Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g06770 | OGI:05009580 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:3535336-3536194 | ||||||||
| Gene Symbol | S27a | ||||||||||
| DNA seq | AAAACCCTAGCCACCTTCCCCCCACCCCTCTCGCCGCCGCAGCCGCGGAGGCGACCCCTCCCCCGCCGCCGCCAAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCGCCAAGAAGCGCAAGAAGAAGACGTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCCGTGCTCCAGTTCTACAAGGTGGACGACGCCACCGGCAAGGTCACCAGGCTCAGGAAGGAGTGCCCCAACAACGACTGCGGCGCGGGCACCTTCATGGCCAACCACTTCGATCGCCACTACTGCGGCAAGTGCGGCCTCACCTACGTCTACAACCAGAAGGCCTAGGTTGATGCTTGCTGCTGCTCGCTTTGCTCTGATCTGATGCTTTTCATTCCCTTTTATCTGTTATTATCATGAGCTGAGATGAGCTGCTGCTGGTTACATGTTATTCAGATTATATGCGTTTTGTTCTCCGTTTACAATTGGAAAACTTTGAGTAGTAGCCTCTTGGAATATTATTATCTGTTACTGAATTGATGATGCGATGTGAGTTCACTTGTGTTTTCTGATTCCTGTTGGATGATTAGTTTGCGCCAGTTTCGTTGCTCTGATGTGTTTTTGAGATCTCACTGATTGCAATTAGATAATTGTTTTTCTGCA
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| CDS seq | ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCGCCAAGAAGCGCAAGAAGAAGACGTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCCGTGCTCCAGTTCTACAAGGTGGACGACGCCACCGGCAAGGTCACCAGGCTCAGGAAGGAGTGCCCCAACAACGACTGCGGCGCGGGCACCTTCATGGCCAACCACTTCGATCGCCACTACTGCGGCAAGTGCGGCCTCACCTACGTCTACAACCAGAAGGCCTAG
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA |
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| Function | Ubiquitin-40S ribosomal protein S27a-2 [UniProtKB/Swiss-Prot:P51431] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g06770 | LOC_Os05g06770.1 | Chr05 | 3535336 | 3536194 | + | MSU_osa1r7 | ||
| CDS seq | ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCGCCAAGAAGCGCAAGAAGAAGACGTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCCGTGCTCCAGTTCTACAAGGTGGACGACGCCACCGGCAAGGTCACCAGGCTCAGGAAGGAGTGCCCCAACAACGACTGCGGCGCGGGCACCTTCATGGCCAACCACTTCGATCGCCACTACTGCGGCAAGTGCGGCCTCACCTACGTCTACAACCAGAAGGCCTAG
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.210642 | 17.978559 | 14.068172 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0160200 | RBH | 21.045395 | 31.124075 | 63.677212 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g22490 | RBH | 21.473919 | 17.765038 | 19.244432 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0160200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004771 | SBH | 23.611549 | 747.267395 | 279.629150 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026321 | SBH | 19.307150 | 171.160156 | 135.050400 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004741 | SBH | 152.594208 | 376.591431 | 476.852570 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0129900 | RBH | 0.4774565 | 0.192808 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026001 | SBH | 8.491142 | 14.054948 | 25.362541 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0052000 | RBH | 102.314785 | 142.061058 | 256.5535125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026451 | SBH | 17.024366 | 6.984823 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004751 | SBH | 9.700830 | 34.566254 | 65.454994 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
