAATGTAAGCTATTCACATTAAAACAAAAGAACAAGTTTACCATTTTGACATGACATGATACTAGAAGGTTGAAGAATGAAGACTATATGAATCCGAGCAAAAACAGAACTCAGCATTCTAAGTTTCTAACCCATTAATCAACATAATAACTCCGTACTAGTACTATCCACACTCTACCCCTATTCTTGTTCAGGTATACTAACAGTATTCACTTCTACCAGGATCCAGGAGGCGAGGGTCTCTCATCGGCTGCTGCGCCGCAAATCAAACAGAAGACAATCTTTCATGCATCCTAAGTCCCAGATAAACACACCTGGAAGAGGAAGGACTCGTTGCCGCCGCCGGAGGCAACGTTGGGCCCCGCGAGAAACCGCTCCCCGTCCTCACGCCACCGCACACCGCTGCGAACCAAGCTGACGGGGAGCCGAGAACGGAGGAGCGCGAAGATGCCGGCGGCGGGAGGGAGAGCCGGCGCCGCCGGCGGCACAGGTGGAGGTGGGCGAGCGAGTTCGCCGGCGATGGCGAGGGCAACCAC
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| CDS seq | ATGTCAAATAAGCCACCAGAAGTCATAATTACTGATCAGTGCGATGCGATTCAGGATGCTATCGAGAAAGTTTTTCCACAAACTTGTCATATATGGCGTTTACAGTCTGTCATGAAGAAGATGCCTGAAAATCTCAGTGGATTCTCAGGATTTCAAAGCATTGAAAATGCTTTTTCAACTGTGGTACATAATTCATTGACACAAACTGTTTTTGAAAACAATTGGAGTAAGATAATTGACAAGTTTGGCCTTCATGGCAGAAGCGCATGGCTTAATATGCTGTTCTGTAATAGGCATAAATGGGTGCCCACTTATGTGAAAAATAACTTTTGTGCTGGTATGTTTTGCACACAAAATAGTGAAAGCATTGGTAGTTTATTTCATGGATACATCAATTCTACCACAACGTTGGACGAGTTTCTGGACCAATATAATAAAACAATTGTGGGCATTGATTGTAAGGAAACTGATGCTAACTGGAAATCCTCACATGAGGTTGTACCATGTGTCACCCATTATGGCATTGAGAAGAAATTCCAGAAGGTTTATACAAATAAAATGTTTGAAGAATTTCAAGAGCAGCTAAAAGGTAAGATGTACTGTTATCCAACTCTTCTGAAACAGGAAGGTTCGGTTTACATATTCAAGGTGACGCAAGATGTTAAAATTAGGGAGCAACAATGTAGCTTGGATTTCACAGTGTGGTGGGACAGAGATGATTGTGATGGAAGATGTAAATGCACATGCCGTCATTTCGAATTCCGGGGAATATTGTGTAGCCACATCATTACCGTACTTGCTCTACTGAAGGTCAAAAAAGTACCCTCCAAATATGTATTGCAGCGATGGAGAAAGGATATGATTCGGAGACACGGTACCATTACTAACTGGTCCTATAATGAGATGGTCGACTCACCGGTTGCACGAAGGTTTGATTTGTTATGCAAATCCTTCTATGAAGTGGCAGAGAAGGCAGTGGTATCAAATGAACTGCTCATGTTGGTGCTGGATAGTGTTGAAGAATTAAAACGGAAGGTTGATGCACATACAGCGCAAAATTCATGA
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| Protein seq | MSNKPPEVIITDQCDAIQDAIEKVFPQTCHIWRLQSVMKKMPENLSGFSGFQSIENAFSTVVHNSLTQTVFENNWSKIIDKFGLHGRSAWLNMLFCNRHKWVPTYVKNNFCAGMFCTQNSESIGSLFHGYINSTTTLDEFLDQYNKTIVGIDCKETDANWKSSHEVVPCVTHYGIEKKFQKVYTNKMFEEFQEQLKGKMYCYPTLLKQEGSVYIFKVTQDVKIREQQCSLDFTVWWDRDDCDGRCKCTCRHFEFRGILCSHIITVLALLKVKKVPSKYVLQRWRKDMIRRHGTITNWSYNEMVDSPVARRFDLLCKSFYEVAEKAVVSNELLMLVLDSVEELKRKVDAHTAQNS |
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| Function | Protein FAR1-RELATED SEQUENCE 6 [UniProtKB/Swiss-Prot:Q9SSQ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0141500 | OsNip_07t0141500-01 | Chr07 | 2140736 | 2143984 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCAAATAAGCCACCAGAAGTCATAATTACTGATCAGTGCGATGCGATTCAGGATGCTATCGAGAAAGTTTTTCCACAAACTTGTCATATATGGCGTTTACAGTCTGTCATGAAGAAGATGCCTGAAAATCTCAGTGGATTCTCAGGATTTCAAAGCATTGAAAATGCTTTTTCAACTGTGGTACATAATTCATTGACACAAACTGTTTTTGAAAACAATTGGAGTAAGATAATTGACAAGTTTGGCCTTCATGGCAGAAGCGCATGGCTTAATATGCTGTTCTGTAATAGGCATAAATGGGTGCCCACTTATGTGAAAAATAACTTTTGTGCTGGTATGTTTTGCACACAAAATAGTGAAAGCATTGGTAGTTTATTTCATGGATACATCAATTCTACCACAACGTTGGACGAGTTTCTGGACCAATATAATAAAACAATTGTGGGCATTGATTGTAAGGAAACTGATGCTAACTGGAAATCCTCACATGAGGTTGTACCATGTGTCACCCATTATGGCATTGAGAAGAAATTCCAGAAGGTTTATACAAATAAAATGTTTGAAGAATTTCAAGAGCAGCTAAAAGGTAAGATGTACTGTTATCCAACTCTTCTGAAACAGGAAGGTTCGGTTTACATATTCAAGGTGACGCAAGATGTTAAAATTAGGGAGCAACAATGTAGCTTGGATTTCACAGTGTGGTGGGACAGAGATGATTGTGATGGAAGATGTAAATGCACATGCCGTCATTTCGAATTCCGGGGAATATTGTGTAGCCACATCATTACCGTACTTGCTCTACTGAAGGTCAAAAAAGTACCCTCCAAATATGTATTGCAGCGATGGAGAAAGGATATGATTCGGAGACACGGTACCATTACTAACTGGTCCTATAATGAGATGGTCGACTCACCGGTTGCACGAAGGTTTGATTTGTTATGCAAATCCTTCTATGAAGTGGCAGAGAAGGCAGTGGTATCAAATGAACTGCTCATGTTGGTGCTGGATAGTGTTGAAGAATTAAAACGGAAGGTTGATGCACATACAGCGCAAAATTCATGA
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| Protein seq | MSNKPPEVIITDQCDAIQDAIEKVFPQTCHIWRLQSVMKKMPENLSGFSGFQSIENAFSTVVHNSLTQTVFENNWSKIIDKFGLHGRSAWLNMLFCNRHKWVPTYVKNNFCAGMFCTQNSESIGSLFHGYINSTTTLDEFLDQYNKTIVGIDCKETDANWKSSHEVVPCVTHYGIEKKFQKVYTNKMFEEFQEQLKGKMYCYPTLLKQEGSVYIFKVTQDVKIREQQCSLDFTVWWDRDDCDGRCKCTCRHFEFRGILCSHIITVLALLKVKKVPSKYVLQRWRKDMIRRHGTITNWSYNEMVDSPVARRFDLLCKSFYEVAEKAVVSNELLMLVLDSVEELKRKVDAHTAQNS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.093649 | 0.135214 | 0.915561 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g04860 | RBH | 0.063233 | 0.091057 | 0.235322 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0141500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0015620 | SBH | 0.779705 | 3.579128 | 3.203560 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0008370 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0015500 | SBH | 1.347188 | 3.022929 | 5.137872 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0015390 | SBH | 0.072473 | 0.229726 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0022190 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0036900 | RBH | 2.443092 | 3.0872255 | 4.310263 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000220 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0042200 | SBH | 2.805018 | 1.3453065 | 5.1529265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0021910 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0022080 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0022010 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0008270 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0021920 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G015360 | SBH | 0.233767 | 2.380677 | 1.921892 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0008080 | RBH | 0.0 | 0.0 | 0.0 |
