Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0000690 | OGI:07001360 | 6/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:467890-470358 | ||||||||
| Gene Symbol | RPL13A, OsRPL13a, RPL13a | ||||||||||
| DNA seq | ggcataaagtgtctgacattaaaatattcatgcataaagtgtctgacattaaatattcaggaggagtattgattctatctatattatacagtctatatctggtgttctgcacaaacaatttaaaaaatacacaacagagctaattacacggtacaattggtgaatagaaaggaagaatgcagcagcgaaggtgctagggctagggataaaacgtagtagaggaacctagccgcgcataatattaacagacatcattgcaaagaatgagaaaattagtttccgaaccacagggtaaaaatcacaggccaaattactccctcttaagtaggatcaaaataacccagaacaaaccagaggggtatttgtccagttaggagagttcaaggttgaaaattcaagagggaaaatcagatcaagccaatataactctctagtattcaatggaacaaaattatcatgtttcgacagacatatcatttcacttctcatggtaccgataagcagaatattataaaggcgaaaagaaaattgatgacaatcaggccaatcaatatttgattggggccaaaatatctatctgagaacccagcttctcctcatcagctttctcagcctgacacgaagccttgttttgcttcctcctctcgatgcaaccttagccttctcctttctctctctcctccctgcctgcaggtgcaatagacaaggtgatcagtgtgctttcatgtataagaactaaagggaaacataaaaagcccaaccagaattgagatgataacagcctagaaatgcaggacatggttgaaataatagcacaaactcagaaacaaagcagataaatgtatcaaacagaatattttgttgtgagaaatggcacagttggtcagaagtagctggttgtaacatcattctgaaaatcagtgagatacatgtattttttcttcattttaccatcccaaatgccaaatatgctatttaactcaacatggattagaaaaaaaaacatgcgtgtaacaattgaaaagggatgcaaacaagaaaaaaaaaatatgcatttgcaaattcacagccatagcataagtaatcacaggtttatgggaattctcatctttgtggcaaataaataaataggatacttaagatttcgtgcatcatgagtcatcaactaatctcagacagttgaggctatggtgtaaaacaaaagctagagggggtgtacagcataaaagtagctcagcaaaaacctacatattcaaatccagacgtacagttgtacaatcaaatagctacaaggcccaatattcacaaaatgtgatcacataataccataacattccaagatgactattctaaacagtccaacacatgtattcagcattgcattcatcctaacacgttcagttcaatagtactcctacatgtatttagcatatccattcatccgaaaagtaaaagggggcacatgtatacatcatattgcattcaccggattgtgattcggtgacattcccccgtgacattaccgagaatgtcacggggaatgtcactgaatctgcgtcccattcaacctaaaactaaagcattacagcaagcatatgcattcaacctaaaactaaagcatgtagagagcatatgcattcaagcttaaacgaaaagcaggcgtgaatatgaatacagaaaggaaatgtaccctgatggtgtcgtggtagttccagccgacctccttggagagctggccgaggaggcagtacttgtggccgggctggaggcgaagaaccctagaagcatggattagttcatggaggaaaagaaaaggagaggagaggagaggaaagggtttcgaagcgagcgtacttgagggcgtcggggacgaccatgcgcttggtgcggtcgtagggaggggggacgccgtccgaaggccattgaggttggcgagggcggcctcgccgcgggggggtctgtgggggatcatgccgcggacggtgcgccagaagatgcgggaggggaggggcgcggaagtggatggggccatgggagcttggtgttcatccgcttgcggaggaaccggaggtacttcatcttctgccggacgagcccgccggagatgcacatctcctcgcaccgcaccaccaccacccgctgcccgttcaggagctccttcgccaccagcgacgccagccgccccagcattgggtgccgcgcgtccaccaccacccgccgcgtgcacagccccgaacccgacaccatcttcctctccttcttcttcttcttctccggtgggggtggtaggaggtggaacgcggcggcggcggcggcggctgcggagaagcgaagctctagggtttacgaatgaatctccttttagggtggggcatcgactaggacatagataatgggccgcactggaccttgatgggcttacttttgtttgggcctccaacatgttccttgtatcatggggcctaccat
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| CDS seq | atggtgtcgggttcggggctgtgcacgcggcgggtggtggtggacgcgcggcacccaatgctggggcggctggcgtcgctggtggcgaaggagctcctgaacgggcagcgggtggtggtggtgcggtgcgaggagatgtgcatctccggcgggctcgtccggcagaagatgaagtacctccggttcctccgcaagcggatgaacaccaagctcccatggccccatccacttccgcgcccctcccctcccgcatcttctggcgcaccgtccgcggcatga |
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| Protein seq | MVSGSGLCTRRVVVDARHPMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKLPWPHPLPRPSPPASSGAPSAA |
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| Function | 60S ribosomal protein L13a-4 [UniProtKB/Swiss-Prot:Q9FKC0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0000690 | OsLiXu_07g0000690.02 | Chr07 | 468135 | 470224 | - | NAM | ||
| CDS seq | atggtcgtccccgacgccctcaaggttcttcgcctccagcccggccacaagtactgcctcctcggccagctctccaaggaggtcggctggaactaccacgacaccatcagggcagggaggagagagagaaaggagaaggctaaggttgcatcgagaggaggaagcaaaacaaggcttcgtgtcaggctgagaaagctgatgaggagaagctgggttctcagatag
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| Protein seq | MVVPDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRAGRRERKEKAKVASRGGSKTRLRVRLRKLMRRSWVLR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0000690 | OsLiXu_07g0000690.01 | Chr07 | 467890 | 470358 | - | NAM | ||
| CDS seq | atggtgtcgggttcggggctgtgcacgcggcgggtggtggtggacgcgcggcacccaatgctggggcggctggcgtcgctggtggcgaaggagctcctgaacgggcagcgggtggtggtggtgcggtgcgaggagatgtgcatctccggcgggctcgtccggcagaagatgaagtacctccggttcctccgcaagcggatgaacaccaagctcccatggccccatccacttccgcgcccctcccctcccgcatcttctggcgcaccgtccgcggcatga
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| Protein seq | MVSGSGLCTRRVVVDARHPMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKLPWPHPLPRPSPPASSGAPSAA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0109500 | RBH | 11.224714 | 11.289791 | 20.839504 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01870 | RBH | 5.222479 | 5.117732 | 3.685026 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0109500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0000600 | RBH | 2.237136 | 23.446054 | 11.012978 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0008600 | RBH | 32.3449075 | 35.3608935 | 15.3475325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000630 | RBH | 1.292738 | 82.622047 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000630 | RBH | 6.923875 | 43.955902 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
