Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g22490 | OGI:01037920 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:12645515-12646409 | ||||||||
| Gene Symbol | UBQ5, RPS27a, OsUBQ5, OsRPS27a, OsCCD4b, OsUBI5 | ||||||||||
| DNA seq | TTTCAAACAAAATTCCCAATCACAATTACTTCGCTTCCCTGCAACAAGCAATTTAATCAAATACCATAGCCGATAACCAAGACCACGCCAACGGATAAAAAGATGATTAACCCAAACATAATTCGACAGTAGTACATAACATGATTTCAAAACCAAAAGTAGGGCATCACAATCTTCACAGAGGTGATGCTAAGGTGTTCAGTTCCAAGGAGACTAGTTTAATACGACATGACAAAAAAGGATTAATTATCATCTAATAACCAGTTCGATTTCCTCCTCCTTCCTTACTTCCGCCCCCAAAGAACAGGAGCCTACGCCTAAGCCTGCTGGTTGTAGACGTAGGTGAGGCCGCACTTACCGCAGTAGTGGCGGTCGAAGTGGTTGGCCATGAAGGTGCCGGCGCCGCACTCGGCGTTGGGGCACTCCTTGCGGAGGCGGGTGACCTTGCCGGTGGCGTCGTCCACCTTGTAGAACTGGAGCACGGCGAGCTTCACCTTCTTGTGCTTGTGCTTCTGCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTCGCCGGCGGCCGCAGCGGCGGCGCGCTTGCCCTTACCTGTGGTTTCTCCCGCGGCGGCGGGGTGGAGGCGACGGCGGTGGTGGTGGGGTGTGGACGGCTAGGGTTTA
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| CDS seq | ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTCCGCGGCGGCGCCAAGAAGCGCAAGAAGAAGACGTACACCAAGCCCAAGAAGCAGAAGCACAAGCACAAGAAGGTGAAGCTCGCCGTGCTCCAGTTCTACAAGGTGGACGACGCCACCGGCAAGGTCACCCGCCTCCGCAAGGAGTGCCCCAACGCCGAGTGCGGCGCCGGCACCTTCATGGCCAACCACTTCGACCGCCACTACTGCGGTAAGTGCGGCCTCACCTACGTCTACAACCAGCAGGCTTAG
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKQKHKHKKVKLAVLQFYKVDDATGKVTRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNQQA |
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| Function | Ubiquitin-40S ribosomal protein S27a-1 [UniProtKB/Swiss-Prot:Q9ARZ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g22490 | LOC_Os01g22490.1 | Chr01 | 12645515 | 12646409 | - | MSU_osa1r7 | ||
| CDS seq | ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTCCGCGGCGGCGCCAAGAAGCGCAAGAAGAAGACGTACACCAAGCCCAAGAAGCAGAAGCACAAGCACAAGAAGGTGAAGCTCGCCGTGCTCCAGTTCTACAAGGTGGACGACGCCACCGGCAAGGTCACCCGCCTCCGCAAGGAGTGCCCCAACGCCGAGTGCGGCGCCGGCACCTTCATGGCCAACCACTTCGACCGCCACTACTGCGGTAAGTGCGGCCTCACCTACGTCTACAACCAGCAGGCTTAG
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKQKHKHKKVKLAVLQFYKVDDATGKVTRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNQQA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 21.473919 | 17.765038 | 19.244432 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0328400 | RBH | 35.514610 | 29.552679 | 83.892929 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g06770 | RBH | 12.210642 | 17.978559 | 14.068172 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0328400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0009650 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0009290 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0009630 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0009170 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0009210 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0210000 | RBH | 178.0545575 | 271.5146485 | 229.590996 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0009220 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0205800 | RBH | 178.4049455 | 144.8029175 | 425.4343565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026451 | SBH | 17.024366 | 6.984823 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0009250 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0009200 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0009330 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009130 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G009280 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0009160 | SBH | 0.0 | 0.0 | 0.0 |
