Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0160200 | OGI:05009580 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:3535342-3536076 | ||||||||
| Gene Symbol | S27a | ||||||||||
| DNA seq | CTAGCCACCTTCCCCCCACCCCTCTCGCCGCCGCAGCCGCGGAGGCGACCCCTCCCCCGCCGCCGCCAAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCGCCAAGAAGCGCAAGAAGAAGACGTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCCGTGCTCCAGTTCTACAAGGTGGACGACGCCACCGGCAAGGTCACCAGGCTCAGGAAGGAGTGCCCCAACAACGACTGCGGCGCGGGCACCTTCATGGCCAACCACTTCGATCGCCACTACTGCGGCAAGTGCGGCCTCACCTACGTCTACAACCAGAAGGCCTAGGTTGATGCTTGCTGCTGCTCGCTTTGCTCTGATCTGATGCTTTTCATTCCCTTTTATCTGTTATTATCATGAGCTGAGATGAGCTGCTGCTGGTTACATGTTATTCAGATTATATGCGTTTTGTTCTCCGTTTACAATTGGAAAACTTTGAGTAGTAGCCTCTTGGAATATTATTATCTGTTACTGAATTGATGATG
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| CDS seq | ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCGCCAAGAAGCGCAAGAAGAAGACGTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCCGTGCTCCAGTTCTACAAGGTGGACGACGCCACCGGCAAGGTCACCAGGCTCAGGAAGGAGTGCCCCAACAACGACTGCGGCGCGGGCACCTTCATGGCCAACCACTTCGATCGCCACTACTGCGGCAAGTGCGGCCTCACCTACGTCTACAACCAGAAGGCCTAG
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA |
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| Function | Ubiquitin-40S ribosomal protein S27a-2 [UniProtKB/Swiss-Prot:P51431] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0160200 | OsNip_05t0160200-01 | Chr05 | 3535342 | 3536076 | + | RAP2018-11-26 | ||
| CDS seq | ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCGCCAAGAAGCGCAAGAAGAAGACGTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCCGTGCTCCAGTTCTACAAGGTGGACGACGCCACCGGCAAGGTCACCAGGCTCAGGAAGGAGTGCCCCAACAACGACTGCGGCGCGGGCACCTTCATGGCCAACCACTTCGATCGCCACTACTGCGGCAAGTGCGGCCTCACCTACGTCTACAACCAGAAGGCCTAG
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 21.045395 | 31.124075 | 63.677212 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0328400 | RBH | 35.514610 | 29.552679 | 83.892929 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g06770 | RBH | 12.210642 | 17.978559 | 14.068172 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0160200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0029010 | SBH | 0.0 | 0.0 | 5.214191 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028800 | SBH | 0.0 | 0.0 | 10.639738 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028800 | SBH | 0.0 | 0.0 | 18.733360 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028860 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028730 | SBH | 0.0 | 0.0 | 17.060280 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0050900 | RBH | 99.9032785 | 154.023689 | 90.090092 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0028440 | SBH | 0.0 | 0.0 | 4.924353 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0052000 | RBH | 102.314785 | 142.061058 | 256.5535125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028610 | SBH | 0.040161 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0028520 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028760 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028740 | SBH | 0.0 | 0.0 | 1.529603 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028790 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G028310 | SBH | 0.0 | 0.0 | 3.507805 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028810 | SBH | 0.0 | 0.0 | 20.561218 |
