Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g01870 | OGI:07001360 | 6/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:523361-525795 | ||||||||
| Gene Symbol | RPL13A, OsRPL13a, RPL13a | ||||||||||
| DNA seq | TTGGCATAAAGTGTCTGACATTAAAATATTCAGGCATAAAGTGTCTGACATTAAAATATTCAGGAGGAGTATTGATTCTATCTATATTATACAGTCTATAATCTGGTGTTCTGCACAAACAATTTTAAAAAAATACACAACAGAGCTAATTACACGGTACAATTGGTGAATAGAAAGGAAGAAATGAGCAAGCGAAGGTGCTAGGGCTAGGGGATAAAACGTAGTAGAAGGAACCTAGCCGAGCATAATATTAACAGACATCATTGCAAAGAATGAGAAAATTAGTTCCGAACCACAGGGTAAAAATCACAGGCCAAATTACTCCCTCGTTAAGTAGGATCAAAATAACCCAGAACAAACCAGAGGGGTCATTTGTCCAGTTAGGAGAGTTCAAGGTTGAAAATTCAAGAGGGAAAATCAGATCAAGCCAATATAACTCTCTAGTATTCAATTGGAACAAAATTATCATGTTTCGACAGACATATCATTTCACTTCTCATGGTACCGATAAGCAGAAATATTATAAAGGCGAAAAGAAAATTGATGACAATCAGGCCAATCAATATTTGATTGGGGCCAAAATATCTATCTGAGAACCCAGCTTCTCCTCAGCAGCTTTCTCAGCCTTGACACGAAGCCTTGTTAATTGCTTCCTCCTCTCGTATGCAACCTTAGCCTTCTCCTTTCTCTTCTCCTCCAATTCCTGCAGGTGCAATAGACAAGGTGATCAGTGTGCTTTCATGTATAAGAACTAAAGGGAAACATAAAAAGCCCAACCAGAATTGAGATGATAACAGCCTAGAAATGCAGGACATGGTTGAAATAATAGCACAAACTCAGAAACAAAGCAGATAAATGTATCAAACAGAATATTTTGTTGTGAGAAATGGCACAGTTGGTCAGAAGTAGCTGGTTGTAAACATCATTCTGAAAAATCAGTGAGAATACATGTATTTTTTCTTCATTTTACCAATCATGCCAAATATGCTATTTAACTCAACATGGATTAGAAAAAAAAACATGCTGTGTAACAATTGAAAAGGGGATGCAAACAAGAAAAAAAAAGATGCATTTGCAAATTCACAGCCATAGCATAAGTAATCACAGGTTTATGGGAATTCCATCATCTTTGTGCAAATAAATAAATAGGATACTTAAGATTTCGTGCATCATCAGAGTCATCAACTAATCTCAGACAGTTGAGGCTATGGTGTAAAACAAAAGCTAGAGAGGTGTACAGCATAAAAGTAGCTCAGCAAAAACCTACATATTCAAATCCAGAGCATGTTGAGTTTGAGTTCAACGCGTTACCACCGTACAGTTGTACAATCAAATAGCTACAAGGGCCCAATATTCACAAAAGTGATCACATAATACCATAACATTCCAAGATGAACTATTCTTAACAGTCCAACACATGTATTCAGCATTGCATTCATCCTAACACGTTCAGTTCAATAGTACTCCTACATGTATTTAGCATATCCATTCATCCGAAAAGTAAAAGGGGGCACATGTGTACATCATATGCATTCAACCGGATTGTGATTCGGTGACATTCCCCCGTGACATTGAGTCACTGACATGTGGGTCCAAACACATGTGGGTCCCACATATCAGTGACTCAATGTCACCGAGAATGTCACGGGGGAATGTCACTGAATCTGCGTCCCATTCAACCTAAAACTAAAAGCATTACAGCAGCATATGCATTCAAGCTAAAACGAAAAGCAGCGTGAATATGAATACAGAAAGGAAATGTACCCTGATGGTGTCGTGGTAGTTCCAGCCGACCTCCTTGGAGAGCTGGCCGAGGAGGCAGTACTTGTGGCCGGGCTGGAGGCGAAGAACCCTAGAAGCCATGGATTAGTTCATGGAGGAAAAGAAAAGGAGAGGAGAGGAGAGGAAAGGGTTCGAAGCGAGCGTACTTGAGGGCGTCGGGGACGACCATGCGCTTGGTGCGGTCGTAGGGAGGGGGGACGCCGTCGAAGGCCTTGAGGTTGGCGAGGGCGGCCTCGCCGCGGGGGGTCTTGTGGGGGATCATGCCGCGGACGGTGCGCCAGAAGATGCGGGAGGGGGCGCGGAAGTGGATGGGGCCATGGGAGGGCTTGGTGTTCATCCGCTTGCGGAGGAACCGGAGGTACTTCATCTTCTGCCGGACGAGCCCGCCGGAGATGCACATCTCCTCGCACCGCACCACCACCACCCGCTGCCCGTTCAGGAGCTCCTTCGCCACCAGCGACGCCAGCCGCCCCAGCATGTGGTGCCGCGCGTCCACCACCACCCGCCGCGTGCACAGCCCCGAACCCGACACCATCTTCCTCTCCTTTTTCTTCTTCTTCTCCGGTGGGGGTGGTAGGTGGTGGAACGCGGCGGCGGCGGCGGCGGCTGCGGAGAAGCGAAGCTCTAGGGTTTACGAATGAATCTCCTTTTAT
More
|
||||||||||
| CDS seq | ATGGTGTCGGGTTCGGGGCTGTGCACGCGGCGGGTGGTGGTGGACGCGCGGCACCACATGCTGGGGCGGCTGGCGTCGCTGGTGGCGAAGGAGCTCCTGAACGGGCAGCGGGTGGTGGTGGTGCGGTGCGAGGAGATGTGCATCTCCGGCGGGCTCGTCCGGCAGAAGATGAAGTACCTCCGGTTCCTCCGCAAGCGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCGCCCCCTCCCGCATCTTCTGGCGCACCGTCCGCGGCATGATCCCCCACAAGACCCCCCGCGGCGAGGCCGCCCTCGCCAACCTCAAGGCCTTCGACGGCGTCCCCCCTCCCTACGACCGCACCAAGCGCATGGTCGTCCCCGACGCCCTCAAGGTTCTTCGCCTCCAGCCCGGCCACAAGTACTGCCTCCTCGGCCAGCTCTCCAAGGAGGTCGGCTGGAACTACCACGACACCATCAGGGAATTGGAGGAGAAGAGAAAGGAGAAGGCTAAGGTTGCATACGAGAGGAGGAAGCAATTAACAAGGCTTCGTGTCAAGGCTGAGAAAGCTGCTGAGGAGAAGCTGGGTTCTCAGATAGATATTTTGGCCCCAATCAAATATTGA
More
|
||||||||||
| Protein seq | MVSGSGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVPDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKAKVAYERRKQLTRLRVKAEKAAEEKLGSQIDILAPIKY |
||||||||||
| Function | 60S ribosomal protein L13a-4 [UniProtKB/Swiss-Prot:Q9FKC0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g01870 | LOC_Os07g01870.1 | Chr07 | 523361 | 525795 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTGTCGGGTTCGGGGCTGTGCACGCGGCGGGTGGTGGTGGACGCGCGGCACCACATGCTGGGGCGGCTGGCGTCGCTGGTGGCGAAGGAGCTCCTGAACGGGCAGCGGGTGGTGGTGGTGCGGTGCGAGGAGATGTGCATCTCCGGCGGGCTCGTCCGGCAGAAGATGAAGTACCTCCGGTTCCTCCGCAAGCGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCGCCCCCTCCCGCATCTTCTGGCGCACCGTCCGCGGCATGATCCCCCACAAGACCCCCCGCGGCGAGGCCGCCCTCGCCAACCTCAAGGCCTTCGACGGCGTCCCCCCTCCCTACGACCGCACCAAGCGCATGGTCGTCCCCGACGCCCTCAAGGTTCTTCGCCTCCAGCCCGGCCACAAGTACTGCCTCCTCGGCCAGCTCTCCAAGGAGGTCGGCTGGAACTACCACGACACCATCAGGGAATTGGAGGAGAAGAGAAAGGAGAAGGCTAAGGTTGCATACGAGAGGAGGAAGCAATTAACAAGGCTTCGTGTCAAGGCTGAGAAAGCTGCTGAGGAGAAGCTGGGTTCTCAGATAGATATTTTGGCCCCAATCAAATATTGA
More
|
|||||||
| Protein seq | MVSGSGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVPDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKAKVAYERRKQLTRLRVKAEKAAEEKLGSQIDILAPIKY
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g01870 | LOC_Os07g01870.2 | Chr07 | 523361 | 525795 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTGTCGGGTTCGGGGCTGTGCACGCGGCGGGTGGTGGTGGACGCGCGGCACCACATGCTGGGGCGGCTGGCGTCGCTGGTGGCGAAGGAGCTCCTGAACGGGCAGCGGGTGGTGGTGGTGCGGTGCGAGGAGATGTGCATCTCCGGCGGGCTCGTCCGGCAGAAGATGAAGTACCTCCGGTTCCTCCGCAAGCGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCGCCCCCTCCCGCATCTTCTGGCGCACCGTCCGCGGCATGATCCCCCACAAGACCCCCCGCGGCGAGGCCGCCCTCGCCAACCTCAAGGCCTTCGACGGCGTCCCCCCTCCCTACGACCGCACCAAGCGCATGGTCGTCCCCGACGCCCTCAACCCGGCCACAAGTACTGCCTCCTCGGCCAGCTCTCCAAGGAGGTCGGCTGGAACTACCACGACACCATCAGGGAATTGGAGGAGAAGAGAAAGGAGAAGGCTAAGGTTGCATACGAGAGGAGGAAGCAATTAA
More
|
|||||||
| Protein seq | MVSGSGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVPDALNPATSTASSASSPRRSAGTTTTPSGNWRRRERRRLRLHTRGGSN |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.222479 | 5.117732 | 3.685026 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0109500 | RBH | 11.224714 | 11.289791 | 20.839504 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g54890 | RBH | 10.840238 | 11.525134 | 12.415773 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0109500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0000600 | RBH | 2.237136 | 23.446054 | 11.012978 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0034960 | SBH | 0.426596 | 48.806316 | 17.503435 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035050 | SBH | 12.409028 | 151.115402 | 48.108536 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035350 | SBH | 0.766065 | 11.454754 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0034870 | SBH | 46.211365 | 360.600372 | 83.709511 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0008600 | RBH | 32.3449075 | 35.3608935 | 15.3475325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0034650 | SBH | 2.656470 | 19.483858 | 8.316833 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0532800 | SBH | 7.497479 | 17.100666 | 28.6753015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035130 | SBH | 1.953057 | 4.088815 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000630 | RBH | 1.292738 | 82.622047 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000630 | RBH | 6.923875 | 43.955902 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0000690 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0034850 | SBH | 2.298310 | 143.527191 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G034640 | SBH | 3.311990 | 118.699951 | 29.019211 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034480 | SBH | 9.037729 | 173.153503 | 59.742760 |
