Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g54890 | OGI:03087620 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:31203316-31205407 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCCATTCCGCCTCCACCCCCGCCGCCCGTCCAAACCCTAGCTCCGCCGCCTCCGCCGCCTCCAGGAGAGGAGAGGTAAGTCGAAGATGGTGTCCGGCTCCGGCGTGTGCGCGCCGCGCGTGGTGGTGGACGCGCGCCACCACATGCTCGGCCGCCTGGCCTCCATCATCGCCAAGGAGCTCCTCAACGGGCAGCGCGTGGTGGTCGTCCGCTGCGAGGAGATCTGCATGTCCGGCGGCCTCGTCCGCCAGAAGATGAAGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGGTAAGCTGCGGATCCATGGATTTCTCTCCGTTTCCCCCTTGTCATTTCGATTTCTGATTTCTGTTCTGATTTTGGGACCTCGTGGTGAATCCCCGCAGCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAGGCGTACGAGGGCGTGCCGCCGCCGTACGACAGGACCAAGCGCATGGTCATCCCCGACGCGCTCAAGTACGTCGGATTCGCTTGTTGTTTGGATTTTTTTTTGTGTAATTGTGCGCGAGCGAGTAGTCTAATGGTGTTTGTTTGGTGCCGAATTGTAGGGTTCTGAGGCTGCAGCCTGGGCACAAGTACTGCCTCCTCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGGGTAAGTTTCCATTCCTTCCTTTCTAGCTGTGTGGTAATTGTTGTGATTGGATTGTTTACCAGATGTAGATTTATGGATCGGGTCATTCATTTAGTTTTTAGTAAATGCTTGCTCCTTAGGTTAACTGGATACCTTGATGAAATGAAATTATGCTCGATAAAAAATAAGGTACTAGATTGTTCTTTTCAATTGTGATGATCCTTCGTTTGTTAGACTGCCTTATTATAGTTGCTAGTTTTGCCGTGGTTAATTTATATGGTTCATATATTTCTTTTGTGATGAAATGCTCATGATCTGGGTGATGAAGAAAATCAGACGGATTCCCATTGGTTTTCCAATATGATTTTAACAACCAGCTACTTCTGACAGATCATGCCATTTGTGACTGTAAACTTTTATCTTCCTGGTTGTAAAATTTTATCTTAATTTCCTATTGTGATGTTTGCTGATATATTTAGTCCACTAGCTACAAATGATTTTCGTCATAGTGCTATGCGATTGATGATGTAATTATTAAGTTGTGATTGTCTGATATTGGAATGGGCCTGTGATGTAAGCTAAATATTTGCTACTCTTGATGGGGATTCCCAGTTGATGATCTCATACCACCAAGATCTCTGAGGCCCATAACATCATCCATTTTCTTCAGTAAAAACCTTTTAGTGTGAAATTGCATGTTTGGGGTAGCTCTGCATGTTGGGTGATTTATTATTTCGTTTTCAGCTTTGCCACTATTATGTTAGTTCTAACTTTGTCATCTGGCTAAGTTATCTAATTTGTGCTATGCCTGTTGATTTGATGGTCATTTCTCACTGATTTCATTGTTCAATTTTCAGGAGCTTGAGGAGAAGAGGAAGGAGAAGGCCAAGGTTGCCTATGACAGGAGGAAGCAACTGGCGAAGCTGCGTGTCAAGGCTGAGAAGGCAGCCGAGGAGAAGCTGGGTCCTCAGCTGGAGATTCTTGCTCCGATCAAATACTGAGAAGCTTTGCTTTCGTGCATCATCAGTTTTGTGAAACATGTGCCCCCTTATTCCTAGTAGTATGGTGACTCATGATAGTACAATCAAGGTGTTTAAACCGTTGTTATGCATCCCAGTTCTGCTACTCCTATTTGAAATTTTCTAGTCGATGAACTGTTTCTGTTTGTCAAATGTGTGCATTTGGAGATTCTACCGATGGCTGTCATAGTCCCATATTGACAAAGCGGTTTTTCTTAACTTATTTGCCCTTGTTGAGCGTCCGTCTGCAAGTTTATGTTGATTATTTTTCTGGTTAAGACTGGATGTAATGCGTGTGCTTTATCTCAGCAAGTTCCAGTGCGTTCATTGACCCCGGGTAGA
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| CDS seq | ATGGTGTCCGGCTCCGGCGTGTGCGCGCCGCGCGTGGTGGTGGACGCGCGCCACCACATGCTCGGCCGCCTGGCCTCCATCATCGCCAAGGAGCTCCTCAACGGGCAGCGCGTGGTGGTCGTCCGCTGCGAGGAGATCTGCATGTCCGGCGGCCTCGTCCGCCAGAAGATGAAGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAGGCGTACGAGGGCGTGCCGCCGCCGTACGACAGGACCAAGCGCATGGTCATCCCCGACGCGCTCAAGGTTCTGAGGCTGCAGCCTGGGCACAAGTACTGCCTCCTCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGGGAGCTTGAGGAGAAGAGGAAGGAGAAGGCCAAGGTTGCCTATGACAGGAGGAAGCAACTGGCGAAGCTGCGTGTCAAGGCTGAGAAGGCAGCCGAGGAGAAGCTGGGTCCTCAGCTGGAGATTCTTGCTCCGATCAAATACTGA
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| Protein seq | MVSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKAKVAYDRRKQLAKLRVKAEKAAEEKLGPQLEILAPIKY |
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| Function | 60S ribosomal protein L13a-4 [UniProtKB/Swiss-Prot:Q9FKC0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g54890 | LOC_Os03g54890.1 | Chr03 | 31203316 | 31205407 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGTCCGGCTCCGGCGTGTGCGCGCCGCGCGTGGTGGTGGACGCGCGCCACCACATGCTCGGCCGCCTGGCCTCCATCATCGCCAAGGAGCTCCTCAACGGGCAGCGCGTGGTGGTCGTCCGCTGCGAGGAGATCTGCATGTCCGGCGGCCTCGTCCGCCAGAAGATGAAGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAGGCGTACGAGGGCGTGCCGCCGCCGTACGACAGGACCAAGCGCATGGTCATCCCCGACGCGCTCAAGGTTCTGAGGCTGCAGCCTGGGCACAAGTACTGCCTCCTCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGGGAGCTTGAGGAGAAGAGGAAGGAGAAGGCCAAGGTTGCCTATGACAGGAGGAAGCAACTGGCGAAGCTGCGTGTCAAGGCTGAGAAGGCAGCCGAGGAGAAGCTGGGTCCTCAGCTGGAGATTCTTGCTCCGATCAAATACTGA
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| Protein seq | MVSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKAKVAYDRRKQLAKLRVKAEKAAEEKLGPQLEILAPIKY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g54890 | LOC_Os03g54890.2 | Chr03 | 31203316 | 31205407 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGTCCGGCTCCGGCGTGTGCGCGCCGCGCGTGGTGGTGGACGCGCGCCACCACATGCTCGGCCGCCTGGCCTCCATCATCGCCAAGGAGCTCCTCAACGGGCAGCGCGTGGTGGTCGTCCGCTGCGAGGAGATCTGCATGTCCGGCGGCCTCGTCCGCCAGAAGATGAAGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGCATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAGGCGTACGAGGGCGTGCCGCCGCCGTACGACAGGACCAAGCGCATGGTCATCCCCGACGCGCTCAAGGTTCTGAGGCTGCAGCCTGGGCACAAGTACTGCCTCCTCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGGGAGCTTGAGGAGAAGAGGAAGGAGAAGCTGGGTCCTCAGCTGGAGATTCTTGCTCCGATCAAATACTGA
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| Protein seq | MVSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKLGPQLEILAPIKY |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g54890 | LOC_Os03g54890.3 | Chr03 | 31203316 | 31205407 | + | MSU_osa1r7 | ||
| CDS seq | ATGATCCCGCACAAGACCAAGAGGGGAGAGGCGGCGCTGGCAAGGCTGAAGGCGTACGAGGGCGTGCCGCCGCCGTACGACAGGACCAAGCGCATGGTCATCCCCGACGCGCTCAAGGTTCTGAGGCTGCAGCCTGGGCACAAGTACTGCCTCCTCGGCCAGCTCTCCAAGGAGGTTGGCTGGAACTACTATGACACCATCAGGGAGCTTGAGGAGAAGAGGAAGGAGAAGGCCAAGGTTGCCTATGACAGGAGGAAGCAACTGGCGAAGCTGCGTGTCAAGGCTGAGAAGGCAGCCGAGGAGAAGCTGGGTCCTCAGCTGGAGATTCTTGCTCCGATCAAATACTGA
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| Protein seq | MIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKAKVAYDRRKQLAKLRVKAEKAAEEKLGPQLEILAPIKY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 10.840238 | 11.525134 | 12.415773 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0756000 | RBH | 18.014757 | 19.188835 | 54.192677 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01870 | RBH | 5.222479 | 5.117732 | 3.685026 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0756000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035290 | RBH | 3.431987 | 101.661812 | 34.297741 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0034960 | RBH | 0.426596 | 48.806316 | 17.503435 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035050 | RBH | 12.409028 | 151.115402 | 48.108536 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035350 | RBH | 0.766065 | 11.454754 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0034870 | RBH | 46.211365 | 360.600372 | 83.709511 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0533900 | RBH | 110.3468285 | 139.8154755 | 130.2304075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0034650 | RBH | 2.656470 | 19.483858 | 8.316833 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0532800 | SBH | 7.497479 | 17.100666 | 28.6753015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035130 | RBH | 1.953057 | 4.088815 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0035160 | RBH | 3.374450 | 308.264862 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0034820 | RBH | 25.620453 | 341.969818 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0034900 | RBH | 3.066014 | 8.928437 | 2.782552 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0034850 | RBH | 2.298310 | 143.527191 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G034640 | RBH | 3.311990 | 118.699951 | 29.019211 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034480 | RBH | 9.037729 | 173.153503 | 59.742760 |
